Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G175050 Glycine max HOM05D004254 ORTHO05D005184 2.1e-83 312.4 164 100.0
Glyma.07G103000 Glycine max HOM05D004254 ORTHO05D005184 4.1e-63 245.0 163 82.2
arahy.Tifrunner.gnm1.ann1.FFN37F Arachis hypogaea HOM05D004254 ORTHO05D005184 5.9e-62 241.1 147 83.7
Phvul.004G150100 Phaseolus vulgaris HOM05D004254 ORTHO05D005184 5.9e-62 241.1 163 79.8
arahy.Tifrunner.gnm1.ann1.QLLT1A Arachis hypogaea HOM05D004254 ORTHO05D005184 2.2e-61 239.2 147 83.0
VMungo0464G0766 Vigna mungo HOM05D004254 ORTHO05D005184 2.9e-61 238.8 163 79.8
Lj2g0021015 Lotus japonicus HOM05D004254 ORTHO05D005184 1.4e-58 229.9 163 76.7
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 6.8e-58 227.6 147 79.6
Lalb_Chr14g0370611 Lupinus albus HOM05D004254 ORTHO05D005184 6.8e-58 227.6 163 75.5
TPR.G8645 Trifolium pratense HOM05D004254 ORTHO05D005184 8.8e-58 227.3 163 74.8
Psat1g030920 Pisum sativum HOM05D004254 ORTHO05D005184 2.0e-57 226.1 163 74.2
Ca_25341_v3 Cicer arietinum L. HOM05D004254 ORTHO05D005184 5.7e-57 224.6 170 71.8
Ca_25342_v3 Cicer arietinum L. HOM05D004254 ORTHO05D005184 5.7e-57 224.6 170 71.8
Medtr6g069660 Medicago truncatula HOM05D004254 ORTHO05D005184 2.8e-56 222.2 163 73.0
Sopen03g037600 Solanum pennellii HOM05D004254 ORTHO05D005184 7.2e-52 207.6 163 68.7
Solyc03g118640.3 Solanum lycopersicum HOM05D004254 ORTHO05D005184 9.5e-52 207.2 163 68.7
Haze_18876 Corylus avellana HOM05D004254 ORTHO05D005184 1.0e-50 203.8 163 68.1
Peaxi162Scf00314g00334 Petunia axillaris HOM05D004254 ORTHO05D005184 1.0e-50 203.8 163 67.5
MD14G1237000 Malus domestica HOM05D004254 ORTHO05D005184 1.4e-50 203.4 163 67.5
Prupe.5G234300 Prunus persica HOM05D004254 ORTHO05D005184 1.4e-50 203.4 163 67.5
Nitab4.5_0001264g0010 Nicotiana tabacum HOM05D004254 ORTHO05D005184 1.8e-50 203.0 163 67.5
QL10p030432 Quercus lobata HOM05D004254 ORTHO05D005184 3.0e-50 202.2 165 66.7
CAN.G843.50 Capsicum annuum HOM05D004254 ORTHO05D005184 5.2e-50 201.4 163 66.3
CiPaw.15G144100 Carya illinoinensis HOM05D004254 ORTHO05D005184 5.2e-50 201.4 163 66.9
TAR629G2841 Trochodendron aralioides HOM05D004254 ORTHO05D005184 6.8e-50 201.1 163 65.6
CSS0013925 Camellia sinensis var. sinensis HOM05D004254 ORTHO05D005184 1.5e-49 199.9 163 66.9
Nitab4.5_0010223g0010 Nicotiana tabacum HOM05D004254 ORTHO05D005184 2.0e-49 199.5 163 66.3
GSVIVG01008461001 Vitis vinifera HOM05D004254 ORTHO05D005184 2.0e-49 199.5 163 66.3
Nn009s41423 Nelumbo nucifera HOM05D004254 ORTHO05D005184 2.6e-49 199.1 163 66.3
Atru.chr9.1674 Acer truncatum HOM05D004254 ORTHO05D005184 5.7e-49 198.0 163 64.4
MELO3C017366.2 Cucumis melo HOM05D004254 ORTHO05D005184 9.8e-49 197.2 163 64.4
CANSAT21G0981 Cannabis sativa HOM05D004254 ORTHO05D005184 1.3e-48 196.8 163 64.4
Actinidia12362 Actinidia chinensis HOM05D004254 ORTHO05D005184 1.7e-48 196.4 163 65.0
PGR083G1460 Punica granatum HOM05D004254 ORTHO05D005184 1.7e-48 196.4 163 64.4
CsaV3_1G004440 Cucumis sativus L. HOM05D004254 ORTHO05D005184 2.2e-48 196.1 163 64.4
Hma1.2p1_0163F.1_g073040 Hydrangea macrophylla HOM05D004254 ORTHO05D005184 3.7e-48 195.3 164 64.6
Hma1.2p1_0163F.1_g073050 Hydrangea macrophylla HOM05D004254 ORTHO05D005184 3.7e-48 195.3 164 64.6
Gorai.005G132300 Gossypium raimondii HOM05D004254 ORTHO05D005184 6.3e-48 194.5 163 64.4
Manes.06G005200 Manihot esculenta HOM05D004254 ORTHO05D005184 6.3e-48 194.5 163 64.4
DCAR_012097 Daucus carota HOM05D004254 ORTHO05D005184 1.1e-47 193.7 163 64.4
Potri.015G037000 Populus trichocarpa HOM05D004254 ORTHO05D005184 1.1e-47 193.7 163 64.4
Rhsim08G0126700 Rhododendron simsii HOM05D004254 ORTHO05D005184 1.4e-47 193.4 163 62.6
Gohir.D02G121800 Gossypium hirsutum HOM05D004254 ORTHO05D005184 2.4e-47 192.6 163 63.8
Sc10g0009220 Simmondsia chinensis HOM05D004254 ORTHO05D005184 3.1e-47 192.2 163 62.0
Cc04_g06160 Coffea canephora HOM05D004254 ORTHO05D005184 4.1e-47 191.8 163 62.6
HanXRQChr17g0559181 Helianthus annuus HOM05D004254 ORTHO05D005184 9.2e-47 190.7 161 64.6
Lsat_1_v5_gn_8_141761 Lactuca sativa HOM05D004254 ORTHO05D005184 9.2e-47 190.7 163 63.2
PSO017G0085 Papaver somniferum HOM05D004254 ORTHO05D005184 9.2e-47 190.7 163 63.2
Sabra15G0032200 Salix brachista HOM05D004254 ORTHO05D005184 9.2e-47 190.7 163 62.6
ECA233G1972 Erigeron canadensis HOM05D004254 ORTHO05D005184 1.6e-46 189.9 163 62.6
Thecc.03G057600 Theobroma cacao HOM05D004254 ORTHO05D005184 1.6e-46 189.9 163 63.2
COL.COLO4_06962 Corchorus olitorius HOM05D004254 ORTHO05D005184 2.0e-46 189.5 163 63.2
RcHm_v2.0_Chr7g0178241 Rosa chinensis HOM05D004254 ORTHO05D005184 2.0e-46 189.5 163 63.2
Eucgr.B00991 Eucalyptus grandis HOM05D004254 ORTHO05D005184 2.7e-46 189.1 163 61.3
Gohir.A03G092900 Gossypium hirsutum HOM05D004254 ORTHO05D005184 2.7e-46 189.1 163 62.6
Duzib084G0705 Durio zibethinus HOM05D004254 ORTHO05D005184 4.5e-46 188.3 163 63.2
PSO478G1825 Papaver somniferum HOM05D004254 ORTHO05D005184 4.5e-46 188.3 163 62.6
TWI81G0051 Tripterygium wilfordii HOM05D004254 ORTHO05D005184 4.5e-46 188.3 163 61.3
Sabra15G0031800 Salix brachista HOM05D004254 ORTHO05D005184 5.9e-46 188.0 154 65.6
Sabra15G0059400 Salix brachista HOM05D004254 ORTHO05D005184 5.9e-46 188.0 154 65.6
vmacro17774 Vaccinium macrocarpon HOM05D004254 ORTHO05D005184 5.9e-46 188.0 163 60.7
SGA_v2.0_scaffold28G11766 Striga asiatica HOM05D004254 ORTHO05D005184 7.8e-46 187.6 163 60.7
ClCG06G014240 Citrullus lanatus HOM05D004254 ORTHO05D005184 1.3e-45 186.8 163 62.0
FvH4_5g17450 Fragaria vesca HOM05D004254 ORTHO05D005184 2.3e-45 186.0 163 62.0
Migut.I00270 Erythranthe guttata HOM05D004254 ORTHO05D005184 2.9e-45 185.7 163 61.3
FAN04G2545 Fragaria x ananassa HOM05D004254 ORTHO05D005184 2.9e-45 185.7 163 62.6
Lj5A159T43 Lonicera japonica HOM05D004254 ORTHO05D005184 2.9e-45 185.7 162 63.0
SalBow7G0492 Salvia bowleyana HOM05D004254 ORTHO05D005184 2.9e-45 185.7 163 60.7
MBI12_g17290_MAGBIO Magnolia biondii HOM05D004254 ORTHO05D005184 3.8e-45 185.3 153 64.1
MSTRG.11304 Avicennia marina HOM05D004254 ORTHO05D005184 6.6e-45 184.5 163 60.7
Sed0023132 Sechium edule HOM05D004254 ORTHO05D005184 6.6e-45 184.5 163 60.7
Aqoxy3G00045 Aquilegia oxysepala HOM05D004254 ORTHO05D005184 1.1e-44 183.7 163 63.2
Sabra15G0062100 Salix brachista HOM05D004254 ORTHO05D005184 1.5e-44 183.3 154 63.6
Sabra15G0030600 Salix brachista HOM05D004254 ORTHO05D005184 3.3e-44 182.2 151 64.9
Cpa.g.sc3.389 Carica papaya HOM05D004254 ORTHO05D005184 9.5e-44 180.6 156 59.6
AUR62035874 Chenopodium quinoa HOM05D004254 ORTHO05D005184 4.7e-43 178.3 163 58.9
Zm00001eb280650 Zea mays HOM05D004254 ORTHO05D005184 1.8e-42 176.4 163 57.7
FAN13G1575 Fragaria x ananassa HOM05D004254 ORTHO05D005184 3.0e-42 175.6 154 61.7
SEGI_15506 Sequoiadendron giganteum HOM05D004254 ORTHO05D005184 4.0e-42 175.3 163 58.9
ATR1102G008 Amborella trichopoda HOM05D004254 ORTHO05D005184 6.8e-42 174.5 163 59.5
Carub.0001s1789 Capsella rubella HOM05D004254 ORTHO05D005184 6.8e-42 174.5 163 57.7
FAN18G0674 Fragaria x ananassa HOM05D004254 ORTHO05D005184 6.8e-42 174.5 154 61.0
unitig_749.g14137 Utricularia gibba HOM05D004254 ORTHO05D005184 6.8e-42 174.5 163 56.4
AL1G30650 Arabidopsis lyrata HOM05D004254 ORTHO05D005184 1.5e-41 173.3 163 57.1
CDE05G2038 Ceratophyllum demersum HOM05D004254 ORTHO05D005184 4.4e-41 171.8 163 58.9
AT1G18270 Arabidopsis thaliana HOM05D004254 ORTHO05D005184 5.8e-41 171.4 163 56.4
Sabra15G0058300 Salix brachista HOM05D004254 ORTHO05D005184 9.8e-41 170.6 159 59.1
Aa31LG7G2820 Aethionema arabicum HOM05D004254 ORTHO05D005184 1.7e-40 169.9 163 57.1
Os06g0258900 Oryza sativa ssp. japonica HOM05D004254 ORTHO05D005184 2.2e-40 169.5 163 55.8
CARHR018830 Cardamine hirsuta HOM05D004254 ORTHO05D005184 6.4e-40 167.9 163 55.8
Thhalv10006567m.g Eutrema salsugineum HOM05D004254 ORTHO05D005184 6.4e-40 167.9 163 56.4
A06p14290 Brassica napus HOM05D004254 ORTHO05D005184 1.1e-39 167.2 163 57.1
BcaB07g31814 Brassica carinata HOM05D004254 ORTHO05D005184 1.4e-39 166.8 163 56.4
BolC5t30352H Brassica oleracea HOM05D004254 ORTHO05D005184 1.4e-39 166.8 163 56.4
C05p16550 Brassica napus HOM05D004254 ORTHO05D005184 4.1e-39 165.2 163 56.4
BraA06t24558Z Brassica rapa HOM05D004254 ORTHO05D005184 4.1e-39 165.2 163 56.4
BcaC05g25721 Brassica carinata HOM05D004254 ORTHO05D005184 1.2e-38 163.7 163 55.8
Sp1g16240 Schrenkiella parvula HOM05D004254 ORTHO05D005184 3.5e-38 162.2 163 55.2
SMO117G0106 Selaginella moellendorffii HOM05D004254 ORTHO05D005184 1.9e-36 156.4 167 55.1
HPP92_023491 Vanilla planifolia HOM05D004254 ORTHO05D005184 5.6e-36 154.8 160 54.4
Pp3c23_11630 Physcomitrium patens HOM05D004254 ORTHO05D005184 1.3e-32 143.7 165 52.7
Sabra15G0033600 Salix brachista HOM05D004254 ORTHO05D005184 3.7e-32 142.1 122 63.1
Mapoly0094s0055 Marchantia polymorpha HOM05D004254 ORTHO05D005184 1.5e-28 130.2 159 49.1
arahy.Tifrunner.gnm1.ann1.W5GTH2 Arachis hypogaea HOM05D004254 ORTHO05D005184 6.6e-21 104.8 67 77.6
Ah.13g074660 Amaranthus hybridus HOM05D004254 ORTHO05D005184 3.6e-19 99.0 72 68.1
Ciclev10008504m.g Citrus clementina HOM05D004254 ORTHO05D005184 6.8e-18 94.7 68 69.1
Hma1.2p1_1360F.1_g278110 Hydrangea macrophylla HOM05D004254 ORTHO05D005184 8.4e-08 61.2 49 61.2


User provided reference genes

Program Settings