Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1271.9 631 100.0
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1187.2 633 94.2
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1086.6 633 86.7
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 1.9e-305 1052.0 633 85.2
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 7.5e-299 1030.0 633 80.3
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 7.5e-299 1030.0 633 80.6
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 1.6e-296 1022.3 633 79.6
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 8.9e-292 1006.5 633 78.2
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 4.4e-291 1004.2 634 79.0
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 6.4e-290 1000.3 633 78.5
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 1.6e-277 959.1 633 77.1
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 1.6e-256 889.4 649 72.9
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 9.4e-241 837.0 635 66.1
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 1.0e-239 833.6 629 66.6
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 2.0e-235 819.3 635 64.1
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 1.3e-234 816.6 635 64.7
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 8.5e-234 813.9 634 64.2
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 1.1e-233 813.5 636 63.8
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 1.1e-233 813.5 643 63.9
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 1.6e-232 809.7 634 63.6
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 9.7e-230 800.4 633 62.7
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 9.7e-230 800.4 634 63.9
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 2.2e-229 799.3 636 64.2
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 2.2e-229 799.3 635 63.8
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 1.4e-228 796.6 635 63.1
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 1.4e-228 796.6 635 63.1
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 1.4e-228 796.6 634 63.1
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 4.1e-228 795.0 636 63.4
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 5.3e-228 794.7 635 63.0
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 1.3e-226 790.0 634 63.4
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 8.5e-226 787.3 635 63.0
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 2.5e-225 785.8 634 61.4
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 2.7e-224 782.3 634 62.0
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 8.0e-224 780.8 633 61.8
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 4.0e-223 778.5 630 63.0
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 5.2e-223 778.1 625 62.4
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 6.7e-223 777.7 633 61.9
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 1.3e-221 773.5 640 61.4
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 2.4e-220 769.2 700 56.7
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 3.1e-220 768.8 634 59.3
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 5.9e-219 764.6 634 59.0
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 7.7e-219 764.2 634 59.1
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 4.7e-216 755.0 639 61.3
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 3.7e-213 745.3 637 58.9
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 8.3e-213 744.2 637 59.2
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 1.5e-209 733.4 637 58.6
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 9.5e-209 730.7 638 58.9
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 4.7e-208 728.4 634 58.2
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 4.0e-207 725.3 633 57.8
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 6.8e-207 724.5 633 57.2
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 1.7e-205 719.9 635 57.2
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 1.4e-204 716.8 629 57.4
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 1.8e-204 716.5 638 57.4
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 1.2e-203 713.8 637 57.9
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 1.0e-202 710.7 637 58.6
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 1.3e-202 710.3 638 57.2
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 2.3e-202 709.5 636 56.4
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 5.6e-201 704.9 633 56.7
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 2.8e-200 702.6 633 57.5
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 1.8e-199 699.9 640 56.6
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 4.0e-199 698.7 590 60.7
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 1.2e-198 697.2 641 56.3
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 2.0e-198 696.4 638 56.0
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 2.0e-198 696.4 638 56.0
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 2.6e-198 696.0 638 56.4
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 4.4e-198 695.3 638 56.7
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 9.2e-196 687.6 638 56.0
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 2.7e-195 686.0 623 55.5
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 2.7e-195 686.0 588 59.2
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 6.0e-195 684.9 601 57.1
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 5.6e-193 678.3 635 55.1
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 1.2e-192 677.2 637 55.6
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 6.2e-192 674.9 621 55.9
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 4.9e-189 665.2 637 54.9
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 2.4e-188 662.9 624 54.2
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 7.0e-188 661.4 614 56.4
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 2.3e-186 656.4 1109 38.0
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 3.3e-185 652.5 631 53.6
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 2.8e-184 649.4 822 47.4
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 2.3e-183 646.4 634 53.2
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 1.3e-181 640.6 634 53.8
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 1.7e-181 640.2 557 60.0
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 2.4e-180 636.3 615 53.7
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 2.1e-176 623.2 601 53.4
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 1.2e-174 617.5 630 51.4
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 2.3e-170 603.2 634 51.1
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 2.5e-161 573.2 533 53.7
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 1.7e-157 560.5 711 47.3
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 1.9e-156 557.0 632 48.1
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 8.2e-136 488.4 656 42.4
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 1.2e-118 431.4 636 38.5
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 5.9e-118 429.1 302 71.9
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 5.9e-118 429.1 302 71.9
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.0e-117 428.3 294 72.8
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 7.2e-116 422.2 438 50.9
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 8.3e-104 382.1 632 37.7
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 5.5e-100 369.4 621 35.6
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 2.0e-97 360.9 515 41.6
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 5.5e-92 342.8 658 34.2
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 5.9e-86 322.8 643 33.6
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 4.9e-72 276.6 753 29.0
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 4.4e-65 253.4 355 40.3
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 8.6e-61 239.2 178 65.7
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 1.9e-55 221.5 262 46.9
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 6.7e-37 159.8 126 63.5
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 2.4e-34 151.4 285 35.4
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 2.1e-27 128.3 132 51.5
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 5.8e-25 120.2 166 42.8
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 1.6e-22 112.1 84 63.1
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 2.8e-19 101.3 130 43.1
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 5.3e-18 97.1 78 61.5
Medtr6g072640 Medicago truncatula HOM05D006302 ORTHO05D007960 8.8e-13 79.7 61 65.6
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 4.3e-12 77.4 71 54.9
Medtr6g072310 Medicago truncatula HOM05D000005 ORTHO05D000012 1.4e-10 72.4 76 51.3
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 3.4e-09 67.8 40 72.5
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 7.7e-09 66.6 43 69.8
Medtr6g074160 Medicago truncatula HOM05D006302 ORTHO05D007960 1.3e-08 65.9 41 73.2
Medtr6g074780 Medicago truncatula HOM05D000005 ORTHO05D000012 2.9e-08 64.7 37 78.4
Medtr6g478020 Medicago truncatula HOM05D000005 ORTHO05D000012 2.5e-07 61.6 42 69.0
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 4.2e-07 60.8 37 70.3


User provided reference genes

Program Settings