Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G207000 Glycine max HOM05D006211 ORTHO05D007202 7.6e-65 250.4 128 100.0
Glyma.01G015400 Glycine max HOM05D006211 ORTHO05D007202 2.2e-56 222.2 132 86.4
VMungo1215G0299 Vigna mungo HOM05D006211 ORTHO05D007202 8.7e-53 210.3 128 81.2
Phvul.002G138000 Phaseolus vulgaris HOM05D006211 ORTHO05D007202 2.5e-52 208.8 128 80.5
Ca_25191_v3 Cicer arietinum L. HOM05D006211 ORTHO05D007202 5.5e-39 164.5 134 69.4
TPR.G8109 Trifolium pratense HOM05D006211 ORTHO05D007202 3.6e-38 161.8 135 65.9
Lj2g0003916 Lotus japonicus HOM05D006211 ORTHO05D007202 6.3e-35 151.0 134 61.2
Medtr5g029620 Medicago truncatula HOM05D006211 ORTHO05D007202 9.1e-34 147.1 139 61.9
Psat2g138960 Pisum sativum HOM05D006211 ORTHO05D007202 3.4e-33 145.2 136 62.5
arahy.Tifrunner.gnm1.ann1.Q6MSMD Arachis hypogaea HOM05D006211 ORTHO05D007202 7.2e-31 137.5 136 60.3
arahy.Tifrunner.gnm1.ann1.USP5IX Arachis hypogaea HOM05D006211 ORTHO05D007202 7.2e-31 137.5 136 60.3
Atru.chr6.1617 Acer truncatum HOM05D006211 ORTHO05D007202 2.9e-24 115.5 151 50.3
Lalb_Chr05g0215821 Lupinus albus HOM05D006211 ORTHO05D007202 3.8e-24 115.2 129 52.7
Thecc.03G308400 Theobroma cacao HOM05D006211 ORTHO05D007202 1.1e-23 113.6 160 45.6
FvH4_5g22880 Fragaria vesca HOM05D006211 ORTHO05D007202 4.2e-23 111.7 164 43.3
FAN18G2302 Fragaria x ananassa HOM05D006211 ORTHO05D007202 4.2e-23 111.7 164 43.3
FAN08G1932 Fragaria x ananassa HOM05D006211 ORTHO05D007202 5.5e-23 111.3 162 43.8
FAN13G1488 Fragaria x ananassa HOM05D006211 ORTHO05D007202 9.4e-23 110.5 116 51.7
CiPaw.11G097200 Carya illinoinensis HOM05D006211 ORTHO05D007202 1.2e-22 110.2 155 45.2
RcHm_v2.0_Chr7g0211581 Rosa chinensis HOM05D006211 ORTHO05D007202 1.6e-22 109.8 163 44.2
FAN18G0589 Fragaria x ananassa HOM05D006211 ORTHO05D007202 2.7e-22 109.0 164 42.7
Lalb_Chr16g0381161 Lupinus albus HOM05D006211 ORTHO05D007202 2.7e-22 109.0 136 48.5
MD16G1281100 Malus domestica HOM05D006211 ORTHO05D007202 2.7e-22 109.0 119 52.1
Prupe.5G029800 Prunus persica HOM05D006211 ORTHO05D007202 2.7e-22 109.0 118 49.2
FAN04G1558 Fragaria x ananassa HOM05D006211 ORTHO05D007202 3.6e-22 108.6 117 49.6
Lalb_Chr09g0325551 Lupinus albus HOM05D006211 ORTHO05D007202 3.6e-22 108.6 129 51.2
Cpa.g.sc90.12 Carica papaya HOM05D006211 ORTHO05D007202 4.7e-22 108.2 164 46.3
CANSAT21G1179 Cannabis sativa HOM05D006211 ORTHO05D007202 1.0e-21 107.1 166 42.2
MD06G1025300 Malus domestica HOM05D006211 ORTHO05D007202 1.4e-21 106.7 119 51.3
Cfa012495 Carpinus fangiana HOM05D006211 ORTHO05D007202 3.0e-21 105.5 160 47.5
Haze_08174 Corylus avellana HOM05D006211 ORTHO05D007202 3.0e-21 105.5 159 46.5
Duzib205G0699 Durio zibethinus HOM05D006211 ORTHO05D007202 3.0e-21 105.5 159 43.4
CiPaw.12G067200 Carya illinoinensis HOM05D006211 ORTHO05D007202 5.2e-21 104.8 153 45.8
COL.COLO4_16960 Corchorus olitorius HOM05D006211 ORTHO05D007202 6.7e-21 104.4 158 45.6
TWI60G1252 Tripterygium wilfordii HOM05D006211 ORTHO05D007202 1.1e-20 103.6 162 44.4
Duzib084G0219 Durio zibethinus HOM05D006211 ORTHO05D007202 7.4e-20 100.9 159 44.0
QL12p001245 Quercus lobata HOM05D006211 ORTHO05D007202 4.8e-19 98.2 158 44.9
TWI81G0656 Tripterygium wilfordii HOM05D006211 ORTHO05D007202 6.3e-19 97.8 162 42.0
Gohir.A08G154500 Gossypium hirsutum HOM05D006211 ORTHO05D007202 3.1e-18 95.5 154 42.2
Gorai.004G183000 Gossypium raimondii HOM05D006211 ORTHO05D007202 5.3e-18 94.7 154 41.6
Ciclev10002672m.g Citrus clementina HOM05D006211 ORTHO05D007202 1.2e-17 93.6 118 48.3
Gohir.D08G175100 Gossypium hirsutum HOM05D006211 ORTHO05D007202 1.6e-17 93.2 152 41.4
vmacro00294 Vaccinium macrocarpon HOM05D006211 ORTHO05D007202 1.6e-17 93.2 157 41.4
Rhsim11G0019700 Rhododendron simsii HOM05D006211 ORTHO05D007202 2.0e-17 92.8 163 41.7
vmacro00301 Vaccinium macrocarpon HOM05D006211 ORTHO05D007202 2.6e-17 92.4 157 41.4
Manes.17G010400 Manihot esculenta HOM05D006211 ORTHO05D007202 5.9e-17 91.3 103 52.4
Gohir.D03G175400 Gossypium hirsutum HOM05D006211 ORTHO05D007202 7.7e-17 90.9 154 42.9
Gorai.003G184400 Gossypium raimondii HOM05D006211 ORTHO05D007202 7.7e-17 90.9 154 42.9
Oeu019228.1 Olea europaea HOM05D006211 ORTHO05D007202 3.8e-16 88.6 144 41.0
Oeu028870.1 Olea europaea HOM05D006211 ORTHO05D007202 3.8e-16 88.6 144 41.0
Dinv25246 Davidia involucrata HOM05D006211 ORTHO05D007202 5.0e-16 88.2 161 39.8
Dinv28989 Davidia involucrata HOM05D006211 ORTHO05D007202 6.5e-16 87.8 156 40.4
PGR042G2947 Punica granatum HOM05D006211 ORTHO05D007202 8.5e-16 87.4 116 50.9
Actinidia03352 Actinidia chinensis HOM05D006211 ORTHO05D007202 5.5e-15 84.7 156 37.8
Hma1.2p1_1594F.1_g292720 Hydrangea macrophylla HOM05D006211 ORTHO05D007202 7.2e-15 84.3 161 37.3
ClCG09G011720 Citrullus lanatus HOM05D006211 ORTHO05D007202 9.4e-15 84.0 164 38.4
Nn1g00185 Nelumbo nucifera HOM05D006211 ORTHO05D007202 1.2e-14 83.6 157 40.1
EL10Ac5g12029 Beta vulgaris HOM05D006211 ORTHO05D007202 2.7e-14 82.4 117 47.0
BcaC02g11652 Brassica carinata HOM05D006211 ORTHO05D007202 2.7e-14 82.4 144 44.4
BolC4t22919H Brassica oleracea HOM05D006211 ORTHO05D007202 2.7e-14 82.4 144 44.4
Peaxi162Scf00170g00822 Petunia axillaris HOM05D006211 ORTHO05D007202 3.6e-14 82.0 161 36.0
Potri.003G095500 Populus trichocarpa HOM05D006211 ORTHO05D007202 3.6e-14 82.0 172 38.4
Sed0013517 Sechium edule HOM05D006211 ORTHO05D007202 4.7e-14 81.6 163 39.9
Solyc08g076520.3 Solanum lycopersicum HOM05D006211 ORTHO05D007202 4.7e-14 81.6 170 38.2
Potri.001G138300 Populus trichocarpa HOM05D006211 ORTHO05D007202 6.1e-14 81.3 135 44.4
Lj8A306T66 Lonicera japonica HOM05D006211 ORTHO05D007202 8.0e-14 80.9 162 39.5
Sopen08g025100 Solanum pennellii HOM05D006211 ORTHO05D007202 8.0e-14 80.9 170 38.2
MSTRG.1998 Avicennia marina HOM05D006211 ORTHO05D007202 1.4e-13 80.1 131 38.9
A05p10260 Brassica napus HOM05D006211 ORTHO05D007202 1.8e-13 79.7 139 43.2
BraA05t19966Z Brassica rapa HOM05D006211 ORTHO05D007202 1.8e-13 79.7 139 43.2
Thhalv10017330m.g Eutrema salsugineum HOM05D006211 ORTHO05D007202 1.8e-13 79.7 147 43.5
Sabra03G0064400 Salix brachista HOM05D006211 ORTHO05D007202 1.8e-13 79.7 172 37.8
Nitab4.5_0000127g0020 Nicotiana tabacum HOM05D006211 ORTHO05D007202 3.0e-13 79.0 169 37.3
Ah.12g055390 Amaranthus hybridus HOM05D006211 ORTHO05D007202 4.0e-13 78.6 158 39.9
PGSC0003DMG400014798 Solanum tuberosum HOM05D006211 ORTHO05D007202 6.8e-13 77.8 174 37.4
Aa31LG9G15460 Aethionema arabicum HOM05D006211 ORTHO05D007202 1.2e-12 77.0 145 41.4
AUR62018657 Chenopodium quinoa HOM05D006211 ORTHO05D007202 2.6e-12 75.9 159 40.9
TAR375G0881 Trochodendron aralioides HOM05D006211 ORTHO05D007202 4.4e-12 75.1 153 39.9
THA.LOC104814422 Tarenaya hassleriana HOM05D006211 ORTHO05D007202 5.7e-12 74.7 119 44.5
MELO3C003431.2 Cucumis melo HOM05D006211 ORTHO05D007202 7.5e-12 74.3 94 44.7
BcaC02g07713 Brassica carinata HOM05D006211 ORTHO05D007202 9.8e-12 73.9 132 41.7
BolC4t27918H Brassica oleracea HOM05D006211 ORTHO05D007202 1.3e-11 73.6 132 41.7
Gohir.A03G000042 Gossypium hirsutum HOM05D006211 ORTHO05D007202 1.3e-11 73.6 154 36.4
Hund11197 Selenicereus undatus HOM05D006211 ORTHO05D007202 1.3e-11 73.6 159 38.4
BcaB06g28843 Brassica carinata HOM05D006211 ORTHO05D007202 1.7e-11 73.2 138 39.9
ECA233G1983 Erigeron canadensis HOM05D006211 ORTHO05D007202 1.7e-11 73.2 148 33.1
BcaB02g09427 Brassica carinata HOM05D006211 ORTHO05D007202 3.7e-11 72.0 115 45.2
Sp4g17690 Schrenkiella parvula HOM05D006211 ORTHO05D007202 3.7e-11 72.0 119 43.7
Carub.0004s1716 Capsella rubella HOM05D006211 ORTHO05D007202 4.8e-11 71.6 142 38.7
Nitab4.5_0000529g0100 Nicotiana tabacum HOM05D006211 ORTHO05D007202 4.8e-11 71.6 171 33.9
AT2G35470 Arabidopsis thaliana HOM05D006211 ORTHO05D007202 6.3e-11 71.2 142 38.7
DCAR_008238 Daucus carota HOM05D006211 ORTHO05D007202 1.1e-10 70.5 154 34.4
AL4G31520 Arabidopsis lyrata HOM05D006211 ORTHO05D007202 1.4e-10 70.1 142 38.7
Migut.E00776 Erythranthe guttata HOM05D006211 ORTHO05D007202 1.4e-10 70.1 95 41.1
Hund14362 Selenicereus undatus HOM05D006211 ORTHO05D007202 1.4e-10 70.1 159 35.8
THA.LOC104798487 Tarenaya hassleriana HOM05D006211 ORTHO05D007202 1.8e-10 69.7 119 42.9
CARHR129620 Cardamine hirsuta HOM05D006211 ORTHO05D007202 2.4e-10 69.3 141 36.9
Sc22g0001800 Simmondsia chinensis HOM05D006211 ORTHO05D007202 4.1e-10 68.6 159 32.7
Sabra01G0107000 Salix brachista HOM05D006211 ORTHO05D007202 5.4e-10 68.2 163 37.4
BraA04t18191Z Brassica rapa HOM05D006211 ORTHO05D007202 7.0e-10 67.8 114 42.1
Lsat_1_v5_gn_6_3501 Lactuca sativa HOM05D006211 ORTHO05D007202 1.2e-09 67.0 164 32.9
Actinidia06373 Actinidia chinensis HOM05D006211 ORTHO05D007202 2.0e-09 66.2 125 36.8
Aqoxy3G02212 Aquilegia oxysepala HOM05D006211 ORTHO05D007202 2.0e-09 66.2 94 45.7
Eucgr.E00236 Eucalyptus grandis HOM05D006211 ORTHO05D007202 4.5e-09 65.1 97 41.2
SGA_v2.0_scaffold20G09263 Striga asiatica HOM05D006211 ORTHO05D007202 8.5e-08 60.8 153 31.4
HanXRQChr02g0049381 Helianthus annuus HOM05D006211 ORTHO05D007202 1.1e-07 60.5 124 33.1
A04p26920 Brassica napus HOM05D006211 ORTHO05D007202 1.9e-07 59.7 135 34.8
C04p64310 Brassica napus HOM05D006211 ORTHO05D007202 1.9e-07 59.7 135 34.8
DCAR_004283 Daucus carota HOM05D006211 ORTHO05D007202 2.5e-07 59.3 89 42.7
GSVIVG01013097001 Vitis vinifera HOM05D006211 ORTHO05D007202 3.2e-07 58.9 83 44.6
ATR0829G134 Amborella trichopoda HOM05D006211 ORTHO05D007202 5.5e-07 58.2 134 35.8
C04p12710 Brassica napus HOM05D006211 ORTHO05D007202 1.2e-06 57.0 71 50.7
HanXRQChr13g0394911 Helianthus annuus HOM05D006211 ORTHO05D007202 1.6e-06 56.6 158 31.6
Cc08_g03420 Coffea canephora HOM05D006211 ORTHO05D007202 2.7e-06 55.8 97 40.2
Zm00001eb430030 Zea mays HOM05D006211 ORTHO05D007202 6.1e-06 54.7 86 39.5


User provided reference genes

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