Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 6.0e-124 447.6 238 100.0
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 6.7e-107 391.0 240 87.5
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 2.0e-103 379.4 234 85.0
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 5.0e-102 374.8 234 84.2
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 9.4e-85 317.4 230 73.5
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 2.3e-83 312.8 235 70.6
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 1.0e-78 297.4 238 69.7
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 1.0e-78 297.4 238 69.7
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 6.5e-78 294.7 234 70.1
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 2.7e-76 289.3 238 70.6
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 2.7e-76 289.3 238 70.6
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 5.4e-72 275.0 237 65.4
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 9.5e-69 264.2 234 62.8
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 2.2e-57 226.5 237 56.1
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 2.9e-57 226.1 224 62.5
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 2.3e-54 216.5 235 57.0
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 8.6e-54 214.5 239 55.6
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 8.0e-52 208.0 236 55.1
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 1.1e-51 207.6 239 56.1
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.5e-50 203.8 250 52.0
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 4.4e-50 202.2 253 51.0
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 9.8e-50 201.1 237 53.2
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 9.8e-50 201.1 243 54.7
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 1.7e-49 200.3 253 50.2
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 2.2e-49 199.9 240 54.6
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.9e-49 199.5 240 50.0
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 2.9e-49 199.5 250 52.4
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 3.7e-49 199.1 239 54.0
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 3.7e-49 199.1 236 55.5
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 4.9e-49 198.7 240 50.0
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 6.4e-49 198.4 242 52.1
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 8.3e-49 198.0 241 51.9
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 1.4e-48 197.2 243 54.3
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.4e-48 197.2 240 50.0
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.4e-48 197.2 254 49.6
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 2.4e-48 196.4 252 52.0
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.1e-48 195.7 240 49.6
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.4e-48 195.3 238 51.7
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 7.0e-48 194.9 240 53.3
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 1.2e-47 194.1 244 53.7
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.6e-47 193.7 240 49.2
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 3.5e-47 192.6 238 50.0
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 4.6e-47 192.2 235 48.5
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 6.0e-47 191.8 244 50.0
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 2.3e-46 189.9 233 52.4
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 2.3e-46 189.9 239 48.5
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 5.1e-46 188.7 240 51.2
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 5.1e-46 188.7 235 48.1
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 5.1e-46 188.7 240 53.8
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.1e-45 187.6 236 49.6
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 5.6e-45 185.3 240 50.8
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.2e-44 184.1 237 50.2
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.2e-44 184.1 237 50.2
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 1.6e-44 183.7 238 50.4
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.1e-43 181.0 238 48.3
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.1e-43 179.5 237 49.4
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 3.1e-43 179.5 257 47.5
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 8.9e-43 177.9 248 49.6
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 1.5e-42 177.2 229 47.6
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 2.0e-42 176.8 254 46.5
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 2.6e-42 176.4 236 45.3
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 9.9e-42 174.5 235 44.3
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 2.9e-41 172.9 235 48.9
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.9e-41 172.9 234 51.7
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.7e-41 172.6 234 45.7
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 3.7e-41 172.6 236 48.7
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 3.7e-41 172.6 240 47.9
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.9e-41 172.2 236 45.3
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.4e-40 170.6 236 47.9
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 1.4e-40 170.6 235 50.2
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 2.4e-40 169.9 239 46.9
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.6e-39 167.2 236 47.0
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.1e-39 166.8 236 48.3
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 3.5e-39 166.0 236 47.0
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 7.8e-39 164.9 242 50.4
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 7.8e-39 164.9 248 45.2
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.9e-38 162.5 264 45.8
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 6.6e-38 161.8 225 48.9
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 1.5e-37 160.6 245 46.5
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 9.5e-37 157.9 242 44.6
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 8.1e-36 154.8 233 43.3
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.8e-35 153.7 278 41.0
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 3.1e-35 152.9 249 41.0
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 8.9e-35 151.4 248 44.0
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 5.8e-34 148.7 210 47.6
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 4.9e-33 145.6 234 44.0
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 1.4e-32 144.1 239 45.6
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 7.1e-32 141.7 252 42.9
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 9.2e-32 141.4 244 37.7
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 9.2e-32 141.4 243 42.4
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 2.7e-31 139.8 236 38.6
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 1.3e-30 137.5 222 43.7
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 1.7e-30 137.1 230 38.7
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.7e-30 137.1 253 37.5
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 3.3e-29 132.9 262 42.0
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.3e-29 132.5 228 40.4
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 1.6e-28 130.6 196 49.0
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 4.7e-28 129.0 246 41.5
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 8.1e-28 128.3 240 43.3
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 8.1e-28 128.3 245 38.4
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 4.0e-27 125.9 244 37.7
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 9.0e-27 124.8 236 42.4
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 9.0e-27 124.8 236 42.4
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 9.0e-27 124.8 243 42.0
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.5e-26 124.0 244 41.8
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 1.5e-26 124.0 230 37.0
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 5.8e-26 122.1 265 40.8
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.3e-25 120.9 251 35.5
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 1.7e-25 120.6 240 37.1
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 1.7e-25 120.6 240 37.1
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 2.2e-25 120.2 237 40.1
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 2.2e-25 120.2 237 40.1
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 2.2e-25 120.2 237 40.1
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 3.8e-25 119.4 241 38.6
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 1.1e-24 117.9 235 37.0
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 1.9e-24 117.1 240 36.7
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 5.4e-24 115.5 236 36.0
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 1.2e-23 114.4 249 40.6
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.6e-23 114.0 245 38.4
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 6.0e-23 112.1 227 35.2
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 1.3e-22 110.9 244 39.8
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 2.3e-22 110.2 249 39.8
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 2.3e-22 110.2 224 33.9
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 3.9e-22 109.4 227 35.2
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 3.9e-22 109.4 227 35.2
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 8.7e-22 108.2 223 33.6
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 1.9e-21 107.1 222 36.5
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 5.6e-21 105.5 235 34.9
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 4.8e-20 102.4 221 40.3
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 6.2e-20 102.1 225 37.3
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 1.4e-19 100.9 247 35.2
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.4e-19 100.9 165 41.2
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.2e-18 97.8 222 34.2
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 1.7e-17 94.0 236 32.2
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.7e-17 94.0 236 30.5
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.7e-17 94.0 214 34.1
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.4e-16 90.9 206 34.0
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 1.4e-16 90.9 251 34.7
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 9.3e-16 88.2 193 34.7
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 6.0e-15 85.5 234 31.6
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 7.9e-15 85.1 145 43.4
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.0e-14 84.7 104 44.2
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 3.0e-14 83.2 105 44.8
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 3.0e-14 83.2 108 50.0
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 5.1e-14 82.4 104 45.2
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 8.7e-14 81.6 151 43.0
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.9e-13 80.5 102 44.1
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 3.1e-11 73.2 86 53.5
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 4.5e-10 69.3 89 46.1
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 5.8e-10 68.9 214 36.0
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.4e-08 64.3 159 34.6
Zm00001eb072350 Zea mays HOM05D004742 ORTHO05D005677 4.2e-08 62.8 93 47.3
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 3.5e-07 59.7 87 41.4
CSS0009789 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.0e-06 56.6 104 35.6


User provided reference genes

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