Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 2.4e-147 525.4 252 100.0
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 3.3e-136 488.4 251 93.2
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 7.3e-128 460.7 254 87.8
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 6.0e-122 441.0 253 85.4
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 1.7e-121 439.5 253 83.8
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 3.0e-121 438.7 244 86.1
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 3.6e-119 431.8 253 82.6
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 5.2e-118 427.9 254 81.5
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 6.8e-118 427.6 253 81.8
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 2.2e-116 422.5 253 81.8
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 8.4e-116 420.6 253 81.8
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 5.1e-113 411.4 253 79.1
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 1.2e-106 390.2 230 80.0
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 2.5e-104 382.5 253 70.0
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 9.6e-104 380.6 254 71.3
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 1.6e-103 379.8 253 69.2
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 1.5e-101 373.2 254 68.9
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 9.9e-101 370.5 254 70.5
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 1.3e-100 370.2 254 72.0
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 1.3e-100 370.2 254 70.9
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 2.2e-100 369.4 252 70.6
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 2.2e-100 369.4 255 69.4
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 6.4e-100 367.9 253 69.2
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 1.1e-99 367.1 255 67.8
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 2.4e-99 365.9 257 68.5
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 9.3e-99 364.0 254 68.1
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 1.6e-98 363.2 253 69.6
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 1.6e-98 363.2 244 71.3
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 2.1e-98 362.8 255 66.7
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 2.1e-98 362.8 249 69.9
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 4.6e-98 361.7 253 67.6
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 3.9e-97 358.6 257 66.5
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 3.9e-97 358.6 249 69.1
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 5.1e-97 358.2 256 68.8
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 6.7e-97 357.8 256 67.2
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 1.1e-96 357.1 253 66.8
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 3.3e-96 355.5 253 66.0
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 5.6e-96 354.8 249 68.7
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 7.4e-96 354.4 254 67.7
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 1.6e-95 353.2 252 65.5
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 2.8e-95 352.4 250 68.0
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 6.2e-95 351.3 258 66.7
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 6.2e-95 351.3 248 66.5
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 8.1e-95 350.9 252 64.3
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 1.1e-94 350.5 230 69.1
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 1.4e-94 350.1 253 66.4
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 1.8e-94 349.7 255 66.3
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 2.4e-94 349.4 232 68.1
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 2.4e-94 349.4 254 66.1
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 3.1e-94 349.0 255 66.3
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 4.0e-94 348.6 259 65.3
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 6.9e-94 347.8 254 65.7
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 2.0e-93 346.3 247 67.6
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 3.4e-93 345.5 254 66.5
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 3.4e-93 345.5 253 64.8
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 1.7e-92 343.2 256 63.3
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 1.7e-92 343.2 254 63.8
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 2.2e-92 342.8 254 63.0
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 3.8e-92 342.0 254 64.2
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 4.9e-92 341.7 248 64.9
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 6.4e-92 341.3 253 62.8
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 6.4e-92 341.3 253 62.8
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 1.4e-91 340.1 249 67.9
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 2.5e-91 339.3 254 63.4
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 3.2e-91 339.0 251 62.5
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 3.2e-91 339.0 251 62.5
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 3.2e-91 339.0 236 68.2
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 5.5e-91 338.2 256 62.5
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 5.5e-91 338.2 253 64.4
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 1.6e-90 336.7 255 63.9
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 7.9e-90 334.3 253 61.7
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 1.0e-89 334.0 248 62.9
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 1.3e-89 333.6 254 61.8
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 1.3e-89 333.6 248 62.9
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 1.8e-89 333.2 255 62.0
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 1.8e-89 333.2 255 62.0
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 3.0e-89 332.4 248 62.1
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 3.9e-89 332.0 231 70.1
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 2.5e-88 329.3 254 63.8
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 3.3e-88 328.9 260 62.7
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 5.6e-88 328.2 230 67.4
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 9.6e-88 327.4 254 60.6
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 1.6e-87 326.6 253 63.2
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 4.8e-87 325.1 254 61.4
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 8.2e-87 324.3 255 61.6
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 8.2e-87 324.3 255 61.6
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 8.2e-87 324.3 255 61.6
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 1.8e-86 323.2 221 71.5
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 2.4e-86 322.8 233 65.7
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 2.4e-86 322.8 233 67.0
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 2.4e-86 322.8 275 57.5
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 9.0e-86 320.9 254 59.4
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 9.0e-86 320.9 231 67.5
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 4.5e-85 318.5 253 62.1
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 1.7e-84 316.6 251 60.6
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 4.9e-84 315.1 255 61.2
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 6.5e-84 314.7 256 60.5
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 2.5e-83 312.8 282 56.4
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 7.1e-83 311.2 231 63.2
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 1.8e-81 306.6 233 63.1
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 1.5e-80 303.5 221 65.2
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 3.3e-80 302.4 400 43.8
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 7.4e-80 301.2 256 57.0
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 2.4e-78 296.2 248 58.9
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 7.7e-77 291.2 268 56.3
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 1.2e-74 283.9 197 68.5
Eucgr.B00986 Eucalyptus grandis HOM05D005585 ORTHO05D006905 2.7e-74 282.7 198 68.7
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 4.3e-72 275.4 251 55.4
Gohir.D09G170128 Gossypium hirsutum HOM05D005585 ORTHO05D006905 1.3e-60 237.3 177 62.7
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 4.4e-56 222.2 242 45.9
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 1.7e-55 220.3 262 43.5
Cpa.g.sc3.377 Carica papaya HOM05D005585 ORTHO05D006905 4.8e-55 218.8 153 69.9
CARHR038140 Cardamine hirsuta HOM05D005585 ORTHO05D006905 6.3e-55 218.4 242 45.5
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 1.1e-54 217.6 255 41.6
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 3.5e-53 212.6 237 43.9
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 7.2e-51 204.9 237 43.9
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 2.3e-49 199.9 254 43.7
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 3.4e-48 196.1 268 38.8
SEGI_34948 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 2.8e-47 193.0 150 59.3
Carub.0001s3764 Capsella rubella HOM05D005585 ORTHO05D006905 2.7e-45 186.4 237 42.2
BcaB04g20806 Brassica carinata HOM05D005585 ORTHO05D006905 5.0e-44 182.2 176 52.3
Carub.0001s3763 Capsella rubella HOM05D005585 ORTHO05D006905 6.5e-44 181.8 227 42.3
TAR628G1286 Trochodendron aralioides HOM05D005585 ORTHO05D006905 5.5e-43 178.7 129 63.6
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 8.0e-42 174.9 132 63.6
BcaB08g34867 Brassica carinata HOM05D005585 ORTHO05D006905 2.0e-40 170.2 234 39.3
Zm00001eb338430 Zea mays HOM05D005585 ORTHO05D006905 2.0e-37 160.2 88 80.7
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 2.9e-36 156.4 288 31.9
Zm00001eb099110 Zea mays HOM05D005585 ORTHO05D006905 6.8e-33 145.2 156 48.7
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 5.9e-29 132.1 269 31.2
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 3.9e-20 102.8 68 67.6
Cre16.g664700 Chlamydomonas reinhardtii HOM05D005585 ORTHO05D006905 1.5e-19 100.9 289 28.7
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 5.2e-17 92.4 77 55.8
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 2.6e-16 90.1 63 66.7
MCO16G342 Micromonas commoda HOM05D005585 ORTHO05D006905 6.8e-09 65.5 166 25.3
CBR_g629 Chara braunii HOM05D005585 ORTHO05D006905 8.9e-09 65.1 126 29.4
CDE07G0810 Ceratophyllum demersum HOM05D005585 ORTHO05D006905 4.9e-07 59.3 69 46.4


User provided reference genes

Program Settings