Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G152800 Glycine max HOM05D001194 ORTHO05D005909 6.1e-103 377.5 190 100.0
Glyma.08G196200 Glycine max HOM05D001194 ORTHO05D005909 4.0e-86 321.6 211 82.9
Glyma.07G012500 Glycine max HOM05D001194 ORTHO05D005909 1.2e-85 320.1 211 82.5
VMungo0331G0238 Vigna mungo HOM05D001194 ORTHO05D005909 1.2e-85 320.1 211 82.0
Phvul.010G142000 Phaseolus vulgaris HOM05D001194 ORTHO05D005909 1.5e-85 319.7 211 82.5
VMungo0331G0168 Vigna mungo HOM05D001194 ORTHO05D005909 2.0e-85 319.3 211 82.5
Phvul.010G141900 Phaseolus vulgaris HOM05D001194 ORTHO05D005909 2.6e-85 318.9 211 81.0
Lalb_Chr04g0263101 Lupinus albus HOM05D001194 ORTHO05D005909 4.4e-85 318.2 211 81.0
arahy.Tifrunner.gnm1.ann1.2JHZ20 Arachis hypogaea HOM05D001194 ORTHO05D005909 2.0e-82 309.3 211 76.3
arahy.Tifrunner.gnm1.ann1.U81MKX Arachis hypogaea HOM05D001194 ORTHO05D005909 2.0e-82 309.3 211 76.3
Manes.04G137500 Manihot esculenta HOM05D001194 ORTHO05D005909 2.7e-82 308.9 211 77.7
Lj3g0001136 Lotus japonicus HOM05D001194 ORTHO05D005909 6.0e-82 307.8 208 77.9
QL05p015826 Quercus lobata HOM05D001194 ORTHO05D005909 1.7e-81 306.2 210 76.2
Atru.chr1.3635 Acer truncatum HOM05D001194 ORTHO05D005909 2.3e-81 305.8 211 76.8
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 5.0e-81 304.7 211 76.3
CiPaw.01G227200 Carya illinoinensis HOM05D001194 ORTHO05D005909 8.6e-81 303.9 211 76.3
arahy.Tifrunner.gnm1.ann1.3FEZ81 Arachis hypogaea HOM05D001194 ORTHO05D005909 9.5e-80 300.4 208 76.4
CANSAT56G1148 Cannabis sativa HOM05D001194 ORTHO05D005909 9.5e-80 300.4 211 75.4
Medtr8g015600 Medicago truncatula HOM05D001194 ORTHO05D005909 9.5e-80 300.4 211 75.4
Lj3g0000235 Lotus japonicus HOM05D001194 ORTHO05D005909 1.2e-79 300.1 211 75.8
Psat4g194400 Pisum sativum HOM05D001194 ORTHO05D005909 1.2e-79 300.1 211 75.8
TAR626G1853 Trochodendron aralioides HOM05D001194 ORTHO05D005909 1.6e-79 299.7 211 73.5
GSVIVG01016891001 Vitis vinifera HOM05D001194 ORTHO05D005909 1.6e-79 299.7 211 74.9
Dinv37933 Davidia involucrata HOM05D001194 ORTHO05D005909 2.1e-79 299.3 211 75.4
Thecc.06G107800 Theobroma cacao HOM05D001194 ORTHO05D005909 2.1e-79 299.3 211 74.4
Eucgr.J02887 Eucalyptus grandis HOM05D001194 ORTHO05D005909 2.8e-79 298.9 211 74.9
CsaV3_3G044050 Cucumis sativus L. HOM05D001194 ORTHO05D005909 4.7e-79 298.1 211 73.9
COL.COLO4_30608 Corchorus olitorius HOM05D001194 ORTHO05D005909 1.1e-78 297.0 211 73.0
Haze_15919 Corylus avellana HOM05D001194 ORTHO05D005909 1.1e-78 297.0 211 75.4
Sabra01G0156300 Salix brachista HOM05D001194 ORTHO05D005909 3.1e-78 295.4 208 75.5
ClCG07G013590 Citrullus lanatus HOM05D001194 ORTHO05D005909 4.0e-78 295.0 212 74.1
Gohir.D10G063800 Gossypium hirsutum HOM05D001194 ORTHO05D005909 5.2e-78 294.7 211 73.0
Gorai.011G067700 Gossypium raimondii HOM05D001194 ORTHO05D005909 5.2e-78 294.7 211 73.0
Duzib235G0439 Durio zibethinus HOM05D001194 ORTHO05D005909 6.8e-78 294.3 211 72.5
Gohir.A10G062100 Gossypium hirsutum HOM05D001194 ORTHO05D005909 6.8e-78 294.3 211 73.0
Nn6g35406 Nelumbo nucifera HOM05D001194 ORTHO05D005909 6.8e-78 294.3 211 72.0
TWI79G1226 Tripterygium wilfordii HOM05D001194 ORTHO05D005909 8.9e-78 293.9 211 73.9
Cfa003606 Carpinus fangiana HOM05D001194 ORTHO05D005909 1.2e-77 293.5 211 73.9
Sed0016739 Sechium edule HOM05D001194 ORTHO05D005909 1.2e-77 293.5 211 72.5
Potri.001G199600 Populus trichocarpa HOM05D001194 ORTHO05D005909 2.6e-77 292.4 211 73.5
Dinv30399 Davidia involucrata HOM05D001194 ORTHO05D005909 3.4e-77 292.0 211 73.5
Lj5A49T38 Lonicera japonica HOM05D001194 ORTHO05D005909 2.9e-76 288.9 211 76.3
Prupe.3G052600 Prunus persica HOM05D001194 ORTHO05D005909 2.9e-76 288.9 211 72.5
PGR102G0345 Punica granatum HOM05D001194 ORTHO05D005909 2.9e-76 288.9 211 71.1
Sed0012613 Sechium edule HOM05D001194 ORTHO05D005909 2.9e-76 288.9 211 72.5
MD09G1196200 Malus domestica HOM05D001194 ORTHO05D005909 6.4e-76 287.7 211 71.6
Aqoxy7G01307 Aquilegia oxysepala HOM05D001194 ORTHO05D005909 1.1e-75 287.0 211 70.1
Nn8g38927 Nelumbo nucifera HOM05D001194 ORTHO05D005909 7.1e-75 284.3 211 69.7
RcHm_v2.0_Chr2g0142511 Rosa chinensis HOM05D001194 ORTHO05D005909 6.0e-74 281.2 211 69.7
Duzib160G0082 Durio zibethinus HOM05D001194 ORTHO05D005909 1.3e-73 280.0 232 65.5
Ah.01g004470 Amaranthus hybridus HOM05D001194 ORTHO05D005909 1.7e-73 279.6 210 70.5
FAN09G1927 Fragaria x ananassa HOM05D001194 ORTHO05D005909 1.7e-73 279.6 211 69.2
RcHm_v2.0_Chr2g0142481 Rosa chinensis HOM05D001194 ORTHO05D005909 2.3e-73 279.3 213 68.5
MSTRG.22605 Avicennia marina HOM05D001194 ORTHO05D005909 8.6e-73 277.3 208 74.0
Peaxi162Scf00087g00133 Petunia axillaris HOM05D001194 ORTHO05D005909 8.6e-73 277.3 211 72.5
CAN.G410.38 Capsicum annuum HOM05D001194 ORTHO05D005909 5.6e-72 274.6 211 71.6
SGA_v2.0_scaffold71G23749 Striga asiatica HOM05D001194 ORTHO05D005909 7.3e-72 274.2 208 71.6
Hund00742 Selenicereus undatus HOM05D001194 ORTHO05D005909 9.5e-72 273.9 201 72.1
EL10Ac9g21120 Beta vulgaris HOM05D001194 ORTHO05D005909 1.2e-71 273.5 213 67.6
Cc04_g02210 Coffea canephora HOM05D001194 ORTHO05D005909 1.2e-71 273.5 211 69.7
FAN02G4259 Fragaria x ananassa HOM05D001194 ORTHO05D005909 2.1e-71 272.7 211 67.8
PGSC0003DMG402006819 Solanum tuberosum HOM05D001194 ORTHO05D005909 2.8e-71 272.3 211 71.6
Solyc01g068210.3 Solanum lycopersicum HOM05D001194 ORTHO05D005909 3.6e-71 271.9 211 70.1
Sopen01g030150 Solanum pennellii HOM05D001194 ORTHO05D005909 3.6e-71 271.9 211 70.1
arahy.Tifrunner.gnm1.ann1.86BA7N Arachis hypogaea HOM05D001194 ORTHO05D005909 1.1e-70 270.4 188 75.5
CSS0021774 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D005909 1.1e-70 270.4 211 69.7
Nitab4.5_0000316g0210 Nicotiana tabacum HOM05D001194 ORTHO05D005909 1.1e-70 270.4 211 71.1
Nitab4.5_0001543g0050 Nicotiana tabacum HOM05D001194 ORTHO05D005909 1.1e-70 270.4 211 71.1
DCAR_031424 Daucus carota HOM05D001194 ORTHO05D005909 3.1e-70 268.9 211 69.7
MELO3C013031.2 Cucumis melo HOM05D001194 ORTHO05D005909 5.2e-70 268.1 184 75.5
AUR62023909 Chenopodium quinoa HOM05D001194 ORTHO05D005909 6.8e-70 267.7 203 69.5
Actinidia21741 Actinidia chinensis HOM05D001194 ORTHO05D005909 8.9e-70 267.3 211 68.7
PSO063G4370 Papaver somniferum HOM05D001194 ORTHO05D005909 8.9e-70 267.3 211 65.4
PSO832G2057 Papaver somniferum HOM05D001194 ORTHO05D005909 8.9e-70 267.3 211 65.4
vmacro18821 Vaccinium macrocarpon HOM05D001194 ORTHO05D005909 8.9e-70 267.3 211 68.7
CSS0002183 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D005909 1.2e-69 266.9 211 68.7
CSS0036616 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D005909 1.2e-69 266.9 211 68.7
Migut.D00978 Erythranthe guttata HOM05D001194 ORTHO05D005909 2.0e-69 266.2 208 71.2
AUR62038337 Chenopodium quinoa HOM05D001194 ORTHO05D005909 2.6e-69 265.8 201 69.7
THA.LOC104805919 Tarenaya hassleriana HOM05D001194 ORTHO05D005909 5.8e-69 264.6 211 66.8
ECA232G0548 Erigeron canadensis HOM05D001194 ORTHO05D005909 8.4e-68 260.8 211 65.4
Lsat_1_v5_gn_4_96000 Lactuca sativa HOM05D001194 ORTHO05D005909 1.1e-67 260.4 211 66.4
Aa31LG10G3090 Aethionema arabicum HOM05D001194 ORTHO05D005909 2.4e-67 259.2 211 64.9
HanXRQChr09g0276311 Helianthus annuus HOM05D001194 ORTHO05D005909 4.1e-67 258.5 211 66.8
MBI04_g06219_MAGBIO Magnolia biondii HOM05D001194 ORTHO05D005909 4.1e-67 258.5 211 62.6
AL1G59660 Arabidopsis lyrata HOM05D001194 ORTHO05D005909 5.4e-67 258.1 211 64.5
Thhalv10011312m.g Eutrema salsugineum HOM05D001194 ORTHO05D005909 5.4e-67 258.1 211 64.5
Sp1g38360 Schrenkiella parvula HOM05D001194 ORTHO05D005909 5.4e-67 258.1 211 64.5
AT1G51720 Arabidopsis thaliana HOM05D001194 ORTHO05D005909 7.1e-67 257.7 211 64.5
CARHR041880 Cardamine hirsuta HOM05D001194 ORTHO05D005909 7.1e-67 257.7 211 64.5
unitig_748.g7452 Utricularia gibba HOM05D001194 ORTHO05D005909 1.2e-66 256.9 211 66.4
BcaB07g33628 Brassica carinata HOM05D001194 ORTHO05D005909 1.6e-66 256.5 211 64.0
A08p02540 Brassica napus HOM05D001194 ORTHO05D005909 1.6e-66 256.5 211 64.0
C03p90270 Brassica napus HOM05D001194 ORTHO05D005909 1.6e-66 256.5 211 64.0
BolC3t21349H Brassica oleracea HOM05D001194 ORTHO05D005909 1.6e-66 256.5 211 64.0
BraA08t32294Z Brassica rapa HOM05D001194 ORTHO05D005909 1.6e-66 256.5 211 64.0
A06p02290 Brassica napus HOM05D001194 ORTHO05D005909 2.7e-66 255.8 211 64.0
BraA06t23435Z Brassica rapa HOM05D001194 ORTHO05D005909 2.7e-66 255.8 211 64.0
BcaC08g43332 Brassica carinata HOM05D001194 ORTHO05D005909 6.0e-66 254.6 211 63.5
C06p06880 Brassica napus HOM05D001194 ORTHO05D005909 6.0e-66 254.6 211 63.5
BolC6t35794H Brassica oleracea HOM05D001194 ORTHO05D005909 7.8e-66 254.2 211 63.5
BcaC01g01292 Brassica carinata HOM05D001194 ORTHO05D005909 2.3e-65 252.7 212 62.7
Carub.0001s4059 Capsella rubella HOM05D001194 ORTHO05D005909 2.3e-65 252.7 211 62.6
Actinidia32131 Actinidia chinensis HOM05D001194 ORTHO05D005909 3.9e-65 251.9 201 69.2
FAN05G2672 Fragaria x ananassa HOM05D001194 ORTHO05D005909 1.5e-64 250.0 184 70.1
FAN14G3358 Fragaria x ananassa HOM05D001194 ORTHO05D005909 2.5e-64 249.2 184 70.1
Oeu039981.1 Olea europaea HOM05D001194 ORTHO05D005909 2.8e-63 245.7 184 72.8
ATR0789G185 Amborella trichopoda HOM05D001194 ORTHO05D005909 5.2e-62 241.5 211 59.7
HPP92_023231 Vanilla planifolia HOM05D001194 ORTHO05D005909 8.9e-62 240.7 211 59.2
Rhsim08G0231400 Rhododendron simsii HOM05D001194 ORTHO05D005909 2.6e-61 239.2 248 56.9
CDE05G0449 Ceratophyllum demersum HOM05D001194 ORTHO05D005909 1.1e-59 233.8 211 58.3
TPR.G8761 Trifolium pratense HOM05D001194 ORTHO05D005909 1.9e-59 233.0 152 77.6
Os01g0558200 Oryza sativa ssp. japonica HOM05D001194 ORTHO05D005909 1.2e-58 230.3 211 58.3
Potri.001G193600 Populus trichocarpa HOM05D001194 ORTHO05D005909 4.8e-55 218.4 206 61.2
Ca_23295_v3 Cicer arietinum L. HOM05D001194 ORTHO05D005909 1.1e-54 217.2 201 63.2
SEGI_14715 Sequoiadendron giganteum HOM05D001194 ORTHO05D005909 4.4e-53 211.8 208 53.8
Sc12g0009890 Simmondsia chinensis HOM05D001194 ORTHO05D005909 7.6e-53 211.1 163 67.5
Ciclev10025274m.g Citrus clementina HOM05D001194 ORTHO05D005909 9.3e-51 204.1 139 76.3
CiPaw.02G142100 Carya illinoinensis HOM05D001194 ORTHO05D005909 1.7e-49 199.9 129 78.3
MD17G1176900 Malus domestica HOM05D001194 ORTHO05D005909 6.2e-47 191.4 129 75.2
AagrBONN_evm.TU.Sc2ySwM_362.2881 Anthoceros agrestis HOM05D001194 ORTHO05D005909 1.1e-46 190.7 211 46.4
FvH4_6g32960 Fragaria vesca HOM05D001194 ORTHO05D005909 1.8e-46 189.9 129 74.4
Mapoly0010s0062 Marchantia polymorpha HOM05D001194 ORTHO05D005909 7.6e-45 184.5 211 46.0
SMO119G0344 Selaginella moellendorffii HOM05D001194 ORTHO05D005909 1.7e-44 183.3 211 42.7
SMO163G0008 Selaginella moellendorffii HOM05D001194 ORTHO05D005909 1.7e-44 183.3 211 42.7
THA.LOC104817936 Tarenaya hassleriana HOM05D001194 ORTHO05D005909 9.3e-43 177.6 137 66.4
arahy.Tifrunner.gnm1.ann1.YRZZ7C Arachis hypogaea HOM05D001194 ORTHO05D005909 1.3e-41 173.7 115 75.7
SMO347G0060 Selaginella moellendorffii HOM05D001194 ORTHO05D005909 1.3e-41 173.7 211 41.7
Pp3c14_22460 Physcomitrium patens HOM05D001194 ORTHO05D005909 4.8e-39 165.2 211 39.3
Pp3c2_4200 Physcomitrium patens HOM05D001194 ORTHO05D005909 4.0e-38 162.2 211 38.9
arahy.Tifrunner.gnm1.ann1.D8HU13 Arachis hypogaea HOM05D001194 ORTHO05D005909 1.5e-37 160.2 125 66.4
EL10Ac9g21131 Beta vulgaris HOM05D001194 ORTHO05D005909 5.3e-30 135.2 115 65.2
Pp3c1_36440 Physcomitrium patens HOM05D001194 ORTHO05D005909 7.6e-29 131.3 128 45.3
arahy.Tifrunner.gnm1.ann1.N6M4TT Arachis hypogaea HOM05D001194 ORTHO05D005909 5.1e-25 118.6 103 63.1
arahy.Tifrunner.gnm1.ann1.HDE469 Arachis hypogaea HOM05D001194 ORTHO05D021482 8.2e-15 84.7 145 40.7
arahy.Tifrunner.gnm1.ann1.V93RAK Arachis hypogaea HOM05D001194 ORTHO05D021482 5.3e-14 82.0 46 84.8
arahy.Tifrunner.gnm1.ann1.C23CI2 Arachis hypogaea HOM05D001194 ORTHO05D021482 1.5e-13 80.5 46 84.8
arahy.Tifrunner.gnm1.ann1.FTMH30 Arachis hypogaea HOM05D001891 ORTHO05D005832 2.2e-12 76.6 48 83.3
arahy.Tifrunner.gnm1.ann1.H04EJ4 Arachis hypogaea HOM05D001194 ORTHO05D005044 8.5e-12 74.7 57 71.9
arahy.Tifrunner.gnm1.ann1.K82YC3 Arachis hypogaea HOM05D004293 ORTHO05D005044 1.1e-11 74.3 45 86.7
PRCOL_00003219 Prasinoderma coloniale HOM05D001194 ORTHO05D005909 1.1e-11 74.3 148 32.4
arahy.Tifrunner.gnm1.ann1.4DL9G8 Arachis hypogaea HOM05D004293 ORTHO05D005044 1.4e-11 73.9 45 84.4
arahy.Tifrunner.gnm1.ann1.CV7JLA Arachis hypogaea HOM05D004293 ORTHO05D005044 1.9e-11 73.6 71 60.6
MD17G1177000 Malus domestica HOM05D001194 ORTHO05D005909 3.6e-10 69.3 54 63.0
CDE05G3462 Ceratophyllum demersum HOM05D001194 ORTHO05D005909 2.3e-09 66.6 40 72.5
arahy.Tifrunner.gnm1.ann1.Z38AJU Arachis hypogaea HOM05D000237 ORTHO05D082289 8.2e-07 58.2 27 96.3
arahy.Tifrunner.gnm1.ann1.C3SPHV Arachis hypogaea HOM05D002099 ORTHO05D002080 5.3e-06 55.5 27 88.9
Nn1g06230 Nelumbo nucifera HOM05D001194 ORTHO05D021482 5.3e-06 55.5 26 88.5
Nn2g15445 Nelumbo nucifera HOM05D001194 ORTHO05D021482 5.3e-06 55.5 26 88.5


User provided reference genes

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