Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 2.4e-94 349.4 254 100.0
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 1.3e-71 273.9 169 84.6
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 8.3e-47 191.4 181 60.8
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 6.6e-44 181.8 181 59.7
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 2.5e-43 179.9 181 61.9
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 2.1e-37 160.2 188 53.7
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 2.1e-34 150.2 184 53.3
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 2.1e-34 150.2 184 53.3
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 8.1e-34 148.3 183 53.6
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 5.2e-33 145.6 190 54.2
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 4.6e-29 132.5 180 50.6
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 2.3e-28 130.2 222 44.1
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 5.1e-28 129.0 180 48.9
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 5.8e-24 115.5 194 45.4
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 1.7e-23 114.0 200 45.5
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 6.4e-23 112.1 196 43.9
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 8.4e-23 111.7 204 44.1
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 1.4e-22 110.9 217 42.4
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 1.9e-22 110.5 203 41.4
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 3.5e-21 106.3 194 39.7
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 6.0e-21 105.5 205 41.0
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 6.0e-21 105.5 172 42.4
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 1.3e-20 104.4 190 42.6
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.3e-20 104.4 197 41.1
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 3.9e-20 102.8 193 42.0
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 6.6e-20 102.1 181 43.6
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 8.7e-20 101.7 193 41.5
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 1.9e-19 100.5 211 40.3
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 2.5e-19 100.1 173 45.7
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 7.3e-19 98.6 209 38.8
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 9.6e-19 98.2 190 38.4
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 2.8e-18 96.7 218 36.2
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 3.6e-18 96.3 203 40.9
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 4.8e-18 95.9 168 42.3
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 4.8e-18 95.9 186 39.2
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 4.8e-18 95.9 188 37.8
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 8.1e-18 95.1 194 38.1
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 8.1e-18 95.1 202 39.6
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.1e-17 94.7 183 43.2
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 1.1e-17 94.7 209 37.8
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 1.1e-17 94.7 193 40.4
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 3.1e-17 93.2 209 39.2
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 4.0e-17 92.8 193 39.4
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 9.0e-17 91.7 209 37.3
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 1.5e-16 90.9 200 38.0
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 1.5e-16 90.9 203 36.0
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 5.8e-16 89.0 213 36.6
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 7.6e-16 88.6 211 39.3
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 9.9e-16 88.2 199 36.2
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 9.9e-16 88.2 192 38.5
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 1.7e-15 87.4 195 39.0
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 1.7e-15 87.4 183 34.4
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 1.7e-15 87.4 218 36.7
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 2.2e-15 87.0 208 36.5
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 2.2e-15 87.0 210 38.6
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 4.9e-15 85.9 192 38.0
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.1e-14 84.7 197 39.1
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 1.4e-14 84.3 186 39.8
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 1.9e-14 84.0 72 56.9
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 5.4e-14 82.4 188 38.3
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 5.4e-14 82.4 223 36.3
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 9.3e-14 81.6 219 35.2
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 9.3e-14 81.6 189 36.5
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 2.1e-13 80.5 186 34.9
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 2.1e-13 80.5 196 38.3
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 2.7e-13 80.1 179 38.0
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 2.7e-13 80.1 169 37.9
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 2.7e-13 80.1 218 35.8
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 4.6e-13 79.3 194 34.0
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 6.0e-13 79.0 218 35.3
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 1.3e-12 77.8 205 35.6
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 3.0e-12 76.6 173 37.6
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 5.1e-12 75.9 198 35.4
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 6.7e-12 75.5 194 32.5
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 8.7e-12 75.1 167 36.5
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 8.7e-12 75.1 191 36.1
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 1.1e-11 74.7 230 29.6
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 1.5e-11 74.3 103 46.6
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.9e-11 73.9 169 34.9
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.9e-11 73.9 173 38.2
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 2.5e-11 73.6 184 33.2
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 3.3e-11 73.2 175 33.7
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.3e-10 71.2 208 33.2
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 2.1e-10 70.5 200 32.5
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 2.1e-10 70.5 103 44.7
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 4.8e-10 69.3 195 35.9
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 6.2e-10 68.9 198 31.8
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 8.1e-10 68.6 190 33.2
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 8.1e-10 68.6 190 33.2
Ah.07g200600 Amaranthus hybridus HOM05D006310 ORTHO05D007768 1.1e-09 68.2 167 35.3
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 1.1e-09 68.2 187 33.7
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.8e-09 67.4 191 37.7
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 2.4e-09 67.0 183 33.9
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 2.4e-09 67.0 213 31.9
Peaxi162Scf00184g00001 Petunia axillaris HOM05D006310 ORTHO05D007768 2.4e-09 67.0 191 33.5
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 4.0e-09 66.2 184 32.1
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 5.3e-09 65.9 180 34.4
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 5.3e-09 65.9 41 70.7
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 9.0e-09 65.1 194 30.4
CDE06G1171 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.2e-08 64.7 194 33.5
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 1.5e-08 64.3 176 31.2
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 2.0e-08 63.9 176 34.1
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 7.6e-08 62.0 172 32.6
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 1.3e-07 61.2 208 33.2
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 1.7e-07 60.8 171 31.6
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 2.2e-07 60.5 174 32.2
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 2.2e-07 60.5 168 31.0
Duzib150G0453 Durio zibethinus HOM05D001903 ORTHO05D001847 2.2e-07 60.5 179 32.4
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 2.2e-07 60.5 174 34.5
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 2.2e-07 60.5 64 51.6
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 2.9e-07 60.1 172 32.0
Medtr4g010250 Medicago truncatula HOM05D001903 ORTHO05D001847 3.8e-07 59.7 181 30.4
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 6.4e-07 58.9 174 31.6
Eucgr.E00267 Eucalyptus grandis HOM05D006310 ORTHO05D007768 1.1e-06 58.2 61 50.8
Eucgr.E00268 Eucalyptus grandis HOM05D006310 ORTHO05D007768 1.1e-06 58.2 60 51.7
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 1.4e-06 57.8 183 32.2
SEGI_10096 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 1.4e-06 57.8 58 51.7
SEGI_05294 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 1.9e-06 57.4 64 50.0
unitig_699.g19788 Utricularia gibba HOM05D006310 ORTHO05D007768 3.2e-06 56.6 49 55.1
Nn1g00145 Nelumbo nucifera HOM05D006310 ORTHO05D007768 4.2e-06 56.2 210 30.5
Lj3g0010604 Lotus japonicus HOM05D001903 ORTHO05D001847 5.5e-06 55.8 187 28.3
Ciclev10009202m.g Citrus clementina HOM05D001903 ORTHO05D001847 7.1e-06 55.5 80 40.0
SEGI_05061 Sequoiadendron giganteum HOM05D006310 ORTHO05D007768 7.1e-06 55.5 91 38.5
Nn2g12150 Nelumbo nucifera HOM05D006310 ORTHO05D007768 9.3e-06 55.1 31 77.4
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 9.3e-06 55.1 63 42.9


User provided reference genes

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