Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 4.6e-164 581.3 310 100.0
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 3.9e-155 551.6 310 94.5
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 1.8e-152 542.7 310 93.5
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 1.1e-149 533.5 310 90.6
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 1.1e-149 533.5 310 91.0
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 1.2e-148 530.0 310 89.7
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 3.5e-148 528.5 310 90.0
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 8.9e-144 513.8 310 88.7
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 2.0e-143 512.7 310 88.7
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 4.9e-142 508.1 310 87.7
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 7.1e-141 504.2 310 85.8
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 9.6e-138 493.8 310 84.8
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 2.9e-134 482.3 310 82.6
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.1e-133 480.3 310 82.3
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 7.1e-133 477.6 312 81.7
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 6.0e-132 474.6 309 82.2
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 2.3e-131 472.6 310 80.3
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 2.3e-131 472.6 310 80.3
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 1.5e-130 469.9 310 80.6
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 1.9e-130 469.5 310 80.6
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 1.9e-130 469.5 310 80.0
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 1.9e-130 469.5 310 78.7
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 5.6e-130 468.0 310 81.3
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 1.3e-129 466.8 310 79.4
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 4.8e-129 464.9 310 80.6
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 6.2e-129 464.5 310 78.4
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 9.0e-128 460.7 310 77.4
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 1.5e-127 459.9 310 78.7
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 1.5e-127 459.9 310 79.0
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.5e-127 459.9 310 78.7
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 2.0e-127 459.5 310 77.7
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 9.9e-127 457.2 310 79.0
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 9.9e-127 457.2 310 78.4
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 3.8e-126 455.3 310 82.9
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 8.4e-126 454.1 310 77.7
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 8.4e-126 454.1 310 78.1
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.1e-125 453.8 310 78.4
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 1.4e-125 453.4 310 78.4
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 4.2e-125 451.8 318 76.7
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 5.4e-125 451.4 310 77.4
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 5.4e-125 451.4 317 76.0
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 5.4e-125 451.4 317 76.0
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 9.3e-125 450.7 311 77.8
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 3.5e-124 448.7 310 77.1
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 7.9e-124 447.6 318 75.8
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 1.3e-123 446.8 311 77.8
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.3e-123 446.0 318 74.8
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 3.9e-123 445.3 311 77.2
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 6.7e-123 444.5 310 76.1
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.5e-122 442.6 310 75.8
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 1.6e-121 439.9 318 74.8
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 2.8e-121 439.1 310 74.8
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.7e-121 438.7 309 75.1
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 6.2e-121 438.0 318 75.5
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 8.1e-121 437.6 310 75.2
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 1.8e-120 436.4 318 73.6
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.4e-120 436.0 318 73.6
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 3.1e-120 435.6 318 73.0
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 9.0e-120 434.1 310 73.5
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 9.0e-120 434.1 319 73.0
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 9.0e-120 434.1 318 73.6
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.2e-119 433.7 319 72.7
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 1.5e-119 433.3 310 73.5
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 2.6e-119 432.6 362 67.1
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 4.5e-119 431.8 310 74.2
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 4.5e-119 431.8 316 74.1
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 5.8e-119 431.4 318 72.6
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 7.6e-119 431.0 318 71.4
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.7e-118 429.9 319 71.8
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 2.2e-118 429.5 319 73.7
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 2.9e-118 429.1 318 71.4
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 4.9e-118 428.3 310 73.9
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 1.1e-117 427.2 318 71.7
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 2.4e-117 426.0 311 73.0
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 3.2e-117 425.6 318 70.8
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 9.3e-117 424.1 311 73.0
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 9.3e-117 424.1 345 67.5
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.0e-115 420.6 310 71.6
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 1.0e-115 420.6 312 71.8
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.8e-115 419.9 310 71.9
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 1.8e-115 419.9 318 72.0
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 3.9e-115 418.7 311 72.3
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 8.7e-115 417.5 318 70.4
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.1e-114 417.2 310 74.2
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.9e-114 416.4 312 72.1
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 4.3e-114 415.2 285 77.5
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 9.6e-114 414.1 310 71.0
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 3.1e-112 409.1 307 71.3
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 4.0e-112 408.7 310 69.4
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 6.9e-112 407.9 310 70.0
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.5e-111 406.8 278 79.5
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 1.5e-111 406.8 312 70.8
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 2.6e-111 406.0 315 68.6
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 2.6e-111 406.0 312 70.8
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 2.2e-110 402.9 315 68.6
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 3.8e-110 402.1 316 68.7
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 3.2e-109 399.1 294 72.8
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 3.2e-109 399.1 294 72.4
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 4.2e-109 398.7 297 72.1
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 1.6e-108 396.7 294 72.1
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 9.7e-106 387.5 321 66.7
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.7e-105 385.6 319 69.6
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 3.7e-105 385.6 279 72.8
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 4.1e-104 382.1 312 66.3
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 4.1e-104 382.1 286 71.7
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 2.6e-103 379.4 286 70.6
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 2.6e-103 379.4 262 76.7
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 3.4e-103 379.0 310 67.1
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 1.0e-102 377.5 281 72.2
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 6.5e-102 374.8 256 77.7
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 3.0e-99 365.9 262 74.4
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 4.8e-97 358.6 276 68.1
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 6.3e-97 358.2 740 37.6
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 9.1e-96 354.4 310 63.2
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 1.2e-95 354.0 310 65.2
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.5e-95 353.6 314 62.4
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 7.9e-92 341.3 256 71.1
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.8e-91 340.1 262 66.4
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 3.9e-91 339.0 313 63.3
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 7.2e-85 318.2 310 59.4
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.3e-83 313.2 228 73.7
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.7e-81 307.0 221 71.9
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 2.2e-81 306.6 242 67.8
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.1e-80 304.3 310 56.1
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 5.2e-75 285.4 314 51.6
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 3.5e-71 272.7 391 48.6
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 1.6e-68 263.8 320 47.2
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 1.3e-65 254.2 309 50.2
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 3.0e-59 233.0 179 74.9
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 2.2e-57 226.9 290 48.6
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 9.2e-56 221.5 186 68.8
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 5.8e-50 202.2 150 76.0
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 1.7e-49 200.7 121 93.4
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 2.2e-49 200.3 257 51.8
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 8.3e-49 198.4 157 72.6
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.1e-45 188.0 122 86.1
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 8.3e-41 171.8 141 68.8
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 2.1e-36 157.1 244 43.0
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 6.2e-36 155.6 257 44.4
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 3.4e-34 149.8 121 61.2
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 5.4e-32 142.5 313 34.8
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 4.7e-28 129.4 163 54.6
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 6.2e-28 129.0 128 62.5
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 2.4e-27 127.1 91 72.5
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.2e-26 124.8 110 60.9
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 1.1e-24 118.2 93 67.7
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 2.4e-24 117.1 100 62.0
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 6.0e-23 112.5 89 62.9
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.0e-22 111.7 109 61.5
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.0e-14 85.1 51 84.3
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.7e-14 84.3 84 58.3
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.0e-14 83.6 58 70.7
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 2.1e-12 77.4 395 24.6
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 3.5e-07 60.1 120 36.7


User provided reference genes

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