Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 9.3e-56 219.9 108 100.0
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 3.3e-53 211.5 108 94.4
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 5.5e-48 194.1 105 87.6
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 6.7e-46 187.2 113 83.2
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 2.4e-43 178.7 106 84.0
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 2.5e-37 158.7 92 83.7
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 4.5e-34 147.9 106 76.4
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 5.9e-34 147.5 79 86.1
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 7.6e-34 147.1 108 75.0
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.3e-33 146.4 110 62.7
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.7e-33 146.0 110 62.7
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 1.1e-32 143.3 104 65.4
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 9.3e-32 140.2 107 60.7
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.1e-31 137.5 116 62.1
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.1e-31 137.5 116 62.1
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 6.1e-31 137.5 107 58.9
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 7.9e-31 137.1 107 58.9
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.8e-30 136.0 107 58.9
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.3e-30 135.6 98 65.3
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 6.7e-30 134.0 110 59.1
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 8.8e-30 133.7 116 60.3
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 2.5e-29 132.1 118 55.1
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 5.7e-29 131.0 115 60.9
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 7.4e-29 130.6 115 60.9
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 9.7e-29 130.2 90 65.6
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.2e-28 129.0 90 65.6
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 2.8e-28 128.6 104 59.6
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 4.8e-28 127.9 80 76.2
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 1.1e-27 126.7 109 59.6
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 1.8e-27 125.9 99 64.6
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 2.4e-27 125.6 77 74.0
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 2.4e-27 125.6 103 61.2
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 2.4e-27 125.6 114 55.3
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 3.1e-27 125.2 115 60.0
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 5.3e-27 124.4 98 60.2
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 1.2e-26 123.2 89 67.4
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 1.2e-26 123.2 86 64.0
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 2.0e-26 122.5 112 57.1
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 3.4e-26 121.7 84 66.7
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 5.9e-26 120.9 75 76.0
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 7.7e-26 120.6 96 62.5
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 1.0e-25 120.2 108 57.4
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.3e-25 119.8 89 60.7
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 1.3e-25 119.8 86 67.4
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 2.9e-25 118.6 90 58.9
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 1.1e-24 116.7 86 62.8
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 1.4e-24 116.3 99 55.6
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.4e-24 116.3 85 62.4
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 1.4e-24 116.3 82 67.1
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 2.5e-24 115.5 87 59.8
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 3.2e-24 115.2 96 56.2
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 2.1e-23 112.5 82 61.0
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 2.7e-23 112.1 81 61.7
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 3.6e-23 111.7 81 67.9
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 7.9e-23 110.5 78 61.5
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 7.9e-23 110.5 85 60.0
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 1.0e-22 110.2 109 54.1
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 1.4e-22 109.8 75 66.7
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 1.8e-22 109.4 72 65.3
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 3.0e-22 108.6 92 56.5
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 6.7e-22 107.5 84 56.0
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 1.5e-21 106.3 86 55.8
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 1.5e-21 106.3 87 56.3
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 3.3e-21 105.1 74 62.2
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 4.4e-21 104.8 76 60.5
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 5.7e-21 104.4 87 55.2
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 5.7e-21 104.4 81 60.5
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 5.7e-21 104.4 86 54.7
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 7.4e-21 104.0 82 56.1
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 1.3e-20 103.2 85 55.3
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 2.2e-20 102.4 86 58.1
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 2.8e-20 102.1 87 52.9
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 3.7e-20 101.7 70 68.6
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 4.8e-20 101.3 79 59.5
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 4.8e-20 101.3 86 57.0
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 6.3e-20 100.9 82 50.0
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 6.3e-20 100.9 82 50.0
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 6.3e-20 100.9 81 54.3
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 6.3e-20 100.9 86 51.2
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 6.3e-20 100.9 83 57.8
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 8.2e-20 100.5 70 65.7
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 8.2e-20 100.5 85 50.6
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 1.1e-19 100.1 108 42.6
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.1e-19 100.1 75 58.7
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 1.8e-19 99.4 75 53.3
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 1.8e-19 99.4 83 55.4
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 1.8e-19 99.4 84 48.8
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 2.4e-19 99.0 84 53.6
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 4.1e-19 98.2 71 56.3
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 4.1e-19 98.2 81 49.4
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 5.3e-19 97.8 75 57.3
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 6.9e-19 97.4 82 47.6
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 6.9e-19 97.4 68 58.8
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 6.9e-19 97.4 84 59.5
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 6.9e-19 97.4 72 61.1
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 1.2e-18 96.7 89 47.2
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 1.2e-18 96.7 79 57.0
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 1.5e-18 96.3 80 50.0
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 1.5e-18 96.3 80 50.0
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 1.5e-18 96.3 80 50.0
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 1.5e-18 96.3 75 58.7
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 2.0e-18 95.9 81 48.1
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 2.0e-18 95.9 81 49.4
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 2.0e-18 95.9 69 58.0
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 2.6e-18 95.5 71 52.1
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 2.6e-18 95.5 89 46.1
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 2.6e-18 95.5 81 51.9
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 3.4e-18 95.1 81 48.1
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 4.5e-18 94.7 68 60.3
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 4.5e-18 94.7 86 50.0
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 2.2e-17 92.4 68 57.4
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 2.9e-17 92.0 77 49.4
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 2.9e-17 92.0 77 49.4
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 7.2e-16 87.4 71 56.3
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.2e-15 86.7 75 54.7
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 1.6e-15 86.3 79 49.4
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.0e-14 83.6 67 56.7
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 1.4e-14 83.2 74 52.7
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 7.4e-13 77.4 74 52.7
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 9.7e-13 77.0 75 49.3
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 3.7e-12 75.1 71 52.1
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.1e-11 73.6 95 50.5
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 4.1e-11 71.6 57 59.6
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 3.5e-10 68.6 43 74.4
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 1.3e-09 66.6 59 55.9
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 3.2e-08 62.0 47 55.3
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 7.2e-08 60.8 86 37.2
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 1.6e-07 59.7 65 49.2
SEGI_37086 Sequoiadendron giganteum HOM05D000262 ORTHO05D000300 2.7e-07 58.9 80 36.2
PGSC0003DMG400010902 Solanum tuberosum HOM05D006108 ORTHO05D007605 6.1e-07 57.8 39 66.7
Psat4g029920 Pisum sativum HOM05D000262 ORTHO05D009865 5.2e-06 54.7 81 35.8
Lj4g0012534 Lotus japonicus HOM05D009285 ORTHO05D009865 6.7e-06 54.3 86 32.6
Sopen11g007420 Solanum pennellii HOM05D000473 ORTHO05D001433 6.7e-06 54.3 65 38.5
Ciclev10007094m.g Citrus clementina HOM05D000262 ORTHO05D009865 8.8e-06 53.9 62 40.3
Thhalv10022291m.g Eutrema salsugineum HOM05D009269 ORTHO05D009865 8.8e-06 53.9 83 31.3
TPR.G14967 Trifolium pratense HOM05D009285 ORTHO05D009865 8.8e-06 53.9 85 32.9


User provided reference genes

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