Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G154800 Glycine max HOM05D007581 ORTHO05D009250 4.1e-45 184.9 134 100.0
Glyma.16G205300 Glycine max HOM05D007581 ORTHO05D009250 4.2e-42 174.9 134 88.8
Phvul.004G128300 Phaseolus vulgaris HOM05D007581 ORTHO05D009250 6.8e-40 167.5 134 82.8
Medtr6g060172 Medicago truncatula HOM05D007581 ORTHO05D009250 9.2e-37 157.1 133 83.5
Ca_02136_v3 Cicer arietinum L. HOM05D007581 ORTHO05D009250 9.5e-34 147.1 133 86.5
Lj2g0009073 Lotus japonicus HOM05D007581 ORTHO05D009250 2.0e-31 139.4 134 76.1
Lalb_Chr01g0008751 Lupinus albus HOM05D007581 ORTHO05D009250 2.9e-30 135.6 129 84.5
Eucgr.F04100 Eucalyptus grandis HOM05D007581 ORTHO05D009250 1.6e-28 129.8 130 77.7
CsaV3_5G039340 Cucumis sativus L. HOM05D007581 ORTHO05D009250 7.8e-28 127.5 134 73.9
CANSAT25G1375 Cannabis sativa HOM05D007581 ORTHO05D009250 1.0e-27 127.1 131 77.1
CANSAT25G2017 Cannabis sativa HOM05D007581 ORTHO05D009250 1.0e-27 127.1 131 77.1
MELO3C022112.2 Cucumis melo HOM05D007581 ORTHO05D009250 1.7e-27 126.3 134 73.1
ClCG08G001940 Citrullus lanatus HOM05D007581 ORTHO05D009250 1.5e-26 123.2 131 71.0
Peaxi162Scf00078g01222 Petunia axillaris HOM05D007581 ORTHO05D009250 2.5e-26 122.5 134 61.2
Sed0022412 Sechium edule HOM05D007581 ORTHO05D009250 2.5e-26 122.5 131 74.0
CSS0015328 Camellia sinensis var. sinensis HOM05D007581 ORTHO05D009250 3.3e-26 122.1 135 63.7
TPR.G20128 Trifolium pratense HOM05D007581 ORTHO05D009250 1.2e-25 120.2 130 78.5
Nitab4.5_0000079g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 1.6e-25 119.8 133 62.4
Dinv37395 Davidia involucrata HOM05D007581 ORTHO05D009250 2.8e-25 119.0 136 71.3
Nitab4.5_0006526g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 3.6e-25 118.6 133 61.7
Prupe.8G001100 Prunus persica HOM05D007581 ORTHO05D009250 3.6e-25 118.6 139 66.9
ECA247G3877 Erigeron canadensis HOM05D007581 ORTHO05D009250 4.7e-25 118.2 133 63.9
Manes.15G183800 Manihot esculenta HOM05D007581 ORTHO05D009250 1.1e-24 117.1 131 68.7
Lsat_1_v5_gn_1_24761 Lactuca sativa HOM05D007581 ORTHO05D009250 1.4e-24 116.7 132 72.0
Lalb_Chr02g0149891 Lupinus albus HOM05D007581 ORTHO05D009250 2.3e-24 115.9 136 70.6
PSO210G2853 Papaver somniferum HOM05D007581 ORTHO05D009250 2.3e-24 115.9 131 73.3
Potri.019G063300 Populus trichocarpa HOM05D007581 ORTHO05D009250 2.3e-24 115.9 131 66.4
EL10Ac1g01297 Beta vulgaris HOM05D007581 ORTHO05D009250 3.1e-24 115.5 138 68.1
MD00G1103300 Malus domestica HOM05D007581 ORTHO05D009250 3.1e-24 115.5 141 64.5
TAR628G1203 Trochodendron aralioides HOM05D007581 ORTHO05D009250 5.2e-24 114.8 129 75.2
CiPaw.04G007300 Carya illinoinensis HOM05D007581 ORTHO05D009250 6.8e-24 114.4 132 72.7
Sabra19G0076500 Salix brachista HOM05D007581 ORTHO05D009250 6.8e-24 114.4 133 70.7
Sabra19G0080300 Salix brachista HOM05D007581 ORTHO05D009250 6.8e-24 114.4 133 70.7
PGSC0003DMG400016228 Solanum tuberosum HOM05D007581 ORTHO05D009250 6.8e-24 114.4 131 62.6
Aqoxy6G00030 Aquilegia oxysepala HOM05D007581 ORTHO05D009250 2.6e-23 112.5 134 63.4
Atru.chr13.2628 Acer truncatum HOM05D007581 ORTHO05D009250 4.4e-23 111.7 131 68.7
Haze_14032 Corylus avellana HOM05D007581 ORTHO05D009250 4.4e-23 111.7 130 72.3
Psat1g111920 Pisum sativum HOM05D007581 ORTHO05D009250 7.5e-23 110.9 118 73.7
CAN.G630.61 Capsicum annuum HOM05D007581 ORTHO05D009250 1.3e-22 110.2 132 60.6
FAN19G1324 Fragaria x ananassa HOM05D007581 ORTHO05D009250 1.7e-22 109.8 139 60.4
Nn5g27166 Nelumbo nucifera HOM05D007581 ORTHO05D009250 2.9e-22 109.0 132 72.7
Migut.C01409 Erythranthe guttata HOM05D007581 ORTHO05D009250 8.3e-22 107.5 141 69.5
MBI06_g43033_MAGBIO Magnolia biondii HOM05D007581 ORTHO05D009250 1.4e-21 106.7 133 66.9
Sopen11g004800 Solanum pennellii HOM05D007581 ORTHO05D009250 1.4e-21 106.7 131 59.5
QL09p000889 Quercus lobata HOM05D007581 ORTHO05D009250 3.2e-21 105.5 128 71.9
SGA_v2.0_scaffold118G32651 Striga asiatica HOM05D007581 ORTHO05D009250 4.1e-21 105.1 130 56.9
Zm00001eb145430 Zea mays HOM05D007581 ORTHO05D009250 4.1e-21 105.1 133 68.4
BcaB05g23909 Brassica carinata HOM05D007581 ORTHO05D009250 5.4e-21 104.8 131 66.4
MSTRG.25512 Avicennia marina HOM05D007581 ORTHO05D009250 7.1e-21 104.4 135 69.6
FvH4_2g00130 Fragaria vesca HOM05D007581 ORTHO05D009250 7.1e-21 104.4 136 62.5
FAN24G1736 Fragaria x ananassa HOM05D007581 ORTHO05D009250 7.1e-21 104.4 136 62.5
Sc26g0002080 Simmondsia chinensis HOM05D007581 ORTHO05D009250 1.2e-20 103.6 129 63.6
Aa31LG9G11680 Aethionema arabicum HOM05D007581 ORTHO05D009250 1.6e-20 103.2 133 63.2
THA.LOC104815611 Tarenaya hassleriana HOM05D007581 ORTHO05D009250 2.1e-20 102.8 131 71.8
Sp6g07100 Schrenkiella parvula HOM05D007581 ORTHO05D009250 2.7e-20 102.4 132 65.9
GSVIVG01037110001 Vitis vinifera HOM05D007581 ORTHO05D009250 2.7e-20 102.4 133 58.6
TWI18G0093 Tripterygium wilfordii HOM05D007581 ORTHO05D009250 3.5e-20 102.1 129 63.6
Gohir.A08G228600 Gossypium hirsutum HOM05D007581 ORTHO05D009250 7.8e-20 100.9 129 68.2
RcHm_v2.0_Chr6g0249391 Rosa chinensis HOM05D007581 ORTHO05D009250 7.8e-20 100.9 137 67.9
Solyc11g009030.1 Solanum lycopersicum HOM05D007581 ORTHO05D009250 7.8e-20 100.9 131 59.5
Cc10_g16220 Coffea canephora HOM05D007581 ORTHO05D009250 1.0e-19 100.5 127 67.7
BcaC03g16403 Brassica carinata HOM05D007581 ORTHO05D009250 1.7e-19 99.8 131 67.9
A02p26660 Brassica napus HOM05D007581 ORTHO05D009250 1.7e-19 99.8 131 67.9
C02p42350 Brassica napus HOM05D007581 ORTHO05D009250 1.7e-19 99.8 131 67.9
BraA02t07670Z Brassica rapa HOM05D007581 ORTHO05D009250 1.7e-19 99.8 131 67.9
Thhalv10029062m.g Eutrema salsugineum HOM05D007581 ORTHO05D009250 1.7e-19 99.8 131 61.8
Gorai.004G265500 Gossypium raimondii HOM05D007581 ORTHO05D009250 1.7e-19 99.8 131 67.2
BolC2t10277H Brassica oleracea HOM05D007581 ORTHO05D009250 2.3e-19 99.4 131 64.1
Hund16921 Selenicereus undatus HOM05D007581 ORTHO05D009250 3.0e-19 99.0 138 68.1
HPP92_009197 Vanilla planifolia HOM05D007581 ORTHO05D009250 5.1e-19 98.2 127 68.5
Carub.0006s2893 Capsella rubella HOM05D007581 ORTHO05D009250 6.6e-19 97.8 129 65.1
AL6G44200 Arabidopsis lyrata HOM05D007581 ORTHO05D009250 1.1e-18 97.1 129 67.4
AT4G10330 Arabidopsis thaliana HOM05D007581 ORTHO05D009250 1.5e-18 96.7 132 57.6
Ciclev10022815m.g Citrus clementina HOM05D007581 ORTHO05D009250 1.5e-18 96.7 131 67.9
Gohir.D08G248900 Gossypium hirsutum HOM05D007581 ORTHO05D009250 1.9e-18 96.3 131 58.8
Os01g0886500 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 1.9e-18 96.3 123 57.7
VMungo0464G1076 Vigna mungo HOM05D007581 ORTHO05D009250 2.5e-18 95.9 128 56.2
Duzib116G0131 Durio zibethinus HOM05D007581 ORTHO05D009250 7.3e-18 94.4 137 53.3
CARHR256310 Cardamine hirsuta HOM05D007581 ORTHO05D009250 9.5e-18 94.0 133 65.4
ATR1089G122 Amborella trichopoda HOM05D007581 ORTHO05D009250 1.2e-17 93.6 137 66.4
Os11g0242700 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 2.1e-17 92.8 130 68.5
AUR62013400 Chenopodium quinoa HOM05D007581 ORTHO05D009250 2.3e-16 89.4 162 58.6
Cpa.g.sc21.238 Carica papaya HOM05D007581 ORTHO05D009250 1.4e-13 80.1 83 69.9
Zm00001eb168090 Zea mays HOM05D007581 ORTHO05D009250 5.4e-13 78.2 130 65.4
MD05G1000400 Malus domestica HOM05D007581 ORTHO05D009250 2.7e-12 75.9 101 62.4
DCAR_014049 Daucus carota HOM05D000133 ORTHO05D000259 3.5e-12 75.5 158 41.8
unitig_578.g16109 Utricularia gibba HOM05D007581 ORTHO05D009250 4.6e-12 75.1 132 62.9
PSO761G0508 Papaver somniferum HOM05D007581 ORTHO05D009250 1.3e-11 73.6 90 76.7
HanXRQChr04g0102981 Helianthus annuus HOM05D007581 ORTHO05D009250 1.5e-10 70.1 88 79.5
Oeu028611.1 Olea europaea HOM05D007581 ORTHO05D009250 2.5e-10 69.3 91 74.7
COL.COLO4_25109 Corchorus olitorius HOM05D007581 ORTHO05D009250 4.7e-09 65.1 97 69.1
MD02G1202800 Malus domestica HOM05D007581 ORTHO05D009250 1.5e-07 60.1 99 49.5
TWI75G0477 Tripterygium wilfordii HOM05D007581 ORTHO05D009250 2.6e-07 59.3 98 68.4
QL09p000872 Quercus lobata HOM05D007581 ORTHO05D009250 3.4e-07 58.9 90 76.7
Cfa008025 Carpinus fangiana HOM05D007581 ORTHO05D009250 7.6e-07 57.8 33 81.8
AUR62038551 Chenopodium quinoa HOM05D007581 ORTHO05D009250 2.2e-06 56.2 131 38.2
Pp3c23_16920 Physcomitrium patens HOM05D020710 ORTHO05D030470 2.2e-06 56.2 136 56.6
Mapoly0034s0024 Marchantia polymorpha HOM05D020710 ORTHO05D009250 4.9e-06 55.1 129 57.4
SMO358G0598 Selaginella moellendorffii HOM05D020710 ORTHO05D030470 6.4e-06 54.7 127 56.7


User provided reference genes

Program Settings