Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G157400 Glycine max HOM05D007655 ORTHO05D009698 6.6e-153 544.3 333 100.0
Phvul.004G132400 Phaseolus vulgaris HOM05D007655 ORTHO05D009698 1.1e-99 367.5 334 70.1
VMungo0464G0151 Vigna mungo HOM05D007655 ORTHO05D009698 1.8e-94 350.1 334 71.6
Lj2g0024512 Lotus japonicus HOM05D007655 ORTHO05D009698 4.5e-85 318.9 337 64.1
Ca_19338_v3 Cicer arietinum L. HOM05D007655 ORTHO05D009698 4.7e-82 308.9 328 57.6
Lalb_Chr03g0033351 Lupinus albus HOM05D007655 ORTHO05D009698 9.1e-78 294.7 343 49.6
Psat1g113880 Pisum sativum HOM05D007655 ORTHO05D009698 1.9e-75 287.0 331 47.7
TPR.G40357 Trifolium pratense HOM05D007655 ORTHO05D009698 2.8e-71 273.1 330 47.3
Ca_25253_v3 Cicer arietinum L. HOM05D007655 ORTHO05D009698 3.2e-70 269.6 310 49.7
Medtr6g065100 Medicago truncatula HOM05D007655 ORTHO05D009698 4.0e-65 252.7 333 57.4
Haze_22616 Corylus avellana HOM05D007655 ORTHO05D009698 2.3e-52 210.3 327 48.9
Cfa013933 Carpinus fangiana HOM05D007655 ORTHO05D009698 5.1e-52 209.1 338 45.6
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 3.9e-44 183.0 333 48.9
CiPaw.02G194200 Carya illinoinensis HOM05D007655 ORTHO05D009698 8.6e-44 181.8 337 45.7
FAN06G4929 Fragaria x ananassa HOM05D007655 ORTHO05D009698 4.3e-43 179.5 332 50.0
FvH4_7g24790 Fragaria vesca HOM05D007655 ORTHO05D009698 2.8e-42 176.8 332 49.4
Gohir.A06G170600 Gossypium hirsutum HOM05D007655 ORTHO05D009698 5.2e-41 172.6 300 51.0
PGR044G0328 Punica granatum HOM05D007655 ORTHO05D009698 2.6e-40 170.2 280 53.6
arahy.Tifrunner.gnm1.ann1.P4Y6YZ Arachis hypogaea HOM05D000585 ORTHO05D001841 2.9e-39 166.8 146 56.2
Carub.0005s2276 Capsella rubella HOM05D007655 ORTHO05D009698 2.4e-38 163.7 311 44.7
C08p31340 Brassica napus HOM05D007655 ORTHO05D009698 3.2e-38 163.3 285 51.6
BolC8t50755H Brassica oleracea HOM05D007655 ORTHO05D009698 3.2e-38 163.3 285 51.6
Aa31LG5G19330 Aethionema arabicum HOM05D007655 ORTHO05D009698 4.2e-38 162.9 328 47.9
A09p48980 Brassica napus HOM05D007655 ORTHO05D009698 5.4e-38 162.5 331 46.8
BraA09t40353Z Brassica rapa HOM05D007655 ORTHO05D009698 5.4e-38 162.5 331 46.8
RcHm_v2.0_Chr1g0370651 Rosa chinensis HOM05D007655 ORTHO05D009698 5.4e-38 162.5 334 48.8
arahy.Tifrunner.gnm1.ann1.L8T4NM Arachis hypogaea HOM05D007655 ORTHO05D009698 9.3e-38 161.8 158 53.8
Sp5g06510 Schrenkiella parvula HOM05D007655 ORTHO05D009698 9.3e-38 161.8 291 50.5
QL08p063505 Quercus lobata HOM05D007655 ORTHO05D009698 1.2e-37 161.4 336 49.1
AT3G56030 Arabidopsis thaliana HOM05D007655 ORTHO05D009698 1.6e-37 161.0 324 41.7
Atru.chr12.88 Acer truncatum HOM05D007655 ORTHO05D009698 4.6e-37 159.5 327 34.3
Hma1.2p1_0523F.1_g172110 Hydrangea macrophylla HOM05D007655 ORTHO05D009698 4.6e-37 159.5 296 48.0
DCAR_029510 Daucus carota HOM05D007655 ORTHO05D009698 1.0e-36 158.3 322 34.2
AL5G37300 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 1.3e-36 157.9 322 42.2
Cpa.g.sc19.153 Carica papaya HOM05D007655 ORTHO05D009698 1.9e-35 154.1 308 51.3
Nitab4.5_0002701g0030 Nicotiana tabacum HOM05D007655 ORTHO05D009698 3.3e-35 153.3 294 46.3
CAN.G1161.24 Capsicum annuum HOM05D007655 ORTHO05D009698 4.3e-35 152.9 311 39.2
COL.COLO4_06431 Corchorus olitorius HOM05D007655 ORTHO05D009698 7.3e-35 152.1 337 45.7
FAN10G0222 Fragaria x ananassa HOM05D007655 ORTHO05D009698 9.6e-35 151.8 332 45.5
Actinidia00669 Actinidia chinensis HOM05D007655 ORTHO05D009698 1.3e-34 151.4 300 35.7
CANSAT56G4119 Cannabis sativa HOM05D007655 ORTHO05D009698 1.6e-34 151.0 301 49.5
Thecc.10G013100 Theobroma cacao HOM05D007655 ORTHO05D009698 3.6e-34 149.8 304 48.0
Cc00_g02280 Coffea canephora HOM05D007655 ORTHO05D009698 6.2e-34 149.1 290 47.2
HanXRQChr09g0253251 Helianthus annuus HOM05D007655 ORTHO05D009698 6.2e-34 149.1 324 38.6
Lj1P959T25 Lonicera japonica HOM05D007655 ORTHO05D009698 2.4e-33 147.1 312 48.4
Gohir.D06G178400 Gossypium hirsutum HOM05D007655 ORTHO05D009698 6.9e-33 145.6 300 47.7
CARHR166100 Cardamine hirsuta HOM05D007655 ORTHO05D009698 5.8e-32 142.5 307 47.2
Gorai.N006800 Gossypium raimondii HOM05D007655 ORTHO05D009698 9.9e-32 141.7 300 47.3
Thhalv10006093m.g Eutrema salsugineum HOM05D007655 ORTHO05D009698 2.9e-31 140.2 291 48.8
Lalb_Chr19g0131421 Lupinus albus HOM05D007655 ORTHO05D009698 1.9e-30 137.5 169 42.0
MSTRG.197 Avicennia marina HOM05D007655 ORTHO05D009698 2.4e-30 137.1 317 30.9
TWI09G1069 Tripterygium wilfordii HOM05D007655 ORTHO05D009698 7.1e-30 135.6 321 45.2
Aqoxy3G03604 Aquilegia oxysepala HOM05D007655 ORTHO05D009698 2.7e-29 133.7 319 46.1
FAN03G2547 Fragaria x ananassa HOM05D007655 ORTHO05D009698 1.3e-26 124.8 324 44.1
Ciclev10033792m.g Citrus clementina HOM05D007655 ORTHO05D000636 6.2e-26 122.5 294 47.3
Sc14g0002050 Simmondsia chinensis HOM05D007655 ORTHO05D009698 6.2e-26 122.5 300 44.3
Peaxi162Scf00304g00006 Petunia axillaris HOM05D007655 ORTHO05D009698 1.1e-25 121.7 305 29.8
GSVIVG01032781001 Vitis vinifera HOM05D007655 ORTHO05D009698 4.0e-25 119.8 146 45.2
Duzib106G0934 Durio zibethinus HOM05D007655 ORTHO05D009698 6.9e-25 119.0 341 42.8
TAR623G1347 Trochodendron aralioides HOM05D007655 ORTHO05D009698 1.2e-24 118.2 292 45.9
TAR131G0001 Trochodendron aralioides HOM05D007655 ORTHO05D009698 2.6e-24 117.1 292 45.5
Prupe.2G253200 Prunus persica HOM05D000815 ORTHO05D000636 5.8e-24 115.9 300 43.0
ECA232G4997 Erigeron canadensis HOM05D007655 ORTHO05D009698 9.9e-24 115.2 322 40.7
Nitab4.5_0006468g0020 Nicotiana tabacum HOM05D007655 ORTHO05D009698 4.9e-23 112.8 332 40.4
Aa31LG10G10970 Aethionema arabicum HOM05D007655 ORTHO05D009698 5.4e-22 109.4 289 44.3
AT2G40240 Arabidopsis thaliana HOM05D007655 ORTHO05D009698 2.1e-21 107.5 328 43.3
PGSC0003DMG400027723 Solanum tuberosum HOM05D007655 ORTHO05D009698 2.7e-21 107.1 321 38.6
Rhsim09G0178900 Rhododendron simsii HOM05D007655 ORTHO05D009698 4.6e-21 106.3 290 45.9
CARHR135280 Cardamine hirsuta HOM05D007655 ORTHO05D009698 6.0e-21 105.9 338 41.1
Solyc03g095960.1 Solanum lycopersicum HOM05D007655 ORTHO05D009698 6.0e-21 105.9 326 39.0
MBI15_g28821_MAGBIO Magnolia biondii HOM05D007655 ORTHO05D009698 1.3e-20 104.8 167 37.7
Sopen03g025960 Solanum pennellii HOM05D007655 ORTHO05D009698 3.9e-20 103.2 326 38.0
Haze_17251 Corylus avellana HOM05D007655 ORTHO05D009698 5.1e-20 102.8 139 43.2
AL4G37960 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 8.7e-20 102.1 333 42.0
Carub.0004s2246 Capsella rubella HOM05D007655 ORTHO05D009698 1.1e-19 101.7 292 44.5
vmacro10028 Vaccinium macrocarpon HOM05D007655 ORTHO05D009698 1.5e-19 101.3 319 42.9
CSS0030670 Camellia sinensis var. sinensis HOM05D007655 ORTHO05D009698 2.8e-18 97.1 186 54.3
Migut.F01479 Erythranthe guttata HOM05D007655 ORTHO05D009698 1.4e-17 94.7 279 46.2
Sopen03g025950 Solanum pennellii HOM05D007655 ORTHO05D009698 3.1e-17 93.6 330 37.0
FAN01G0024 Fragaria x ananassa HOM05D007655 ORTHO05D009698 2.6e-16 90.5 190 52.6
THA.LOC104810115 Tarenaya hassleriana HOM05D007655 ORTHO05D009698 4.5e-16 89.7 303 41.6
Lsat_1_v5_gn_9_61061 Lactuca sativa HOM05D007655 ORTHO05D009698 4.9e-15 86.3 145 38.6
Oeu029071.1 Olea europaea HOM05D007655 ORTHO05D009698 9.3e-14 82.0 117 42.7
SalBow5G5388 Salvia bowleyana HOM05D007655 ORTHO05D009698 7.9e-13 79.0 147 38.8
arahy.Tifrunner.gnm1.ann1.AV2QAA Arachis hypogaea HOM05D000023 ORTHO05D000014 1.5e-11 74.7 64 54.7
CDE12G0438 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 9.6e-11 72.0 141 34.8
CDE06G0331 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 6.2e-10 69.3 105 38.1
CDE04G2579 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 1.4e-09 68.2 98 35.7
Nn2g13207 Nelumbo nucifera HOM05D007655 ORTHO05D009698 8.4e-07 58.9 80 42.5


User provided reference genes

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