Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G177976 Glycine max HOM05D002288 ORTHO05D212724 2.0e-45 185.3 85 100.0
Phvul.002G327500 Phaseolus vulgaris HOM05D002288 ORTHO05D002894 4.3e-08 61.2 70 42.9
VMungo0251G1260 Vigna mungo HOM05D002288 ORTHO05D002894 4.3e-08 61.2 70 42.9
Medtr8g106790 Medicago truncatula HOM05D002288 ORTHO05D002894 7.4e-08 60.5 71 43.7
TPR.G12981 Trifolium pratense HOM05D002288 ORTHO05D002894 7.4e-08 60.5 73 41.1
QL10p027563 Quercus lobata HOM05D002288 ORTHO05D002894 9.7e-08 60.1 73 41.1
Lj4g0012771 Lotus japonicus HOM05D002288 ORTHO05D002894 1.3e-07 59.7 70 42.9
PGR044G2749 Punica granatum HOM05D002288 ORTHO05D002894 1.7e-07 59.3 71 45.1
Hund10302 Selenicereus undatus HOM05D002288 ORTHO05D002894 1.7e-07 59.3 72 41.7
THA.LOC104812161 Tarenaya hassleriana HOM05D002288 ORTHO05D002894 1.7e-07 59.3 72 40.3
arahy.Tifrunner.gnm1.ann1.4NZ6PL Arachis hypogaea HOM05D002288 ORTHO05D002894 2.2e-07 58.9 70 41.4
arahy.Tifrunner.gnm1.ann1.81A43L Arachis hypogaea HOM05D002288 ORTHO05D002894 2.2e-07 58.9 70 41.4
arahy.Tifrunner.gnm1.ann1.ERE2QZ Arachis hypogaea HOM05D002288 ORTHO05D002894 2.2e-07 58.9 70 41.4
arahy.Tifrunner.gnm1.ann1.UXG27B Arachis hypogaea HOM05D002288 ORTHO05D002894 2.2e-07 58.9 70 41.4
Eucgr.B00856 Eucalyptus grandis HOM05D002288 ORTHO05D002894 2.2e-07 58.9 73 39.7
Prupe.5G230000 Prunus persica HOM05D002288 ORTHO05D002894 2.2e-07 58.9 73 39.7
TWI60G0185 Tripterygium wilfordii HOM05D002288 ORTHO05D002894 2.2e-07 58.9 71 40.8
Atru.chr9.953 Acer truncatum HOM05D002288 ORTHO05D002894 2.8e-07 58.5 73 42.5
CiPaw.15G139200 Carya illinoinensis HOM05D002288 ORTHO05D002894 2.8e-07 58.5 72 41.7
CiPaw.16G090900 Carya illinoinensis HOM05D002288 ORTHO05D002894 2.8e-07 58.5 72 41.7
Sed0002179 Sechium edule HOM05D002288 ORTHO05D002894 2.8e-07 58.5 73 39.7
Sed0005672 Sechium edule HOM05D002288 ORTHO05D002894 2.8e-07 58.5 73 39.7
TWI81G0596 Tripterygium wilfordii HOM05D002288 ORTHO05D002894 2.8e-07 58.5 71 40.8
BcaC05g27559 Brassica carinata HOM05D002288 ORTHO05D002894 3.7e-07 58.2 69 37.7
C05p35420 Brassica napus HOM05D002288 ORTHO05D002894 3.7e-07 58.2 69 37.7
Cfa019697 Carpinus fangiana HOM05D002288 ORTHO05D002894 3.7e-07 58.2 69 44.9
Haze_18791 Corylus avellana HOM05D002288 ORTHO05D002894 3.7e-07 58.2 69 44.9
Glyma.05G243800 Glycine max HOM05D002288 ORTHO05D002894 3.7e-07 58.2 71 40.8
Glyma.08G051600 Glycine max HOM05D002288 ORTHO05D002894 3.7e-07 58.2 71 40.8
Lalb_Chr14g0370791 Lupinus albus HOM05D002288 ORTHO05D002894 3.7e-07 58.2 70 38.6
EL10Ac5g11523 Beta vulgaris HOM05D002288 ORTHO05D002894 4.8e-07 57.8 72 38.9
Ca_17219_v3 Cicer arietinum L. HOM05D002288 ORTHO05D002894 4.8e-07 57.8 69 42.0
FAN20G1569 Fragaria x ananassa HOM05D002288 ORTHO05D002894 4.8e-07 57.8 67 44.8
CANSAT80G1778 Cannabis sativa HOM05D002288 ORTHO05D002894 6.3e-07 57.4 73 39.7
CANSAT80G2028 Cannabis sativa HOM05D002288 ORTHO05D002894 6.3e-07 57.4 73 39.7
ClCG06G014460 Citrullus lanatus HOM05D002288 ORTHO05D002894 6.3e-07 57.4 73 39.7
Ciclev10008909m.g Citrus clementina HOM05D002288 ORTHO05D002894 6.3e-07 57.4 62 45.2
MELO3C017338.2 Cucumis melo HOM05D002288 ORTHO05D002894 6.3e-07 57.4 73 39.7
Duzib084G0288 Durio zibethinus HOM05D002288 ORTHO05D002894 6.3e-07 57.4 64 45.3
Lalb_Chr22g0353321 Lupinus albus HOM05D002288 ORTHO05D002894 6.3e-07 57.4 70 41.4
Eucgr.K02261 Eucalyptus grandis HOM05D002288 ORTHO05D002894 8.2e-07 57.0 72 41.7
RcHm_v2.0_Chr7g0178791 Rosa chinensis HOM05D002288 ORTHO05D002894 8.2e-07 57.0 67 44.8
Aa31LG4G4000 Aethionema arabicum HOM05D002288 ORTHO05D002894 1.1e-06 56.6 72 37.5
AL1G55290 Arabidopsis lyrata HOM05D002288 ORTHO05D002894 1.1e-06 56.6 62 43.5
AT3G18130 Arabidopsis thaliana HOM05D002288 ORTHO05D002894 1.1e-06 56.6 68 42.6
FvH4_5g17060 Fragaria vesca HOM05D002288 ORTHO05D002894 1.1e-06 56.6 67 44.8
FAN04G1522 Fragaria x ananassa HOM05D002288 ORTHO05D002894 1.1e-06 56.6 67 44.8
FAN13G3058 Fragaria x ananassa HOM05D002288 ORTHO05D002894 1.1e-06 56.6 67 44.8
FAN18G4183 Fragaria x ananassa HOM05D002288 ORTHO05D002894 1.1e-06 56.6 67 44.8
Lalb_Chr09g0330511 Lupinus albus HOM05D002288 ORTHO05D002894 1.1e-06 56.6 67 43.3
Sc12g0007370 Simmondsia chinensis HOM05D002288 ORTHO05D002894 1.1e-06 56.6 72 40.3
TWI15G0360 Tripterygium wilfordii HOM05D002288 ORTHO05D002894 1.1e-06 56.6 71 38.0
BraA08t34988Z Brassica rapa HOM05D002288 ORTHO05D002894 1.4e-06 56.2 72 36.1
Thhalv10008183m.g Eutrema salsugineum HOM05D002288 ORTHO05D002894 1.4e-06 56.2 72 37.5
FAN08G2209 Fragaria x ananassa HOM05D002288 ORTHO05D002894 1.4e-06 56.2 67 44.8
Psat7g003840 Pisum sativum HOM05D002288 ORTHO05D002894 1.4e-06 56.2 67 43.3
Aa31LG7G2990 Aethionema arabicum HOM05D002288 ORTHO05D002894 1.8e-06 55.8 72 37.5
A08p30560 Brassica napus HOM05D002288 ORTHO05D002894 1.8e-06 55.8 72 36.1
C08p18410 Brassica napus HOM05D002288 ORTHO05D002894 1.8e-06 55.8 72 36.1
BolC8t49471H Brassica oleracea HOM05D002288 ORTHO05D002894 1.8e-06 55.8 72 36.1
COL.COLO4_21589 Corchorus olitorius HOM05D002288 ORTHO05D002894 1.8e-06 55.8 72 40.3
CsaV3_1G004120 Cucumis sativus L. HOM05D002288 ORTHO05D002894 1.8e-06 55.8 71 40.8
Gohir.D09G171000 Gossypium hirsutum HOM05D002288 ORTHO05D002894 1.8e-06 55.8 64 43.8
Gorai.006G192600 Gossypium raimondii HOM05D002288 ORTHO05D002894 1.8e-06 55.8 64 43.8
MD00G1160700 Malus domestica HOM05D002288 ORTHO05D002894 1.8e-06 55.8 73 37.0
MD14G1233800 Malus domestica HOM05D002288 ORTHO05D002894 1.8e-06 55.8 73 37.0
AT1G48630 Arabidopsis thaliana HOM05D002288 ORTHO05D002894 2.4e-06 55.5 62 45.2
BcaC08g43071 Brassica carinata HOM05D002288 ORTHO05D002894 2.4e-06 55.5 67 41.8
C06p03270 Brassica napus HOM05D002288 ORTHO05D002894 2.4e-06 55.5 67 41.8
BolC6t35460H Brassica oleracea HOM05D002288 ORTHO05D002894 2.4e-06 55.5 67 41.8
AUR62033738 Chenopodium quinoa HOM05D002288 ORTHO05D002894 2.4e-06 55.5 73 39.7
Duzib205G1910 Durio zibethinus HOM05D002288 ORTHO05D002894 2.4e-06 55.5 67 43.3
Gohir.A09G174000 Gossypium hirsutum HOM05D002288 ORTHO05D002894 2.4e-06 55.5 64 42.2
Psat6g148200 Pisum sativum HOM05D002288 ORTHO05D002894 2.4e-06 55.5 67 41.8
THA.LOC104813915 Tarenaya hassleriana HOM05D002288 ORTHO05D002894 2.4e-06 55.5 72 38.9
Ah.12g062430 Amaranthus hybridus HOM05D002288 ORTHO05D002894 3.1e-06 55.1 72 37.5
A05p20960 Brassica napus HOM05D002288 ORTHO05D002894 3.1e-06 55.1 72 37.5
BraA05t21001Z Brassica rapa HOM05D002288 ORTHO05D002894 3.1e-06 55.1 72 37.5
CAN.G423.20 Capsicum annuum HOM05D002288 ORTHO05D002894 3.1e-06 55.1 63 41.3
AUR62029956 Chenopodium quinoa HOM05D002288 ORTHO05D002894 3.1e-06 55.1 73 38.4
ECA238G2805 Erigeron canadensis HOM05D002288 ORTHO05D002894 3.1e-06 55.1 65 44.6
Sp1g16100 Schrenkiella parvula HOM05D002288 ORTHO05D002894 3.1e-06 55.1 72 36.1
Solyc06g069010.3 Solanum lycopersicum HOM05D002288 ORTHO05D002894 3.1e-06 55.1 66 43.9
Sopen06g026300 Solanum pennellii HOM05D002288 ORTHO05D002894 3.1e-06 55.1 66 43.9
BcaB07g31831 Brassica carinata HOM05D002288 ORTHO05D002894 4.1e-06 54.7 72 34.7
BcaC05g25702 Brassica carinata HOM05D002288 ORTHO05D002894 4.1e-06 54.7 72 34.7
BcaC07g38907 Brassica carinata HOM05D002288 ORTHO05D002894 4.1e-06 54.7 72 36.1
BcaC07g41345 Brassica carinata HOM05D002288 ORTHO05D002894 4.1e-06 54.7 72 34.7
A06p04290 Brassica napus HOM05D002288 ORTHO05D002894 4.1e-06 54.7 67 41.8
A06p14150 Brassica napus HOM05D002288 ORTHO05D002894 4.1e-06 54.7 72 34.7
C05p16410 Brassica napus HOM05D002288 ORTHO05D002894 4.1e-06 54.7 72 34.7
BolC5t30338H Brassica oleracea HOM05D002288 ORTHO05D002894 4.1e-06 54.7 72 34.7
BraA06t23633Z Brassica rapa HOM05D002288 ORTHO05D002894 4.1e-06 54.7 67 41.8
BraA06t24547Z Brassica rapa HOM05D002288 ORTHO05D002894 4.1e-06 54.7 72 34.7
CARHR093430 Cardamine hirsuta HOM05D002288 ORTHO05D002894 4.1e-06 54.7 72 37.5
Thhalv10011646m.g Eutrema salsugineum HOM05D002288 ORTHO05D002894 4.1e-06 54.7 72 37.5
Gohir.A12G268200 Gossypium hirsutum HOM05D002288 ORTHO05D002894 4.1e-06 54.7 64 43.8
Gohir.D12G268600 Gossypium hirsutum HOM05D002288 ORTHO05D002894 4.1e-06 54.7 64 43.8
Gorai.008G288800 Gossypium raimondii HOM05D002288 ORTHO05D002894 4.1e-06 54.7 64 43.8
Lalb_Chr24g0398021 Lupinus albus HOM05D002288 ORTHO05D002894 4.1e-06 54.7 70 37.1
Solyc12g040510.2 Solanum lycopersicum HOM05D002288 ORTHO05D002894 4.1e-06 54.7 62 41.9
Sopen12g020110 Solanum pennellii HOM05D002288 ORTHO05D002894 4.1e-06 54.7 62 41.9
PGSC0003DMG400015829 Solanum tuberosum HOM05D002288 ORTHO05D002894 4.1e-06 54.7 62 41.9
PGSC0003DMG400028795 Solanum tuberosum HOM05D002288 ORTHO05D002894 4.1e-06 54.7 66 42.4
Thecc.03G048300 Theobroma cacao HOM05D002288 ORTHO05D002894 4.1e-06 54.7 67 43.3
Aa31LG8G4970 Aethionema arabicum HOM05D002288 ORTHO05D002894 5.3e-06 54.3 62 40.3
Aqoxy3G00143 Aquilegia oxysepala HOM05D002288 ORTHO05D002894 5.3e-06 54.3 54 42.6
BcaB07g33726 Brassica carinata HOM05D002288 ORTHO05D002894 5.3e-06 54.3 56 44.6
C08p43540 Brassica napus HOM05D002288 ORTHO05D002894 5.3e-06 54.3 72 34.7
BolC8t51900H Brassica oleracea HOM05D002288 ORTHO05D002894 5.3e-06 54.3 72 34.7
Carub.0001s3777 Capsella rubella HOM05D002288 ORTHO05D002894 5.3e-06 54.3 54 46.3
Cpa.g.sc3.429 Carica papaya HOM05D002288 ORTHO05D002894 5.3e-06 54.3 72 38.9
Sp1g35600 Schrenkiella parvula HOM05D002288 ORTHO05D002894 5.3e-06 54.3 67 40.3
A09p60100 Brassica napus HOM05D002288 ORTHO05D002894 6.9e-06 53.9 72 34.7
BraA09t41379Z Brassica rapa HOM05D002288 ORTHO05D002894 6.9e-06 53.9 72 34.7
Carub.0003s1785 Capsella rubella HOM05D002288 ORTHO05D002894 6.9e-06 53.9 72 37.5
CARHR038260 Cardamine hirsuta HOM05D002288 ORTHO05D002894 6.9e-06 53.9 54 46.3
Nitab4.5_0000150g0090 Nicotiana tabacum HOM05D002288 ORTHO05D002894 6.9e-06 53.9 62 41.9
Nitab4.5_0004037g0010 Nicotiana tabacum HOM05D002288 ORTHO05D002894 6.9e-06 53.9 62 41.9
AL1G30460 Arabidopsis lyrata HOM05D002288 ORTHO05D002894 9.1e-06 53.5 72 36.1
CAN.G1129.30 Capsicum annuum HOM05D002288 ORTHO05D002894 9.1e-06 53.5 63 41.3
Lsat_1_v5_gn_8_3580 Lactuca sativa HOM05D002288 ORTHO05D002894 9.1e-06 53.5 64 43.8
Nitab4.5_0005182g0010 Nicotiana tabacum HOM05D002288 ORTHO05D002894 9.1e-06 53.5 62 41.9


User provided reference genes

Program Settings