Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G203700 Glycine max HOM05D000513 ORTHO05D008786 9.6e-86 320.1 158 100.0
Glyma.01G019100 Glycine max HOM05D000513 ORTHO05D008786 2.1e-80 302.4 158 93.0
VMungo1215G2748 Vigna mungo HOM05D000513 ORTHO05D008786 2.8e-69 265.4 158 80.4
Phvul.002G139001 Phaseolus vulgaris HOM05D000513 ORTHO05D008786 1.4e-68 263.1 158 80.4
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 8.2e-61 237.3 159 73.6
Lj2g0019191 Lotus japonicus HOM05D000513 ORTHO05D008786 9.1e-60 233.8 158 70.9
Medtr5g030600 Medicago truncatula HOM05D000513 ORTHO05D008786 2.8e-53 212.2 159 67.3
Psat0s2039g0040 Pisum sativum HOM05D000513 ORTHO05D008786 6.3e-53 211.1 149 68.5
Psat4g119560 Pisum sativum HOM05D000513 ORTHO05D008786 4.1e-52 208.4 159 64.2
arahy.Tifrunner.gnm1.ann1.3T1LZQ Arachis hypogaea HOM05D000513 ORTHO05D008786 5.3e-52 208.0 158 63.3
arahy.Tifrunner.gnm1.ann1.H0PV48 Arachis hypogaea HOM05D000513 ORTHO05D008786 5.3e-52 208.0 158 63.3
vmacro05469 Vaccinium macrocarpon HOM05D000513 ORTHO05D008786 4.7e-40 168.3 158 51.9
Actinidia11936 Actinidia chinensis HOM05D000513 ORTHO05D008786 1.0e-39 167.2 158 51.9
CSS0024844 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D008786 1.0e-39 167.2 158 53.2
Cfa006813 Carpinus fangiana HOM05D000513 ORTHO05D008786 4.0e-39 165.2 158 50.6
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 5.2e-39 164.9 155 51.0
TWI74G1055 Tripterygium wilfordii HOM05D000513 ORTHO05D008786 6.8e-39 164.5 160 50.6
Manes.13G105280 Manihot esculenta HOM05D000513 ORTHO05D008786 8.8e-39 164.1 155 51.6
Ciclev10025051m.g Citrus clementina HOM05D000513 ORTHO05D008786 1.2e-38 163.7 157 51.0
Rhsim10G0083900 Rhododendron simsii HOM05D000513 ORTHO05D008786 1.2e-38 163.7 158 50.6
Rhsim10G0085600 Rhododendron simsii HOM05D000513 ORTHO05D008786 1.2e-38 163.7 158 50.6
Psat2g135800 Pisum sativum HOM05D000513 ORTHO05D008786 5.7e-38 161.4 125 64.8
QL06p037723 Quercus lobata HOM05D000513 ORTHO05D008786 7.5e-38 161.0 154 50.6
Dinv26991 Davidia involucrata HOM05D000513 ORTHO05D008786 9.8e-38 160.6 156 51.3
Thecc.01G081900 Theobroma cacao HOM05D000513 ORTHO05D008786 2.2e-37 159.5 158 50.6
Atru.chr3.1124 Acer truncatum HOM05D000513 ORTHO05D008786 3.7e-37 158.7 149 51.0
Atru.chr3.1133 Acer truncatum HOM05D000513 ORTHO05D008786 3.7e-37 158.7 149 51.0
Potri.007G009600 Populus trichocarpa HOM05D000513 ORTHO05D008786 3.7e-37 158.7 155 48.4
Prupe.6G211300 Prunus persica HOM05D000513 ORTHO05D008786 6.3e-37 157.9 157 50.3
Duzib147G0116 Durio zibethinus HOM05D000513 ORTHO05D008786 8.3e-37 157.5 150 51.3
FAN28G1163 Fragaria x ananassa HOM05D000513 ORTHO05D008786 8.3e-37 157.5 158 50.6
Eucgr.H02402 Eucalyptus grandis HOM05D000513 ORTHO05D008786 1.1e-36 157.1 154 48.7
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 2.4e-36 156.0 158 48.7
Nn5g29741 Nelumbo nucifera HOM05D000513 ORTHO05D008786 2.4e-36 156.0 158 48.7
RcHm_v2.0_Chr2g0109671 Rosa chinensis HOM05D000513 ORTHO05D008786 3.1e-36 155.6 155 52.3
FvH4_1g18810 Fragaria vesca HOM05D000513 ORTHO05D008786 7.0e-36 154.5 158 49.4
Gorai.003G034900 Gossypium raimondii HOM05D000513 ORTHO05D008786 1.6e-35 153.3 158 48.7
MD01G1046500 Malus domestica HOM05D000513 ORTHO05D008786 1.6e-35 153.3 158 49.4
MBI16_g14672_MAGBIO Magnolia biondii HOM05D000513 ORTHO05D008786 2.7e-35 152.5 158 47.5
Gohir.A02G147100 Gossypium hirsutum HOM05D000513 ORTHO05D008786 3.5e-35 152.1 158 48.1
GSVIVG01003706001 Vitis vinifera HOM05D000513 ORTHO05D008786 3.5e-35 152.1 155 45.8
MD16G1281800 Malus domestica HOM05D000513 ORTHO05D008786 5.9e-35 151.4 158 49.4
TAR376G0439 Trochodendron aralioides HOM05D000513 ORTHO05D008786 5.9e-35 151.4 158 48.7
Ca_06074_v3 Cicer arietinum L. HOM05D000513 ORTHO05D008786 1.0e-34 150.6 97 72.2
PGR102G2893 Punica granatum HOM05D000513 ORTHO05D008786 2.3e-34 149.4 145 51.0
Sopen02g036350 Solanum pennellii HOM05D000513 ORTHO05D008786 2.3e-34 149.4 158 46.2
Hund16610 Selenicereus undatus HOM05D000513 ORTHO05D008786 2.9e-34 149.1 156 46.2
CANSAT01G1148 Cannabis sativa HOM05D000513 ORTHO05D008786 3.8e-34 148.7 158 47.5
Migut.H00304 Erythranthe guttata HOM05D000513 ORTHO05D008786 1.5e-33 146.7 155 47.1
Ah.02g116030 Amaranthus hybridus HOM05D000513 ORTHO05D008786 2.5e-33 146.0 158 46.8
Oeu054738.1 Olea europaea HOM05D000513 ORTHO05D008786 2.5e-33 146.0 158 44.9
MSTRG.23632 Avicennia marina HOM05D000513 ORTHO05D008786 4.3e-33 145.2 158 44.9
FAN19G0940 Fragaria x ananassa HOM05D002219 ORTHO05D008786 4.3e-33 145.2 157 48.4
CsaV3_6G044620 Cucumis sativus L. HOM05D000513 ORTHO05D008786 5.6e-33 144.8 145 46.2
THA.LOC104798691 Tarenaya hassleriana HOM05D000513 ORTHO05D008786 5.6e-33 144.8 146 51.4
EL10Ac5g11686 Beta vulgaris HOM05D000513 ORTHO05D008786 7.3e-33 144.4 158 44.9
Sc16g0000810 Simmondsia chinensis HOM05D000513 ORTHO05D008786 7.3e-33 144.4 160 43.1
MELO3C007685.2 Cucumis melo HOM05D000513 ORTHO05D008786 1.0e-31 140.6 145 46.9
Sed0018484 Sechium edule HOM05D000513 ORTHO05D008786 1.4e-31 140.2 145 46.2
Cc07_g07700 Coffea canephora HOM05D000513 ORTHO05D008786 1.8e-31 139.8 158 47.5
CAN.G1061.14 Capsicum annuum HOM05D000513 ORTHO05D008786 2.3e-31 139.4 160 44.4
AUR62036526 Chenopodium quinoa HOM05D000513 ORTHO05D008786 3.0e-31 139.0 158 46.2
Lj4C174G10 Lonicera japonica HOM05D000513 ORTHO05D008786 3.0e-31 139.0 180 45.0
PSO675G3269 Papaver somniferum HOM05D000513 ORTHO05D008786 1.2e-30 137.1 158 45.6
ATR0767G255 Amborella trichopoda HOM05D000513 ORTHO05D008786 1.7e-29 133.3 158 43.0
Nitab4.5_0000396g0260 Nicotiana tabacum HOM05D000513 ORTHO05D008786 1.1e-28 130.6 183 37.7
Aa31LG1G16370 Aethionema arabicum HOM05D000513 ORTHO05D008786 2.7e-27 125.9 145 44.1
SalBow3G2525 Salvia bowleyana HOM05D000513 ORTHO05D008786 2.3e-26 122.9 146 43.2
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 8.6e-26 120.9 129 47.3
Sp2g28790 Schrenkiella parvula HOM05D000513 ORTHO05D008786 1.5e-22 110.2 145 43.4
BcaC01g02842 Brassica carinata HOM05D000513 ORTHO05D008786 2.9e-21 105.9 146 43.8
Haze_03946 Corylus avellana HOM05D000513 ORTHO05D008786 3.7e-21 105.5 101 49.5
Medtr7g037650 Medicago truncatula HOM05D002807 ORTHO05D008786 3.2e-20 102.4 80 66.2
SEGI_23629 Sequoiadendron giganteum HOM05D000513 ORTHO05D008786 1.2e-19 100.5 158 36.7
BraA06t26185Z Brassica rapa HOM05D000513 ORTHO05D008786 1.6e-19 100.1 146 40.4
FAN23G2932 Fragaria x ananassa HOM05D000513 ORTHO05D008786 6.0e-19 98.2 125 39.2
AagrBONN_evm.TU.Sc2ySwM_369.556 Anthoceros agrestis HOM05D000513 ORTHO05D008786 7.3e-17 91.3 156 35.3
Cpa.g.sc129.30 Carica papaya HOM05D000513 ORTHO05D008786 7.3e-17 91.3 102 42.2
BcaC01g02815 Brassica carinata HOM05D000513 ORTHO05D008786 2.1e-16 89.7 146 35.6
C03p59970 Brassica napus HOM05D000513 ORTHO05D008786 2.1e-16 89.7 146 35.6
BolC3t18261H Brassica oleracea HOM05D000513 ORTHO05D008786 2.1e-16 89.7 146 35.6
HanXRQChr12g0377071 Helianthus annuus HOM05D000513 ORTHO05D008786 6.2e-16 88.2 119 45.4
Mapoly0015s0090 Marchantia polymorpha HOM05D000513 ORTHO05D008786 8.1e-16 87.8 155 33.5
SGA_v2.0_scaffold121G33106 Striga asiatica HOM05D000513 ORTHO05D008786 2.7e-11 72.8 158 27.8
Sed0004653 Sechium edule HOM05D000513 ORTHO05D003825 3.9e-10 68.9 141 25.5
Mapoly0033s0170 Marchantia polymorpha HOM05D000513 ORTHO05D003825 1.9e-09 66.6 152 25.7
Pp3c14_21270 Physcomitrium patens HOM05D000513 ORTHO05D008786 2.5e-09 66.2 144 27.8
Solyc02g091770.3 Solanum lycopersicum HOM05D000513 ORTHO05D008786 2.5e-09 66.2 64 50.0
Medtr4g094595 Medicago truncatula HOM05D000513 ORTHO05D003825 7.3e-09 64.7 141 26.2
A06p32570 Brassica napus HOM05D000513 ORTHO05D008786 1.6e-08 63.5 104 37.5
ClCG01G024360 Citrullus lanatus HOM05D000513 ORTHO05D003825 2.1e-08 63.2 141 24.8
CsaV3_6G051510 Cucumis sativus L. HOM05D000513 ORTHO05D003825 2.1e-08 63.2 140 27.1
Carub.0007s2309 Capsella rubella HOM05D000513 ORTHO05D003825 2.8e-08 62.8 153 24.8
Nitab4.5_0000093g0200 Nicotiana tabacum HOM05D000513 ORTHO05D008786 2.8e-08 62.8 64 46.9
CAN.G257.22 Capsicum annuum HOM05D000513 ORTHO05D003825 3.6e-08 62.4 133 27.1
Pp3c7_22420 Physcomitrium patens HOM05D000513 ORTHO05D003825 3.6e-08 62.4 155 24.5
AT4G18240 Arabidopsis thaliana HOM05D000513 ORTHO05D003825 4.7e-08 62.0 140 24.3
BcaB02g08602 Brassica carinata HOM05D000513 ORTHO05D003825 4.7e-08 62.0 140 24.3
QL05p059401 Quercus lobata HOM05D000513 ORTHO05D003825 4.7e-08 62.0 152 24.3
Aa31LG6G930 Aethionema arabicum HOM05D000513 ORTHO05D003825 6.2e-08 61.6 140 25.7
AL7G36170 Arabidopsis lyrata HOM05D000513 ORTHO05D003825 6.2e-08 61.6 140 24.3
BcaB04g18467 Brassica carinata HOM05D000513 ORTHO05D003825 6.2e-08 61.6 140 24.3
Peaxi162Scf00291g00210 Petunia axillaris HOM05D000513 ORTHO05D003825 6.2e-08 61.6 133 27.8
Sabra16G0231300 Salix brachista HOM05D000513 ORTHO05D003825 6.2e-08 61.6 141 24.8
BcaC07g38128 Brassica carinata HOM05D000513 ORTHO05D003825 8.1e-08 61.2 140 24.3
A08p13610 Brassica napus HOM05D000513 ORTHO05D003825 8.1e-08 61.2 140 24.3
BolC8t48555H Brassica oleracea HOM05D000513 ORTHO05D003825 8.1e-08 61.2 140 24.3
BraA08t33347Z Brassica rapa HOM05D000513 ORTHO05D003825 8.1e-08 61.2 140 24.3
CSS0046806 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D003825 8.1e-08 61.2 141 24.8
Os01g0720600 Oryza sativa ssp. japonica HOM05D000513 ORTHO05D003825 8.1e-08 61.2 141 24.8
Solyc02g071040.3 Solanum lycopersicum HOM05D000513 ORTHO05D003825 8.1e-08 61.2 133 27.1
Sopen02g020100 Solanum pennellii HOM05D000513 ORTHO05D003825 8.1e-08 61.2 133 27.1
PGSC0003DMG400008322 Solanum tuberosum HOM05D000513 ORTHO05D003825 8.1e-08 61.2 133 27.1
Zm00001eb353810 Zea mays HOM05D000513 ORTHO05D003825 8.1e-08 61.2 142 24.6
CARHR224990 Cardamine hirsuta HOM05D000513 ORTHO05D003825 1.1e-07 60.8 140 24.3
GSVIVG01021404001 Vitis vinifera HOM05D000513 ORTHO05D003825 1.1e-07 60.8 139 25.9
Ah.14g086610 Amaranthus hybridus HOM05D000513 ORTHO05D003825 1.4e-07 60.5 146 29.5
Sed0016815 Sechium edule HOM05D000513 ORTHO05D003825 1.4e-07 60.5 152 24.3
HPP92_023427 Vanilla planifolia HOM05D000513 ORTHO05D003825 1.4e-07 60.5 141 25.5
AagrBONN_evm.TU.Sc2ySwM_344.145 Anthoceros agrestis HOM05D000513 ORTHO05D003825 1.8e-07 60.1 143 25.9
arahy.Tifrunner.gnm1.ann1.5JCE23 Arachis hypogaea HOM05D000513 ORTHO05D003825 1.8e-07 60.1 141 24.8
Peaxi162Scf00939g00116 Petunia axillaris HOM05D000513 ORTHO05D008786 1.8e-07 60.1 63 46.0
Sp7g15870 Schrenkiella parvula HOM05D000513 ORTHO05D003825 1.8e-07 60.1 140 24.3
MELO3C007155.2 Cucumis melo HOM05D000513 ORTHO05D003825 2.3e-07 59.7 140 25.7
Thhalv10024297m.g Eutrema salsugineum HOM05D000513 ORTHO05D003825 2.3e-07 59.7 140 24.3
Nitab4.5_0011941g0020 Nicotiana tabacum HOM05D000513 ORTHO05D003825 2.3e-07 59.7 133 26.3
arahy.Tifrunner.gnm1.ann1.MB9SFC Arachis hypogaea HOM05D000513 ORTHO05D003825 3.1e-07 59.3 151 27.2
Lalb_Chr13g0291431 Lupinus albus HOM05D000513 ORTHO05D003825 3.1e-07 59.3 141 23.4
Sc05g0006470 Simmondsia chinensis HOM05D000513 ORTHO05D003825 3.1e-07 59.3 141 25.5
Eucgr.D00323 Eucalyptus grandis HOM05D000513 ORTHO05D003825 5.2e-07 58.5 152 23.0
Glyma.05G127800 Glycine max HOM05D000513 ORTHO05D003825 5.2e-07 58.5 152 23.7
Aqoxy1G01800 Aquilegia oxysepala HOM05D000513 ORTHO05D003825 6.8e-07 58.2 152 24.3
PSO675G5345 Papaver somniferum HOM05D000513 ORTHO05D003825 6.8e-07 58.2 163 23.9
BcaC01g02814 Brassica carinata HOM05D033008 ORTHO05D032870 8.9e-07 57.8 59 50.8
Nn3g20850 Nelumbo nucifera HOM05D000513 ORTHO05D003825 8.9e-07 57.8 141 24.1
Nn4g26493 Nelumbo nucifera HOM05D000513 ORTHO05D003825 8.9e-07 57.8 141 24.8
Nitab4.5_0000170g0160 Nicotiana tabacum HOM05D000513 ORTHO05D003825 8.9e-07 57.8 135 24.4
CANSAT35G1298 Cannabis sativa HOM05D000513 ORTHO05D003825 1.5e-06 57.0 164 23.2
AUR62030255 Chenopodium quinoa HOM05D000513 ORTHO05D003825 1.5e-06 57.0 141 24.8
Cre13.g579598 Chlamydomonas reinhardtii HOM05D000513 ORTHO05D005786 1.5e-06 57.0 151 27.2
Solyc07g042830.4 Solanum lycopersicum HOM05D000513 ORTHO05D003825 1.5e-06 57.0 138 23.2
HanXRQChr04g0117251 Helianthus annuus HOM05D000513 ORTHO05D003825 2.0e-06 56.6 146 26.0
PSO541G3505 Papaver somniferum HOM05D000513 ORTHO05D003825 2.6e-06 56.2 163 23.3
Sopen07g022460 Solanum pennellii HOM05D000513 ORTHO05D003825 2.6e-06 56.2 136 24.3
MBI07_g07819_MAGBIO Magnolia biondii HOM05D000513 ORTHO05D003825 3.4e-06 55.8 141 23.4
RcHm_v2.0_Chr4g0384801 Rosa chinensis HOM05D000513 ORTHO05D003825 3.4e-06 55.8 156 25.6
SGA_v2.0_scaffold333G49008 Striga asiatica HOM05D000513 ORTHO05D003825 3.4e-06 55.8 144 24.3
unitig_26.g9124 Utricularia gibba HOM05D000513 ORTHO05D003825 3.4e-06 55.8 144 25.7
MSTRG.19407 Avicennia marina HOM05D000513 ORTHO05D003825 4.4e-06 55.5 158 24.7
Migut.M00940 Erythranthe guttata HOM05D000513 ORTHO05D003825 4.4e-06 55.5 135 28.1
Lj1C1184T1 Lonicera japonica HOM05D000513 ORTHO05D003825 4.4e-06 55.5 152 22.4
DCAR_020450 Daucus carota HOM05D000513 ORTHO05D003825 5.8e-06 55.1 154 24.0
Lsat_1_v5_gn_5_81081 Lactuca sativa HOM05D000513 ORTHO05D003825 5.8e-06 55.1 158 24.1
Prupe.6G144700 Prunus persica HOM05D000513 ORTHO05D003825 7.6e-06 54.7 159 24.5
DCAR_027953 Daucus carota HOM05D000513 ORTHO05D003825 9.9e-06 54.3 133 23.3


User provided reference genes

Program Settings