Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 2.6e-249 865.1 520 100.0
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 6.6e-216 754.2 520 82.3
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 1.0e-192 677.2 527 74.8
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 2.3e-184 649.4 554 69.7
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 3.3e-151 539.3 537 65.9
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 3.3e-151 539.3 537 65.9
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 3.6e-145 519.2 575 62.3
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 1.0e-144 517.7 578 56.2
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 5.1e-144 515.4 546 61.2
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 4.2e-138 495.7 550 58.9
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 3.6e-137 492.7 534 63.3
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 2.6e-135 486.5 563 55.1
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 1.3e-126 457.6 538 55.9
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 1.7e-126 457.2 540 55.0
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 1.1e-125 454.5 538 55.8
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 5.4e-125 452.2 569 50.1
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 2.0e-124 450.3 543 56.7
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 2.9e-123 446.4 559 52.1
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 5.2e-120 435.6 578 49.7
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 2.0e-119 433.7 562 49.6
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 5.7e-119 432.2 551 52.3
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.3e-118 431.0 549 51.9
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 1.7e-118 430.6 551 52.3
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.7e-118 430.6 551 52.3
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 6.3e-118 428.7 552 50.4
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 8.3e-118 428.3 549 51.5
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 8.3e-118 428.3 568 52.6
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 3.1e-117 426.4 551 50.3
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 3.5e-116 422.9 580 48.8
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 3.5e-116 422.9 536 51.3
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 3.8e-115 419.5 542 51.3
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 6.6e-115 418.7 365 63.6
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 6.6e-115 418.7 569 48.3
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 1.5e-114 417.5 571 49.9
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 2.5e-114 416.8 590 49.5
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 2.8e-113 413.3 577 48.2
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 2.3e-112 410.2 525 52.4
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 6.8e-112 408.7 588 46.9
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 1.2e-111 407.9 366 63.1
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 1.5e-111 407.5 545 49.9
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 2.0e-111 407.1 529 52.2
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 2.6e-111 406.8 583 47.2
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 3.4e-111 406.4 548 49.6
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 4.4e-111 406.0 557 48.5
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 5.7e-111 405.6 553 48.8
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 7.5e-111 405.2 536 49.8
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 2.2e-110 403.7 593 46.7
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 6.4e-110 402.1 537 50.5
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 4.1e-109 399.4 367 62.4
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 5.4e-109 399.1 412 58.0
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 7.0e-109 398.7 618 46.1
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 9.2e-109 398.3 397 59.2
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 3.5e-108 396.4 556 48.9
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 1.3e-107 394.4 586 45.9
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 3.0e-107 393.3 529 53.9
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 6.6e-107 392.1 527 50.9
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 6.6e-107 392.1 565 46.4
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 8.6e-107 391.7 585 45.5
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 1.1e-106 391.3 588 46.9
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 1.9e-106 390.6 360 61.7
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 2.5e-106 390.2 573 50.8
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 3.3e-106 389.8 589 48.0
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 7.3e-106 388.7 403 57.1
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 7.3e-106 388.7 559 46.2
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.6e-105 387.5 583 46.1
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 1.6e-105 387.5 380 60.8
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 1.6e-105 387.5 586 45.1
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 4.7e-105 386.0 554 47.1
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.0e-104 384.8 564 46.5
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 3.4e-103 379.8 538 49.4
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 4.4e-103 379.4 383 59.3
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 4.4e-103 379.4 384 59.1
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 4.4e-103 379.4 382 59.4
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 9.8e-103 378.3 384 58.9
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 9.8e-103 378.3 384 58.9
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 9.8e-103 378.3 547 47.3
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 1.3e-102 377.9 559 46.3
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 2.2e-102 377.1 368 59.2
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 3.7e-102 376.3 599 46.7
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 8.3e-102 375.2 535 48.8
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 8.3e-102 375.2 372 59.4
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 1.4e-101 374.4 545 47.0
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 2.4e-101 373.6 456 52.2
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 4.1e-101 372.9 388 58.2
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 2.0e-100 370.5 372 58.9
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 6.0e-100 369.0 564 48.8
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 6.0e-100 369.0 554 44.2
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 1.0e-99 368.2 421 58.7
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 3.9e-99 366.3 549 47.2
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 5.0e-99 365.9 612 43.5
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 7.3e-98 362.1 558 45.3
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 8.1e-97 358.6 527 51.8
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 1.7e-94 350.9 550 45.5
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 6.4e-94 349.0 579 44.4
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 3.2e-93 346.7 545 48.4
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 3.2e-93 346.7 565 43.7
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 4.1e-93 346.3 549 44.4
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 4.1e-93 346.3 552 44.7
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 5.4e-93 345.9 532 50.8
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 3.5e-92 343.2 558 44.4
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 1.2e-89 334.7 356 56.5
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.6e-89 334.3 541 49.0
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 2.1e-89 334.0 476 47.7
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 3.6e-89 333.2 421 50.4
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 9.9e-87 325.1 405 50.6
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 8.4e-86 322.0 408 49.8
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 6.0e-84 315.8 379 51.2
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 7.8e-84 315.5 352 54.5
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 4.7e-81 306.2 500 44.8
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 1.4e-80 304.7 407 48.9
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 1.3e-75 288.1 539 41.7
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 5.1e-59 233.0 141 80.9
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 6.5e-54 216.1 132 80.3
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 4.1e-48 196.8 340 40.0
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 2.0e-47 194.5 353 39.4
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 3.4e-47 193.7 259 44.4
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 7.6e-47 192.6 239 47.7
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 3.8e-46 190.3 263 47.1
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.9e-42 177.9 108 82.4
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 7.4e-42 176.0 408 35.3
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 4.8e-41 173.3 188 51.1
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 7.9e-36 156.0 117 71.8
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 1.8e-32 144.8 243 42.4
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 1.2e-31 142.1 173 49.1
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 1.2e-31 142.1 173 49.1
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 1.2e-31 142.1 318 35.2
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 2.0e-31 141.4 103 65.0
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 2.0e-31 141.4 103 65.0
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 2.7e-28 131.0 336 38.4
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 4.7e-28 130.2 173 46.8
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 3.0e-19 100.9 81 64.2
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 1.2e-15 89.0 167 41.3
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 5.9e-15 86.7 65 66.2
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 5.0e-14 83.6 186 39.2
Cfa024331 Carpinus fangiana HOM05D005450 ORTHO05D006880 2.7e-12 77.8 262 30.9
C09p29040 Brassica napus HOM05D005450 ORTHO05D006880 1.4e-11 75.5 120 40.0
Cfa024074 Carpinus fangiana HOM05D000374 ORTHO05D000238 2.6e-10 71.2 192 28.1
BraA02t08058Z Brassica rapa HOM05D005450 ORTHO05D006880 1.3e-06 58.9 119 38.7
arahy.Tifrunner.gnm1.ann1.QT2X3H Arachis hypogaea HOM05D000599 ORTHO05D006883 5.0e-06 57.0 91 46.2
Lj1g0021214 Lotus japonicus HOM05D000845 ORTHO05D009756 8.5e-06 56.2 213 25.8


User provided reference genes

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