Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 5.1e-305 1050.4 592 100.0
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 4.8e-247 857.8 598 84.1
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 2.7e-234 815.5 599 77.0
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 2.7e-226 788.9 600 76.5
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 6.6e-172 608.2 607 59.3
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 8.1e-170 601.3 607 60.1
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 6.4e-167 591.7 638 59.1
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 1.0e-159 567.8 629 57.6
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 9.3e-158 561.2 663 54.8
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 9.3e-158 561.2 663 54.8
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 1.2e-149 534.3 619 55.7
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 6.3e-146 521.9 642 51.7
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 1.4e-145 520.8 631 50.9
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 1.0e-140 504.6 638 50.5
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 1.0e-140 504.6 632 49.2
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 3.0e-140 503.1 632 49.8
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 1.3e-138 497.7 649 49.5
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 1.7e-138 497.3 622 49.5
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 2.2e-138 496.9 631 48.5
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 3.4e-136 489.6 634 49.8
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 1.1e-134 484.6 633 47.6
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.5e-134 483.4 630 48.3
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 5.5e-134 482.3 627 46.6
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 7.2e-134 481.9 627 46.7
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.8e-132 477.2 627 46.4
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 3.9e-132 476.1 620 46.3
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 2.6e-131 473.4 625 46.6
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 3.3e-131 473.0 629 49.9
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 1.3e-130 471.1 637 47.4
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 2.2e-130 470.3 628 47.6
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 2.8e-130 469.9 630 49.7
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.8e-129 467.2 620 49.0
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 7.0e-129 465.3 625 49.8
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 5.9e-128 462.2 623 49.3
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.7e-127 460.7 623 47.0
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 2.9e-127 459.9 623 49.4
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 3.8e-127 459.5 629 48.5
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 5.5e-126 455.7 623 49.0
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 4.7e-125 452.6 621 46.1
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 6.7e-124 448.7 639 44.4
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 2.0e-123 447.2 613 44.7
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 2.6e-123 446.8 658 44.4
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 2.6e-123 446.8 682 45.3
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 9.7e-123 444.9 626 46.3
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 6.3e-122 442.2 647 46.7
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 4.5e-120 436.0 651 45.8
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.7e-119 434.1 572 49.0
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 2.2e-119 433.7 623 46.7
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 4.2e-118 429.5 623 43.0
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 4.2e-118 429.5 631 44.4
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 2.1e-117 427.2 492 54.1
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.0e-116 424.9 712 43.4
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 1.4e-116 424.5 712 43.7
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 3.0e-116 423.3 614 46.6
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 1.5e-115 421.0 639 46.0
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 2.0e-115 420.6 628 44.9
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 2.8e-114 416.8 593 47.6
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 1.4e-113 414.5 622 44.1
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 5.4e-113 412.5 617 44.6
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 9.1e-113 411.8 588 47.6
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 3.5e-112 409.8 585 48.0
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 5.9e-112 409.1 619 44.7
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 7.7e-112 408.7 635 43.1
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 1.7e-111 407.5 639 43.5
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 1.7e-111 407.5 636 45.1
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 2.2e-111 407.1 637 43.5
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 1.1e-110 404.8 612 45.4
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 7.2e-110 402.1 633 44.5
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 1.6e-109 401.0 616 43.8
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 2.7e-109 400.2 640 43.8
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 1.8e-108 397.5 628 44.4
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 3.0e-108 396.7 640 44.1
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 1.2e-107 394.8 606 44.7
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 5.7e-107 392.5 635 43.5
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 1.3e-106 391.3 634 46.2
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 1.7e-106 391.0 667 40.3
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 4.9e-106 389.4 623 45.7
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 6.3e-106 389.0 528 48.1
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 1.4e-105 387.9 615 40.5
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 1.8e-105 387.5 641 43.4
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 2.4e-105 387.1 623 45.6
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 5.4e-105 386.0 639 41.6
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 5.4e-105 386.0 619 43.9
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 7.0e-105 385.6 615 43.1
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 9.1e-105 385.2 573 46.6
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 3.5e-104 383.3 623 41.6
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 4.5e-104 382.9 640 41.1
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 7.7e-104 382.1 452 53.5
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 6.8e-100 369.0 627 44.0
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 5.7e-99 365.9 631 42.0
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 7.5e-99 365.5 607 43.2
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 5.9e-96 355.9 567 49.0
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 1.9e-94 350.9 634 42.1
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 1.9e-94 350.9 634 42.1
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 4.9e-90 336.3 644 39.1
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 1.2e-88 331.6 644 38.8
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 1.5e-86 324.7 426 48.4
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 8.3e-82 308.9 626 37.9
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 9.2e-81 305.4 453 42.8
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 3.7e-74 283.5 659 37.2
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 3.6e-69 266.9 569 35.1
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 3.8e-66 256.9 548 35.8
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 4.6e-64 250.0 413 39.0
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 1.1e-62 245.4 267 51.7
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 1.1e-60 238.8 525 35.6
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.2e-59 235.3 240 56.2
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 2.6e-51 207.6 370 43.0
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 2.4e-44 184.5 298 43.0
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 3.2e-41 174.1 494 30.8
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 5.3e-28 130.2 344 34.0
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 6.9e-28 129.8 263 33.1
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 9.0e-28 129.4 491 26.7
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 1.0e-26 125.9 120 58.3
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.6e-24 117.5 113 54.0
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 5.1e-23 113.6 117 50.4
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 5.7e-22 110.2 99 56.6
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 7.4e-22 109.8 180 36.7
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 9.7e-22 109.4 575 24.2
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 8.2e-21 106.3 121 54.5
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 1.1e-20 105.9 438 27.4
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.8e-20 105.1 78 64.1
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.1e-20 104.4 75 65.3
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 4.5e-19 100.5 181 45.9
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.9e-17 95.1 179 41.3
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.2e-16 92.4 93 52.7
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 1.1e-14 85.9 181 39.2
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 1.5e-14 85.5 137 42.3
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 1.3e-13 82.4 290 27.9
Glyma.11G112400 Glycine max HOM05D005482 ORTHO05D006502 8.2e-13 79.7 58 77.6
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 5.0e-10 70.5 70 52.9
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.5e-09 68.9 114 41.2
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 3.6e-08 64.3 121 38.0
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 4.0e-07 60.8 87 42.5
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 8.8e-07 59.7 64 43.8
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 2.6e-06 58.2 90 47.8


User provided reference genes

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