Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 0.0e+00 1244.2 646 100.0
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 1.6e-304 1048.9 643 83.8
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 3.6e-280 968.0 648 78.5
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 1.4e-271 939.5 525 91.6
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 3.4e-270 934.9 646 74.5
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 4.4e-270 934.5 646 74.6
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 2.0e-262 909.1 648 72.7
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 9.9e-262 906.7 536 85.6
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 3.5e-259 898.3 646 71.5
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 1.5e-257 892.9 647 73.1
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 1.5e-257 892.9 647 73.1
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 2.1e-251 872.5 660 69.5
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.5e-246 856.3 648 69.3
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 1.5e-241 839.7 648 68.4
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.5e-241 839.7 647 68.6
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 1.5e-241 839.7 653 67.8
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 4.3e-241 838.2 649 68.4
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 9.0e-239 830.5 656 68.3
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 1.3e-237 826.6 652 67.3
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 3.8e-237 825.1 650 66.2
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 4.9e-237 824.7 655 65.5
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 4.9e-237 824.7 671 65.7
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 9.3e-236 820.5 656 66.2
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 2.6e-230 802.4 614 68.2
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 7.6e-230 800.8 654 64.5
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 1.1e-228 797.0 639 64.8
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 6.0e-227 791.2 643 63.9
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 3.7e-224 781.9 650 63.1
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 1.1e-223 780.4 660 62.6
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 1.4e-223 780.0 668 62.9
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 5.3e-223 778.1 654 64.2
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.0e-222 776.2 656 62.2
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 5.0e-221 771.5 654 61.9
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 6.5e-221 771.2 661 61.0
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 4.2e-220 768.5 657 62.3
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 1.2e-219 766.9 632 63.6
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 1.3e-218 763.5 655 61.8
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 5.1e-218 761.5 654 61.2
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 1.1e-217 760.4 667 62.8
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 1.9e-217 759.6 662 60.3
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 2.4e-215 752.7 656 58.8
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 3.1e-215 752.3 658 61.2
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 6.9e-215 751.1 657 60.9
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 1.5e-214 750.0 658 60.3
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 2.0e-214 749.6 671 60.2
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 2.0e-214 749.6 639 61.0
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 5.9e-214 748.0 673 61.2
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 1.0e-213 747.3 647 60.9
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 1.0e-213 747.3 656 62.3
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 5.0e-213 745.0 658 60.2
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 9.4e-212 740.7 657 60.9
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 7.9e-211 737.6 647 59.8
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 8.8e-210 734.2 650 62.0
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 1.1e-209 733.8 638 59.7
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 3.3e-209 732.3 660 59.5
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 2.2e-208 729.6 649 59.9
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 1.1e-207 727.2 646 60.4
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 3.1e-207 725.7 638 60.5
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 4.1e-207 725.3 639 60.9
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 2.6e-206 722.6 653 60.3
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 1.0e-205 720.7 654 59.6
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 1.7e-205 719.9 701 55.9
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 5.0e-205 718.4 634 61.0
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 5.0e-205 718.4 663 58.8
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.4e-204 716.8 639 60.9
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 1.4e-204 716.8 664 57.8
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 2.5e-204 716.1 655 58.5
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 2.5e-204 716.1 654 58.6
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 3.2e-204 715.7 652 60.0
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 5.5e-204 714.9 649 59.0
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 3.6e-203 712.2 681 58.1
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 3.0e-202 709.1 656 57.0
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 9.7e-201 704.1 648 58.5
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 9.7e-201 704.1 658 57.8
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 1.7e-200 703.4 654 58.0
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 2.6e-198 696.0 649 57.5
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 7.7e-198 694.5 613 60.7
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 3.8e-197 692.2 654 56.3
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 2.7e-195 686.0 654 56.0
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 8.0e-195 684.5 653 55.7
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 6.3e-184 648.3 500 65.4
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 2.0e-182 643.3 638 52.7
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.7e-181 640.2 569 61.5
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 8.5e-181 637.9 596 59.4
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 4.7e-179 632.1 684 50.6
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 6.1e-179 631.7 658 52.4
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 2.7e-174 616.3 680 51.6
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 1.3e-173 614.0 644 53.9
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 1.9e-172 610.1 484 64.0
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 2.9e-168 596.3 666 52.3
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 7.8e-166 588.2 538 59.1
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 1.4e-162 577.4 653 50.2
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 3.4e-161 572.8 694 48.3
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 1.0e-157 561.2 529 60.7
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 3.3e-156 556.2 502 56.6
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 4.9e-152 542.3 543 53.2
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 3.5e-150 536.2 607 51.4
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 6.2e-147 525.4 484 58.7
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.6e-131 474.2 652 42.0
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 7.4e-124 448.7 439 56.9
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 3.0e-117 426.8 286 72.7
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 5.1e-117 426.0 746 36.3
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 2.9e-112 410.2 690 39.3
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 3.0e-109 400.2 288 75.3
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 3.4e-105 386.7 383 57.4
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 2.2e-99 367.5 291 67.7
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 8.2e-99 365.5 577 38.6
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 2.0e-97 360.9 337 60.5
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 4.5e-97 359.8 649 36.2
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 2.7e-94 350.5 292 64.4
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 1.7e-83 314.7 333 53.2
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 7.7e-81 305.8 453 45.9
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 1.9e-79 301.2 516 37.0
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.6e-65 255.0 206 66.5
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 6.8e-61 239.6 197 63.5
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 1.7e-59 235.0 177 64.4
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 1.7e-56 224.9 381 39.1
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 8.9e-53 212.6 200 57.5
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 8.9e-53 212.6 383 42.0
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 6.4e-51 206.5 149 65.8
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 5.6e-47 193.4 155 60.6
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 1.9e-42 178.3 720 29.2
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 2.7e-41 174.5 122 63.1
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 7.8e-41 172.9 320 34.4
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 3.4e-28 131.0 174 48.9
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 1.4e-21 109.0 61 91.8
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 1.5e-20 105.5 94 58.5
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 4.9e-19 100.5 63 76.2
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 1.2e-17 95.9 63 73.0
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 5.1e-16 90.5 93 49.5
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 5.3e-13 80.5 94 50.0
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 6.9e-13 80.1 86 51.2
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.2e-12 79.3 55 69.1
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 1.5e-12 79.0 159 34.6
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 4.5e-12 77.4 58 63.8
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 6.4e-11 73.6 86 50.0
Cre03.g145667 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 6.7e-08 63.5 99 35.4


User provided reference genes

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