Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G199232 Glycine max HOM05D003192 ORTHO05D003596 2.7e-86 322.0 169 100.0
Glyma.01G023100 Glycine max HOM05D003192 ORTHO05D003596 3.6e-62 241.9 228 61.8
Phvul.002G147100 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 5.6e-31 138.3 237 43.0
CANSAT01G3047 Cannabis sativa HOM05D003192 ORTHO05D003596 2.3e-29 132.9 230 37.0
Duzib147G1583 Durio zibethinus HOM05D003192 ORTHO05D003596 1.7e-27 126.7 233 37.8
Actinidia06514 Actinidia chinensis HOM05D003192 ORTHO05D003596 1.1e-26 124.0 197 40.6
Gohir.A11G050500 Gossypium hirsutum HOM05D003192 ORTHO05D003596 5.4e-26 121.7 233 37.8
Potri.001G415800 Populus trichocarpa HOM05D003192 ORTHO05D003596 7.0e-26 121.3 230 37.0
Potri.011G131500 Populus trichocarpa HOM05D003192 ORTHO05D003596 9.2e-26 120.9 228 36.8
VMungo1215G1834 Vigna mungo HOM05D003192 ORTHO05D003596 1.2e-25 120.6 240 37.5
Manes.13G100000 Manihot esculenta HOM05D003192 ORTHO05D003596 2.7e-25 119.4 230 35.7
Glyma.18G147000 Glycine max HOM05D003192 ORTHO05D003596 8.6e-24 114.4 233 38.6
Gorai.003G037800 Gossypium raimondii HOM05D003192 ORTHO05D003596 8.6e-24 114.4 231 35.5
VMungo0251G1378 Vigna mungo HOM05D003192 ORTHO05D003596 1.5e-23 113.6 230 37.8
Lalb_Chr05g0228511 Lupinus albus HOM05D003192 ORTHO05D003596 5.6e-23 111.7 233 37.8
Gohir.D03G036033 Gossypium hirsutum HOM05D003192 ORTHO05D003596 7.3e-23 111.3 231 35.1
Gohir.D11G216300 Gossypium hirsutum HOM05D003192 ORTHO05D003596 3.6e-22 109.0 233 35.2
CiPaw.08G140100 Carya illinoinensis HOM05D003192 ORTHO05D003596 1.1e-21 107.5 232 34.1
Glyma.08G279600 Glycine max HOM05D003192 ORTHO05D003596 2.3e-21 106.3 233 39.5
Gohir.A02G144501 Gossypium hirsutum HOM05D003192 ORTHO05D003596 2.3e-21 106.3 233 33.5
Phvul.003G289000 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 5.2e-21 105.1 233 35.2
Actinidia25308 Actinidia chinensis HOM05D003192 ORTHO05D003596 1.5e-20 103.6 227 32.6
CsaV3_6G044990 Cucumis sativus L. HOM05D003192 ORTHO05D003596 1.5e-20 103.6 233 32.2
Gohir.A11G207000 Gossypium hirsutum HOM05D003192 ORTHO05D003596 2.0e-20 103.2 233 35.2
BcaB03g12309 Brassica carinata HOM05D003192 ORTHO05D003596 3.4e-20 102.4 230 34.3
Thhalv10027141m.g Eutrema salsugineum HOM05D003192 ORTHO05D003596 3.4e-20 102.4 230 35.2
Sabra11G0118600 Salix brachista HOM05D003192 ORTHO05D003596 3.4e-20 102.4 228 33.8
CSS0015283 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 4.4e-20 102.1 210 35.7
Carub.0007s0215 Capsella rubella HOM05D003192 ORTHO05D003596 5.8e-20 101.7 230 34.8
Duzib187G1957 Durio zibethinus HOM05D003192 ORTHO05D003596 7.5e-20 101.3 233 33.9
C03p78760 Brassica napus HOM05D003192 ORTHO05D003596 9.8e-20 100.9 233 35.2
BcaC01g00350 Brassica carinata HOM05D003192 ORTHO05D003596 2.9e-19 99.4 233 34.8
Gohir.D11G053800 Gossypium hirsutum HOM05D003192 ORTHO05D003596 2.9e-19 99.4 233 34.3
Rhsim10G0172900 Rhododendron simsii HOM05D003192 ORTHO05D003596 2.9e-19 99.4 230 32.6
PGR031G3296 Punica granatum HOM05D003192 ORTHO05D003596 8.3e-19 97.8 233 32.2
Haze_03871 Corylus avellana HOM05D003192 ORTHO05D003596 1.1e-18 97.4 230 33.5
BolC3t20120H Brassica oleracea HOM05D003192 ORTHO05D003596 1.4e-18 97.1 233 34.3
Lj2g0008675 Lotus japonicus HOM05D003192 ORTHO05D003596 1.9e-18 96.7 141 48.2
Cc07_g14090 Coffea canephora HOM05D003192 ORTHO05D003596 2.4e-18 96.3 230 31.3
BraA08t34266Z Brassica rapa HOM05D003192 ORTHO05D003596 3.2e-18 95.9 233 33.0
Gorai.007G232500 Gossypium raimondii HOM05D003192 ORTHO05D003596 3.2e-18 95.9 233 33.0
Sed0023170 Sechium edule HOM05D003192 ORTHO05D003596 3.2e-18 95.9 233 31.8
Sp7g35710 Schrenkiella parvula HOM05D003192 ORTHO05D003596 5.4e-18 95.1 230 33.0
Sabra16G0282500 Salix brachista HOM05D003192 ORTHO05D003596 1.2e-17 94.0 202 36.1
ClCG01G018360 Citrullus lanatus HOM05D003192 ORTHO05D003596 1.6e-17 93.6 233 30.0
THA.LOC104807671 Tarenaya hassleriana HOM05D003192 ORTHO05D003596 1.6e-17 93.6 230 32.6
MELO3C007714.2 Cucumis melo HOM05D003192 ORTHO05D003596 2.1e-17 93.2 233 30.9
Gorai.007G058900 Gossypium raimondii HOM05D003192 ORTHO05D003596 2.7e-17 92.8 233 33.0
A08p23070 Brassica napus HOM05D003192 ORTHO05D003596 3.5e-17 92.4 234 32.1
SGA_v2.0_scaffold115G32126 Striga asiatica HOM05D003192 ORTHO05D003596 3.5e-17 92.4 230 29.6
CARHR246480 Cardamine hirsuta HOM05D003192 ORTHO05D003596 4.6e-17 92.0 228 33.3
Psat4g119640 Pisum sativum HOM05D003192 ORTHO05D003596 6.0e-17 91.7 168 41.1
Cfa006881 Carpinus fangiana HOM05D003192 ORTHO05D003596 1.3e-16 90.5 230 32.2
Prupe.6G201700 Prunus persica HOM05D003192 ORTHO05D003596 1.3e-16 90.5 230 30.9
Dinv13601 Davidia involucrata HOM05D003192 ORTHO05D003596 1.7e-16 90.1 231 32.0
Aa31LG6G15020 Aethionema arabicum HOM05D003192 ORTHO05D003596 2.3e-16 89.7 230 31.7
Cfa005735 Carpinus fangiana HOM05D003192 ORTHO05D003596 2.3e-16 89.7 230 30.4
Lj4g0006883 Lotus japonicus HOM05D003192 ORTHO05D003596 1.5e-15 87.0 231 33.3
Ca_22609_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 1.9e-15 86.7 233 33.9
Lalb_Chr05g0216371 Lupinus albus HOM05D003192 ORTHO05D003596 1.9e-15 86.7 186 33.9
Sed0023722 Sechium edule HOM05D003192 ORTHO05D003596 1.9e-15 86.7 229 27.9
MBI16_g12462_MAGBIO Magnolia biondii HOM05D003192 ORTHO05D003596 2.5e-15 86.3 228 28.9
Sopen10g017840 Solanum pennellii HOM05D003192 ORTHO05D003596 3.3e-15 85.9 230 29.1
CiPaw.05G029500 Carya illinoinensis HOM05D003192 ORTHO05D003596 4.3e-15 85.5 231 29.4
TWI77G0115 Tripterygium wilfordii HOM05D003192 ORTHO05D003596 4.3e-15 85.5 230 31.3
Solyc10g047540.3 Solanum lycopersicum HOM05D003192 ORTHO05D003596 5.6e-15 85.1 230 29.1
Peaxi162Scf00003g00329 Petunia axillaris HOM05D003192 ORTHO05D003596 1.6e-14 83.6 174 36.2
Medtr5g032080 Medicago truncatula HOM05D003192 ORTHO05D003596 2.1e-14 83.2 167 39.5
Dinv20194 Davidia involucrata HOM05D003192 ORTHO05D003596 2.8e-14 82.8 189 31.7
Dinv29065 Davidia involucrata HOM05D003192 ORTHO05D003596 2.8e-14 82.8 189 31.7
Medtr8g471150 Medicago truncatula HOM05D003192 ORTHO05D003596 6.2e-14 81.6 233 32.2
AT4G38062 Arabidopsis thaliana HOM05D003192 ORTHO05D003596 1.1e-13 80.9 230 30.0
MSTRG.20280 Avicennia marina HOM05D003192 ORTHO05D003596 1.1e-13 80.9 231 29.0
Atru.chr3.1246 Acer truncatum HOM05D003192 ORTHO05D003596 1.4e-13 80.5 230 30.0
PSO210G4022 Papaver somniferum HOM05D003192 ORTHO05D003596 1.4e-13 80.5 231 26.8
Eucgr.I00559 Eucalyptus grandis HOM05D003192 ORTHO05D003596 1.8e-13 80.1 230 27.8
Lj5C230T2 Lonicera japonica HOM05D003192 ORTHO05D003596 1.8e-13 80.1 230 30.9
PSO170G5608 Papaver somniferum HOM05D003192 ORTHO05D003596 1.8e-13 80.1 231 26.8
QL11p025213 Quercus lobata HOM05D003192 ORTHO05D003596 1.8e-13 80.1 231 29.4
vmacro13008 Vaccinium macrocarpon HOM05D003192 ORTHO05D003596 1.8e-13 80.1 230 29.1
FvH4_1g19631 Fragaria vesca HOM05D003192 ORTHO05D003596 2.3e-13 79.7 230 30.4
Migut.B00551 Erythranthe guttata HOM05D003192 ORTHO05D003596 3.1e-13 79.3 231 29.0
MD01G1039400 Malus domestica HOM05D003192 ORTHO05D003596 4.0e-13 79.0 176 33.0
TAR625G0274 Trochodendron aralioides HOM05D003192 ORTHO05D003596 4.0e-13 79.0 230 31.7
Haze_10522 Corylus avellana HOM05D003192 ORTHO05D003596 5.2e-13 78.6 230 29.1
FAN19G3065 Fragaria x ananassa HOM05D003192 ORTHO05D003596 6.8e-13 78.2 230 30.0
Nitab4.5_0008998g0020 Nicotiana tabacum HOM05D003192 ORTHO05D003596 6.8e-13 78.2 172 37.2
RcHm_v2.0_Chr2g0111201 Rosa chinensis HOM05D003192 ORTHO05D003596 8.9e-13 77.8 230 29.6
PGSC0003DMG400037454 Solanum tuberosum HOM05D003192 ORTHO05D003596 8.9e-13 77.8 230 27.8
Lalb_Chr20g0122921 Lupinus albus HOM05D003192 ORTHO05D003596 1.2e-12 77.4 198 32.8
Ca_00164_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 1.5e-12 77.0 231 28.6
MD05G1047500 Malus domestica HOM05D003192 ORTHO05D003596 1.5e-12 77.0 231 28.6
Ca_22705_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 2.0e-12 76.6 178 34.8
TPR.G14606 Trifolium pratense HOM05D003192 ORTHO05D003596 2.0e-12 76.6 233 31.8
QL06p035789 Quercus lobata HOM05D003192 ORTHO05D003596 2.6e-12 76.3 229 29.7
FAN26G1555 Fragaria x ananassa HOM05D003192 ORTHO05D003596 3.4e-12 75.9 157 35.0
Nitab4.5_0002017g0020 Nicotiana tabacum HOM05D003192 ORTHO05D003596 7.5e-12 74.7 172 35.5
VMungo0299G0001 Vigna mungo HOM05D003192 ORTHO05D003596 9.9e-12 74.3 231 27.3
Ah.01g007410 Amaranthus hybridus HOM05D003192 ORTHO05D003596 1.7e-11 73.6 233 26.6
ECA233G2454 Erigeron canadensis HOM05D000169 ORTHO05D003596 2.9e-11 72.8 213 30.5
Aqoxy5G01385 Aquilegia oxysepala HOM05D003192 ORTHO05D003596 3.7e-11 72.4 192 29.7
QL01p016133 Quercus lobata HOM05D003192 ORTHO05D003596 3.7e-11 72.4 169 32.5
arahy.Tifrunner.gnm1.ann1.T6BZ3D Arachis hypogaea HOM05D003192 ORTHO05D003596 6.4e-11 71.6 176 34.7
FAN28G2653 Fragaria x ananassa HOM05D003192 ORTHO05D003596 6.4e-11 71.6 229 28.8
Hma1.2p1_1093F.1_g256220 Hydrangea macrophylla HOM05D003192 ORTHO05D003596 1.1e-10 70.9 204 29.9
Glyma.15G058300 Glycine max HOM05D003192 ORTHO05D003596 1.4e-10 70.5 231 27.7
FAN23G2642 Fragaria x ananassa HOM05D003192 ORTHO05D003596 1.9e-10 70.1 125 34.4
Glyma.13G256600 Glycine max HOM05D003192 ORTHO05D003596 1.9e-10 70.1 231 27.3
arahy.Tifrunner.gnm1.ann1.CWW4UK Arachis hypogaea HOM05D003192 ORTHO05D003596 2.4e-10 69.7 176 34.1
DCAR_014184 Daucus carota HOM05D003192 ORTHO05D003596 2.4e-10 69.7 230 27.4
AUR62027110 Chenopodium quinoa HOM05D003192 ORTHO05D003596 3.2e-10 69.3 230 26.5
Ciclev10024755m.g Citrus clementina HOM05D003192 ORTHO05D003596 3.2e-10 69.3 166 35.5
QL11p025224 Quercus lobata HOM05D003192 ORTHO05D003596 4.1e-10 68.9 232 26.3
TPR.G39012 Trifolium pratense HOM05D003192 ORTHO05D003596 4.1e-10 68.9 168 35.7
Manes.10G098500 Manihot esculenta HOM05D003192 ORTHO05D003596 7.1e-10 68.2 234 26.5
Atru.chr6.1263 Acer truncatum HOM05D003192 ORTHO05D003596 9.2e-10 67.8 228 25.9
Solyc11g010620.3 Solanum lycopersicum HOM05D003192 ORTHO05D003596 1.2e-09 67.4 133 35.3
arahy.Tifrunner.gnm1.ann1.Y4FDPH Arachis hypogaea HOM05D003192 ORTHO05D003596 1.6e-09 67.0 233 28.8
MSTRG.15688 Avicennia marina HOM05D003192 ORTHO05D003596 1.6e-09 67.0 225 27.1
Nn5g29883 Nelumbo nucifera HOM05D003192 ORTHO05D003596 1.6e-09 67.0 232 28.0
Psat1g214080 Pisum sativum HOM05D003192 ORTHO05D003596 1.6e-09 67.0 172 31.4
Dinv16002 Davidia involucrata HOM05D003192 ORTHO05D003596 2.1e-09 66.6 62 56.5
Sopen11g005420 Solanum pennellii HOM05D003192 ORTHO05D003596 2.1e-09 66.6 153 32.7
arahy.Tifrunner.gnm1.ann1.88QBIW Arachis hypogaea HOM05D003192 ORTHO05D003596 3.5e-09 65.9 229 27.9
ECA238G4297 Erigeron canadensis HOM05D003192 ORTHO05D003596 4.6e-09 65.5 116 38.8
HanXRQChr10g0289971 Helianthus annuus HOM05D003192 ORTHO05D003596 4.6e-09 65.5 154 34.4
AUR62003664 Chenopodium quinoa HOM05D003192 ORTHO05D003596 6.0e-09 65.1 159 34.6
CSS0015843 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 1.0e-08 64.3 179 31.8
Ah.02g123570 Amaranthus hybridus HOM05D003192 ORTHO05D003596 1.3e-08 63.9 96 42.7
AUR62017973 Chenopodium quinoa HOM05D003192 ORTHO05D003596 1.3e-08 63.9 159 34.6
ECA234G2607 Erigeron canadensis HOM05D003192 ORTHO05D003596 1.7e-08 63.5 176 29.5
CDE01G0670 Ceratophyllum demersum HOM05D003192 ORTHO05D003596 2.3e-08 63.2 176 31.8
Nitab4.5_0004153g0070 Nicotiana tabacum HOM05D003192 ORTHO05D003596 2.3e-08 63.2 155 35.5
Actinidia02392 Actinidia chinensis HOM05D003192 ORTHO05D003596 3.9e-08 62.4 229 25.8
Peaxi162Scf00191g00034 Petunia axillaris HOM05D003192 ORTHO05D003596 5.1e-08 62.0 211 26.5
Sc08g0003910 Simmondsia chinensis HOM05D003192 ORTHO05D003596 5.1e-08 62.0 181 28.2
HPP92_014211 Vanilla planifolia HOM05D003192 ORTHO05D003596 5.1e-08 62.0 177 31.6
Ah.03g139960 Amaranthus hybridus HOM05D003192 ORTHO05D003596 6.6e-08 61.6 51 56.9
AUR62012886 Chenopodium quinoa HOM05D003192 ORTHO05D003596 1.1e-07 60.8 233 24.9
MD10G1054400 Malus domestica HOM05D003192 ORTHO05D003596 1.5e-07 60.5 117 37.6
TAR381G0021 Trochodendron aralioides HOM05D003192 ORTHO05D003596 1.5e-07 60.5 230 27.0
EL10Ac6g15204 Beta vulgaris HOM05D003192 ORTHO05D003596 1.9e-07 60.1 158 32.3
Phvul.006G201900 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 1.9e-07 60.1 231 26.0
Thecc.01G090500 Theobroma cacao HOM05D003192 ORTHO05D003596 1.9e-07 60.1 233 27.0
AL7G12570 Arabidopsis lyrata HOM05D003192 ORTHO05D003596 3.3e-07 59.3 158 32.3
arahy.Tifrunner.gnm1.ann1.ND4N8X Arachis hypogaea HOM05D003192 ORTHO05D003596 3.3e-07 59.3 194 28.4
arahy.Tifrunner.gnm1.ann1.QT15T4 Arachis hypogaea HOM05D003192 ORTHO05D003596 3.3e-07 59.3 194 28.4
Zm00001eb053540 Zea mays HOM05D003192 ORTHO05D003596 5.6e-07 58.5 234 23.5
Ah.01g023960 Amaranthus hybridus HOM05D003192 ORTHO05D003596 7.3e-07 58.2 175 30.3
SGA_v2.0_scaffold83G26376 Striga asiatica HOM05D003192 ORTHO05D003596 1.2e-06 57.4 178 28.7
unitig_32.g10709 Utricularia gibba HOM05D003192 ORTHO05D003596 1.2e-06 57.4 230 23.5
CSS0047518 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 1.6e-06 57.0 162 33.3
Prupe.8G069900 Prunus persica HOM05D003192 ORTHO05D003596 1.6e-06 57.0 231 25.5
TWI53G1641 Tripterygium wilfordii HOM05D003192 ORTHO05D003596 1.6e-06 57.0 230 27.0
Dinv24148 Davidia involucrata HOM05D003192 ORTHO05D003596 2.8e-06 56.2 231 26.0
HanXRQChr11g0346961 Helianthus annuus HOM05D003192 ORTHO05D003596 6.2e-06 55.1 146 32.9
PGSC0003DMG400016132 Solanum tuberosum HOM05D003192 ORTHO05D003596 6.2e-06 55.1 62 50.0
Lj2P534T21 Lonicera japonica HOM05D003192 ORTHO05D003596 8.1e-06 54.7 175 29.1


User provided reference genes

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