Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 2.2e-152 542.3 292 100.0
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 6.9e-122 441.0 284 88.0
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 2.2e-107 392.9 280 81.4
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 5.9e-105 384.8 294 75.5
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 7.2e-103 377.9 294 71.8
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 8.8e-101 370.9 294 71.8
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 5.7e-100 368.2 284 72.2
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 2.8e-99 365.9 294 65.3
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 1.1e-98 364.0 294 70.4
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 4.1e-98 362.1 265 73.2
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 9.1e-98 360.9 294 64.6
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 2.3e-93 346.3 294 62.6
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 1.2e-89 334.0 260 67.3
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 4.0e-85 318.9 263 63.9
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 6.1e-78 295.0 289 55.4
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 1.4e-77 293.9 195 74.4
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 3.4e-76 289.3 210 69.5
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 6.4e-75 285.0 207 67.1
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 3.2e-74 282.7 204 68.6
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 3.5e-73 279.3 200 70.0
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 4.6e-73 278.9 203 69.0
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 5.9e-73 278.5 199 68.8
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 3.9e-72 275.8 174 74.1
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 6.6e-72 275.0 205 65.9
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 1.9e-71 273.5 196 70.4
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 3.3e-71 272.7 212 65.6
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 9.5e-71 271.2 195 72.3
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 2.1e-70 270.0 184 73.4
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 2.1e-70 270.0 212 63.7
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.2e-68 264.2 195 69.2
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 1.5e-68 263.8 204 65.2
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 1.5e-68 263.8 195 69.2
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 2.6e-68 263.1 187 68.4
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 4.4e-68 262.3 209 64.6
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 9.8e-68 261.2 205 63.4
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.7e-67 260.4 195 68.7
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 1.7e-67 260.4 208 63.5
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 3.7e-67 259.2 191 64.9
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 4.9e-67 258.8 212 63.7
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 4.9e-67 258.8 195 68.7
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 4.9e-67 258.8 205 62.4
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 6.4e-67 258.5 174 72.4
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 6.4e-67 258.5 240 57.1
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 8.3e-67 258.1 205 62.0
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 8.3e-67 258.1 205 62.0
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 3.2e-66 256.1 205 61.5
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 7.0e-66 255.0 175 72.0
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 9.2e-66 254.6 204 62.7
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 9.2e-66 254.6 191 64.4
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 1.2e-65 254.2 209 62.7
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 2.0e-65 253.4 233 58.4
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 2.0e-65 253.4 184 67.4
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 2.7e-65 253.1 204 59.8
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 2.7e-65 253.1 203 63.5
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 6.0e-65 251.9 210 61.4
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 7.8e-65 251.5 210 61.0
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 7.8e-65 251.5 210 61.4
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 7.8e-65 251.5 166 72.3
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 1.0e-64 251.1 213 61.5
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 1.3e-64 250.8 174 67.2
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 1.7e-64 250.4 206 60.7
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 2.3e-64 250.0 190 66.8
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 6.6e-64 248.4 208 59.6
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 3.3e-63 246.1 208 62.0
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 7.3e-63 245.0 209 60.8
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 9.5e-63 244.6 172 66.9
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 2.1e-62 243.4 171 69.0
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 6.2e-62 241.9 187 65.2
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 8.1e-62 241.5 196 59.2
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 2.3e-61 240.0 206 60.2
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 8.9e-61 238.0 174 67.8
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.5e-60 237.3 257 52.5
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 2.6e-60 236.5 208 58.7
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 2.6e-60 236.5 192 59.9
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 3.4e-60 236.1 205 56.6
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 7.5e-60 235.0 274 48.5
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 1.9e-58 230.3 177 63.3
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 2.4e-58 229.9 177 64.4
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 3.2e-58 229.6 205 57.1
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 1.2e-57 227.6 177 63.8
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 1.6e-57 227.3 179 62.0
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 2.7e-57 226.5 170 64.7
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 6.0e-57 225.3 173 63.6
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 7.8e-57 224.9 184 60.3
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 1.3e-56 224.2 177 61.0
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 5.1e-56 222.2 172 61.6
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 8.6e-56 221.5 174 61.5
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 2.5e-55 219.9 174 61.5
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 3.3e-55 219.5 174 60.3
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 4.3e-55 219.2 174 61.5
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 7.3e-55 218.4 174 60.9
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 2.8e-54 216.5 174 60.3
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 5.4e-50 202.2 124 78.2
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 2.4e-45 186.8 198 49.5
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 2.0e-44 183.7 168 55.4
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 1.3e-40 171.0 113 73.5
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 3.0e-40 169.9 124 69.4
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 3.9e-40 169.5 130 65.4
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 7.3e-39 165.2 170 48.8
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 4.8e-38 162.5 137 59.1
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 2.6e-36 156.8 139 59.7
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 2.2e-35 153.7 140 55.7
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 3.8e-35 152.9 171 46.2
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 4.3e-31 139.4 179 40.2
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 3.1e-29 133.3 174 40.2
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 5.3e-29 132.5 174 42.0
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 5.3e-29 132.5 136 57.4
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 2.6e-28 130.2 110 57.3
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 9.3e-26 121.7 70 82.9
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 6.0e-25 119.0 94 64.9
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 3.7e-14 83.2 87 52.9
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 1.1e-13 81.6 48 81.2
Medtr6g471100 Medicago truncatula HOM05D000162 ORTHO05D000090 3.1e-13 80.1 142 39.4
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 3.8e-11 73.2 52 69.2
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 1.6e-09 67.8 82 45.1
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 7.9e-09 65.5 83 45.8
Zm00001eb050690 Zea mays HOM05D006388 ORTHO05D008026 2.3e-08 63.9 48 60.4
Cre02.g083400 Chlamydomonas reinhardtii HOM05D006388 ORTHO05D008026 2.8e-06 57.0 171 30.4


User provided reference genes

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