Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G180400 Glycine max HOM05D003094 ORTHO05D003482 1.8e-62 242.7 149 100.0
Phvul.004G153600 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 1.3e-44 183.3 149 68.5
Glyma.07G097400 Glycine max HOM05D003094 ORTHO05D003482 3.3e-43 178.7 110 87.3
VMungo0464G0085 Vigna mungo HOM05D013688 ORTHO05D013355 9.5e-43 177.2 150 73.3
Lj2g0001179 Lotus japonicus HOM05D003094 ORTHO05D003482 6.2e-26 121.3 123 57.7
Medtr6g082590 Medicago truncatula HOM05D003094 ORTHO05D003482 5.8e-24 114.8 129 56.6
Psat1g035120 Pisum sativum HOM05D003094 ORTHO05D003482 2.9e-23 112.5 125 54.4
Ca_25471_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 7.1e-22 107.8 113 58.4
Ca_29690_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 7.1e-22 107.8 113 58.4
arahy.Tifrunner.gnm1.ann1.J45ZPD Arachis hypogaea HOM05D003094 ORTHO05D003482 3.9e-20 102.1 132 55.3
arahy.Tifrunner.gnm1.ann1.53L2ET Arachis hypogaea HOM05D010130 ORTHO05D010480 1.9e-19 99.8 132 54.5
TPR.G25985 Trifolium pratense HOM05D003094 ORTHO05D003482 8.1e-18 94.4 95 57.9
Haze_18735 Corylus avellana HOM05D003094 ORTHO05D003482 1.9e-11 73.2 134 39.6
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 3.3e-11 72.4 68 60.3
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 4.3e-11 72.0 132 38.6
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 5.6e-11 71.6 124 41.9
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 5.6e-11 71.6 104 46.2
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 9.6e-11 70.9 122 39.3
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 1.6e-10 70.1 115 37.4
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 2.8e-10 69.3 115 41.7
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 2.8e-10 69.3 122 38.5
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 4.8e-10 68.6 137 38.7
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 4.8e-10 68.6 129 38.8
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.2e-10 68.2 53 60.4
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 8.1e-10 67.8 124 39.5
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.4e-09 67.0 53 58.5
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.4e-09 67.0 110 41.8
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 2.4e-09 66.2 137 38.0
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.1e-09 65.9 53 56.6
PGSC0003DMG401005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 3.1e-09 65.9 108 43.5
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 4.0e-09 65.5 122 41.8
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 5.3e-09 65.1 112 39.3
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 5.3e-09 65.1 89 46.1
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 6.9e-09 64.7 122 36.9
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 9.0e-09 64.3 101 46.5
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.2e-08 63.9 101 45.5
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.2e-08 63.9 101 45.5
Ah.11g047710 Amaranthus hybridus HOM05D003094 ORTHO05D003482 1.5e-08 63.5 104 38.5
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.5e-08 63.5 101 45.5
Lalb_Chr22g0353211 Lupinus albus HOM05D003094 ORTHO05D003482 1.5e-08 63.5 38 81.6
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 1.5e-08 63.5 98 39.8
Solyc03g119160.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 1.5e-08 63.5 102 43.1
Sopen03g038050 Solanum pennellii HOM05D003094 ORTHO05D003482 1.5e-08 63.5 83 48.2
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 1.5e-08 63.5 99 40.4
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 2.0e-08 63.2 50 58.0
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 2.6e-08 62.8 116 38.8
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.6e-08 62.8 108 38.0
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.4e-08 62.4 101 45.5
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 3.4e-08 62.4 123 39.0
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 5.8e-08 61.6 130 36.9
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 5.8e-08 61.6 89 43.8
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 7.6e-08 61.2 130 36.9
Cc04_g06850 Coffea canephora HOM05D003094 ORTHO05D003482 7.6e-08 61.2 132 33.3
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 9.9e-08 60.8 121 38.8
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 9.9e-08 60.8 89 46.1
Hund02353 Selenicereus undatus HOM05D003094 ORTHO05D003482 9.9e-08 60.8 95 38.9
CAN.G1129.14 Capsicum annuum HOM05D003094 ORTHO05D003482 1.3e-07 60.5 50 60.0
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 1.3e-07 60.5 127 37.0
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 1.3e-07 60.5 94 39.4
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 1.7e-07 60.1 115 34.8
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.7e-07 60.1 93 44.1
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 1.7e-07 60.1 96 39.6
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 2.2e-07 59.7 51 56.9
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 2.2e-07 59.7 117 37.6
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 2.9e-07 59.3 99 34.3
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 3.8e-07 58.9 125 37.6
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 3.8e-07 58.9 51 54.9
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 3.8e-07 58.9 123 39.0
PGR083G0382 Punica granatum HOM05D003094 ORTHO05D003482 3.8e-07 58.9 137 36.5
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 4.9e-07 58.5 84 41.7
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.9e-07 58.5 108 35.2
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 6.4e-07 58.2 128 36.7
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 6.4e-07 58.2 91 37.4
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 6.4e-07 58.2 127 39.4
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 6.4e-07 58.2 50 58.0
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 8.4e-07 57.8 51 58.8
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 8.4e-07 57.8 50 52.0
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 8.4e-07 57.8 54 50.0
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 8.4e-07 57.8 114 36.0
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 8.4e-07 57.8 99 40.4
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 1.1e-06 57.4 47 59.6
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 1.4e-06 57.0 126 36.5
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 1.4e-06 57.0 50 52.0
Gohir.D09G047900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.4e-06 57.0 107 43.9
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 1.4e-06 57.0 127 34.6
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 1.4e-06 57.0 97 40.2
ECA233G5083 Erigeron canadensis HOM05D003094 ORTHO05D003482 1.9e-06 56.6 96 36.5
Lsat_1_v5_gn_8_141460 Lactuca sativa HOM05D003094 ORTHO05D003482 1.9e-06 56.6 104 35.6
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 1.9e-06 56.6 81 40.7
EL10Ac5g11481 Beta vulgaris HOM05D003094 ORTHO05D003482 2.4e-06 56.2 122 33.6
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 2.4e-06 56.2 51 52.9
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 2.4e-06 56.2 55 50.9
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 2.4e-06 56.2 55 50.9
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 2.4e-06 56.2 51 52.9
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 2.4e-06 56.2 49 55.1
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 3.2e-06 55.8 90 41.1
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.2e-06 55.8 123 36.6
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 3.2e-06 55.8 118 33.9
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.2e-06 55.5 123 37.4
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 4.2e-06 55.5 99 33.3
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.2e-06 55.5 95 42.1
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 4.2e-06 55.5 51 52.9
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 5.5e-06 55.1 131 32.8
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 5.5e-06 55.1 59 47.5
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 5.5e-06 55.1 98 38.8
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 5.5e-06 55.1 96 37.5
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 7.1e-06 54.7 122 37.7
FAN04G1950 Fragaria x ananassa HOM05D003094 ORTHO05D003482 7.1e-06 54.7 103 36.9
HanXRQChr17g0558961 Helianthus annuus HOM05D003094 ORTHO05D003482 7.1e-06 54.7 112 37.5
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 7.1e-06 54.7 90 38.9
BcaC03g15460 Brassica carinata HOM05D003094 ORTHO05D003482 9.3e-06 54.3 104 37.5
BolC2t09174H Brassica oleracea HOM05D003094 ORTHO05D003482 9.3e-06 54.3 104 37.5
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 9.3e-06 54.3 128 36.7
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 9.3e-06 54.3 45 60.0
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 9.3e-06 54.3 123 35.0
Hma1.2p1_1283F.1_g272860 Hydrangea macrophylla HOM05D003094 ORTHO05D003482 9.3e-06 54.3 66 48.5


User provided reference genes

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