Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G190100 Glycine max HOM05D007326 ORTHO05D009048 6.6e-54 213.8 107 100.0
Glyma.07G086800 Glycine max HOM05D007326 ORTHO05D009048 8.9e-43 176.8 113 83.2
VMungo0464G1195 Vigna mungo HOM05D007326 ORTHO05D009048 9.9e-34 146.7 113 69.9
Ca_15635_v3 Cicer arietinum L. HOM05D007326 ORTHO05D009048 1.3e-22 109.8 116 56.9
TPR.G1327 Trifolium pratense HOM05D007326 ORTHO05D009048 1.9e-21 105.9 115 56.5
TPR.G14875 Trifolium pratense HOM05D007326 ORTHO05D009048 5.6e-21 104.4 118 59.3
Psat0s2030g0040 Pisum sativum HOM05D007326 ORTHO05D009048 3.1e-19 98.6 114 56.1
Lj1g0012737 Lotus japonicus HOM05D007326 ORTHO05D009048 3.4e-18 95.1 117 54.7
COL.COLO4_03426 Corchorus olitorius HOM05D007326 ORTHO05D009048 7.6e-18 94.0 89 56.2
Gohir.A11G014200 Gossypium hirsutum HOM05D007326 ORTHO05D009048 2.2e-17 92.4 89 56.2
Gohir.D11G014400 Gossypium hirsutum HOM05D007326 ORTHO05D009048 2.2e-17 92.4 89 56.2
Gorai.007G014800 Gossypium raimondii HOM05D007326 ORTHO05D009048 2.2e-17 92.4 89 56.2
Phvul.004G162900 Phaseolus vulgaris HOM05D007326 ORTHO05D009048 1.4e-16 89.7 113 52.2
Atru.chr1.147 Acer truncatum HOM05D007326 ORTHO05D009048 3.2e-16 88.6 91 57.1
Rhsim09G0011500 Rhododendron simsii HOM05D007326 ORTHO05D009048 7.9e-15 84.0 90 55.6
Duzib205G1092 Durio zibethinus HOM05D007326 ORTHO05D009048 1.0e-14 83.6 89 51.7
arahy.Tifrunner.gnm1.ann1.8E5M3M Arachis hypogaea HOM05D007326 ORTHO05D009048 3.9e-14 81.6 109 51.4
Ciclev10006260m.g Citrus clementina HOM05D007326 ORTHO05D009048 6.7e-14 80.9 84 51.2
Actinidia06160 Actinidia chinensis HOM05D007326 ORTHO05D009048 1.9e-13 79.3 88 54.5
arahy.Tifrunner.gnm1.ann1.SUR8QF Arachis hypogaea HOM05D007326 ORTHO05D009048 1.9e-13 79.3 113 48.7
Thecc.03G195600 Theobroma cacao HOM05D007326 ORTHO05D009048 2.5e-13 79.0 107 47.7
Haze_14278 Corylus avellana HOM05D007326 ORTHO05D009048 3.3e-13 78.6 92 46.7
Nitab4.5_0002492g0030 Nicotiana tabacum HOM05D007326 ORTHO05D009048 4.3e-13 78.2 88 51.1
TAR629G0302 Trochodendron aralioides HOM05D007326 ORTHO05D009048 4.3e-13 78.2 79 58.2
Psat7g034120 Pisum sativum HOM05D007326 ORTHO05D009048 5.6e-13 77.8 98 55.1
Manes.06G159200 Manihot esculenta HOM05D007326 ORTHO05D009048 1.3e-12 76.6 88 52.3
PGSC0003DMG400009118 Solanum tuberosum HOM05D007326 ORTHO05D009048 1.3e-12 76.6 89 49.4
Potri.015G017700 Populus trichocarpa HOM05D007326 ORTHO05D009048 1.6e-12 76.3 84 50.0
Nitab4.5_0000714g0090 Nicotiana tabacum HOM05D007326 ORTHO05D009048 2.1e-12 75.9 90 47.8
Peaxi162Scf00550g00426 Petunia axillaris HOM05D007326 ORTHO05D009048 2.1e-12 75.9 88 52.3
Prupe.2G311900 Prunus persica HOM05D007326 ORTHO05D009048 2.1e-12 75.9 85 52.9
ECA232G0297 Erigeron canadensis HOM05D007326 ORTHO05D009048 2.8e-12 75.5 96 47.9
Sc03g0007330 Simmondsia chinensis HOM05D007326 ORTHO05D009048 2.8e-12 75.5 106 45.3
vmacro06547 Vaccinium macrocarpon HOM05D007326 ORTHO05D009048 4.8e-12 74.7 88 52.3
SGA_v2.0_scaffold55G19762 Striga asiatica HOM05D007326 ORTHO05D009048 6.2e-12 74.3 83 47.0
Aa31LG1G16060 Aethionema arabicum HOM05D007326 ORTHO05D009048 8.2e-12 73.9 83 50.6
SGA_v2.0_scaffold105G30435 Striga asiatica HOM05D007326 ORTHO05D009048 8.2e-12 73.9 84 47.6
Ah.04g150610 Amaranthus hybridus HOM05D007326 ORTHO05D009048 1.1e-11 73.6 36 86.1
CiPaw.06G009800 Carya illinoinensis HOM05D007326 ORTHO05D009048 1.4e-11 73.2 90 45.6
TWI23G0901 Tripterygium wilfordii HOM05D007326 ORTHO05D009048 1.4e-11 73.2 89 50.6
Nn4g24310 Nelumbo nucifera HOM05D000291 ORTHO05D009048 1.8e-11 72.8 92 54.3
MSTRG.55 Avicennia marina HOM05D007326 ORTHO05D009048 2.4e-11 72.4 106 40.6
Oeu037093.1 Olea europaea HOM05D007326 ORTHO05D009048 2.4e-11 72.4 98 42.9
Sopen03g023220 Solanum pennellii HOM05D007326 ORTHO05D009048 3.1e-11 72.0 88 46.6
ATR0762G055 Amborella trichopoda HOM05D007326 ORTHO05D009048 4.0e-11 71.6 106 42.5
CAN.G108.61 Capsicum annuum HOM05D007326 ORTHO05D009048 4.0e-11 71.6 89 47.2
Solyc03g083450.1 Solanum lycopersicum HOM05D007326 ORTHO05D009048 4.0e-11 71.6 88 46.6
Dinv29296 Davidia involucrata HOM05D007326 ORTHO05D009048 9.0e-11 70.5 94 46.8
Medtr3g109290 Medicago truncatula HOM05D007326 ORTHO05D009048 9.0e-11 70.5 117 46.2
THA.LOC104819263 Tarenaya hassleriana HOM05D007326 ORTHO05D009048 1.2e-10 70.1 99 44.4
Eucgr.A01472 Eucalyptus grandis HOM05D007326 ORTHO05D009048 2.0e-10 69.3 32 87.5
Thhalv10005175m.g Eutrema salsugineum HOM05D007326 ORTHO05D009048 2.0e-10 69.3 35 80.0
Os06g0157800 Oryza sativa ssp. japonica HOM05D007326 ORTHO05D009048 2.0e-10 69.3 32 87.5
ATR0037G036 Amborella trichopoda HOM05D007326 ORTHO05D009048 2.6e-10 68.9 109 36.7
ClCG01G000490 Citrullus lanatus HOM05D007326 ORTHO05D009048 2.6e-10 68.9 91 41.8
EL10Ac9g21379 Beta vulgaris HOM05D007326 ORTHO05D009048 3.4e-10 68.6 35 82.9
CDE05G0016 Ceratophyllum demersum HOM05D007326 ORTHO05D009048 3.4e-10 68.6 82 48.8
CSS0025602 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 4.5e-10 68.2 90 46.7
CANSAT21G2203 Cannabis sativa HOM05D007326 ORTHO05D009048 4.5e-10 68.2 86 47.7
RcHm_v2.0_Chr1g0381021 Rosa chinensis HOM05D007326 ORTHO05D009048 4.5e-10 68.2 102 48.0
Sed0023316 Sechium edule HOM05D007326 ORTHO05D009048 4.5e-10 68.2 106 44.3
TAR375G0672 Trochodendron aralioides HOM05D007326 ORTHO05D009048 4.5e-10 68.2 77 51.9
Actinidia06153 Actinidia chinensis HOM05D003276 ORTHO05D003809 5.8e-10 67.8 55 63.6
AL8G43810 Arabidopsis lyrata HOM05D007326 ORTHO05D009048 5.8e-10 67.8 32 84.4
BcaB02g09919 Brassica carinata HOM05D007326 ORTHO05D009048 5.8e-10 67.8 35 77.1
MBI06_g08457_MAGBIO Magnolia biondii HOM05D007326 ORTHO05D009048 5.8e-10 67.8 85 47.1
Zm00001eb376510 Zea mays HOM05D007326 ORTHO05D009048 5.8e-10 67.8 40 77.5
FAN06G2911 Fragaria x ananassa HOM05D007326 ORTHO05D009048 1.0e-09 67.0 106 45.3
QL09p009621 Quercus lobata HOM05D007326 ORTHO05D009048 1.0e-09 67.0 88 44.3
CARHR280100 Cardamine hirsuta HOM05D007326 ORTHO05D009048 1.7e-09 66.2 32 81.2
Manes.05G205250 Manihot esculenta HOM05D007326 ORTHO05D009048 1.7e-09 66.2 41 70.7
CSS0006442 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 2.2e-09 65.9 91 48.4
Nitab4.5_0000714g0080 Nicotiana tabacum HOM05D001433 ORTHO05D009048 2.2e-09 65.9 88 46.6
SEGI_38766 Sequoiadendron giganteum HOM05D007326 ORTHO05D009048 2.2e-09 65.9 35 77.1
MCO04G224 Micromonas commoda HOM05D007326 ORTHO05D009048 3.8e-09 65.1 59 59.3
A06p32910 Brassica napus HOM05D007326 ORTHO05D009048 4.9e-09 64.7 89 46.1
BraA06t26223Z Brassica rapa HOM05D007326 ORTHO05D009048 4.9e-09 64.7 89 46.1
Hma1.2p1_0538F.1_g174400 Hydrangea macrophylla HOM05D007326 ORTHO05D009048 4.9e-09 64.7 93 44.1
Lsat_1_v5_gn_9_58181 Lactuca sativa HOM05D007326 ORTHO05D009048 4.9e-09 64.7 101 39.6
Pp3c23_5100 Physcomitrium patens HOM05D007326 ORTHO05D009048 4.9e-09 64.7 50 60.0
Actinidia06159 Actinidia chinensis HOM05D007326 ORTHO05D009048 6.5e-09 64.3 66 56.1
FvH4_7g31800 Fragaria vesca HOM05D000354 ORTHO05D000717 1.1e-08 63.5 74 51.4
Rhsim03G0207100 Rhododendron simsii HOM05D043765 ORTHO05D009048 1.1e-08 63.5 76 48.7
AUR62010038 Chenopodium quinoa HOM05D007326 ORTHO05D009048 1.9e-08 62.8 88 43.2
PGR042G3637 Punica granatum HOM05D007326 ORTHO05D009048 1.9e-08 62.8 86 43.0
Oeu030278.1 Olea europaea HOM05D007326 ORTHO05D009048 2.5e-08 62.4 110 39.1
Rhsim03G0206100 Rhododendron simsii HOM05D043765 ORTHO05D009048 3.2e-08 62.0 76 48.7
FAN03G0879 Fragaria x ananassa HOM05D007326 ORTHO05D009048 4.2e-08 61.6 101 45.5
AUR62013031 Chenopodium quinoa HOM05D007326 ORTHO05D009048 5.5e-08 61.2 91 45.1
Sp2g29160 Schrenkiella parvula HOM05D007326 ORTHO05D009048 5.5e-08 61.2 89 46.1
C03p59560 Brassica napus HOM05D007326 ORTHO05D009048 9.3e-08 60.5 91 47.3
BolC3t18219H Brassica oleracea HOM05D007326 ORTHO05D009048 9.3e-08 60.5 91 47.3
Carub.0008s2698 Capsella rubella HOM05D007326 ORTHO05D009048 1.2e-07 60.1 84 44.0
CsaV3_5G000570 Cucumis sativus L. HOM05D007326 ORTHO05D009048 1.2e-07 60.1 87 46.0
FAN10G1221 Fragaria x ananassa HOM05D007326 ORTHO05D009048 1.2e-07 60.1 112 42.0
Aqoxy7G00103 Aquilegia oxysepala HOM05D007326 ORTHO05D009048 1.6e-07 59.7 89 41.6
AT5G67490 Arabidopsis thaliana HOM05D007326 ORTHO05D009048 2.1e-07 59.3 87 44.8
Mapoly0007s0050 Marchantia polymorpha HOM05D007326 ORTHO05D009048 2.1e-07 59.3 103 38.8
Cpa.g.sc3.64 Carica papaya HOM05D007326 ORTHO05D009048 2.7e-07 58.9 93 45.2
CBR_g41366 Chara braunii HOM05D007326 ORTHO05D009048 4.6e-07 58.2 26 92.3
FAN10G2940 Fragaria x ananassa HOM05D007326 ORTHO05D009048 6.0e-07 57.8 112 41.1
PRCOL_00002099 Prasinoderma coloniale HOM05D007326 ORTHO05D009048 7.9e-07 57.4 31 77.4
Lalb_Chr05g0213391 Lupinus albus HOM05D007326 ORTHO05D009048 1.0e-06 57.0 101 48.5
unitig_8.g3560 Utricularia gibba HOM05D000146 ORTHO05D000178 1.0e-06 57.0 84 40.5
HPP92_020021 Vanilla planifolia HOM05D007326 ORTHO05D009048 1.8e-06 56.2 89 43.8
MELO3C005879.2 Cucumis melo HOM05D007326 ORTHO05D009048 3.9e-06 55.1 87 42.5


User provided reference genes

Program Settings