Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 0.0e+00 1811.2 1012 100.0
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 0.0e+00 1577.4 974 83.6
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 0.0e+00 1534.2 977 82.8
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 0.0e+00 1270.0 960 74.1
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 0.0e+00 1196.8 961 66.1
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 0.0e+00 1184.9 959 65.4
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 0.0e+00 1178.3 978 69.8
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 0.0e+00 1177.2 938 67.8
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 0.0e+00 1162.5 962 67.6
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 0.0e+00 1157.5 954 67.6
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 0.0e+00 1153.7 949 64.1
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 0.0e+00 1147.9 937 64.4
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1142.1 961 62.5
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 0.0e+00 1138.3 980 68.1
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 0.0e+00 1123.6 968 64.0
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 0.0e+00 1113.6 958 61.7
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1111.7 980 60.4
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 0.0e+00 1111.3 958 62.3
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 0.0e+00 1110.5 952 67.5
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 0.0e+00 1110.1 931 62.9
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 0.0e+00 1105.9 952 62.6
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 0.0e+00 1102.8 949 62.7
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 0.0e+00 1096.3 989 60.4
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 0.0e+00 1090.5 956 60.6
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 0.0e+00 1085.1 950 62.5
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 0.0e+00 1083.6 956 62.3
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 4.8e-311 1071.2 955 60.3
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 3.4e-309 1065.1 952 62.5
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 5.8e-309 1064.3 961 59.7
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 7.6e-309 1063.9 924 61.0
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 1.9e-307 1059.3 983 59.1
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 3.9e-305 1051.6 946 63.5
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 6.6e-305 1050.8 956 59.9
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 8.7e-305 1050.4 956 59.9
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 1.1e-304 1050.0 972 59.7
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 9.6e-304 1047.0 955 59.4
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 2.8e-303 1045.4 951 58.4
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 3.1e-302 1042.0 982 59.5
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 1.1e-299 1033.5 926 59.9
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 7.1e-299 1030.8 937 59.2
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 3.5e-298 1028.5 948 58.2
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 6.0e-298 1027.7 938 59.7
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 6.6e-297 1024.2 943 60.2
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 1.1e-296 1023.5 956 57.0
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 2.1e-295 1019.2 984 59.0
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 2.4e-294 1015.8 919 60.7
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 8.1e-287 990.7 983 55.4
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 3.1e-286 988.8 993 57.3
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.1e-286 988.8 983 55.3
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 1.5e-285 986.5 949 60.6
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.4e-285 985.3 981 54.4
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 7.6e-285 984.2 983 55.3
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 2.2e-284 982.6 966 56.7
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.9e-283 979.5 981 54.9
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 3.3e-280 968.8 915 57.3
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 9.6e-280 967.2 959 57.4
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.3e-279 966.8 915 57.3
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 8.2e-279 964.1 842 60.1
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 3.4e-277 958.7 973 55.5
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 1.3e-273 946.8 947 59.6
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 5.7e-272 941.4 947 55.3
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 1.9e-267 926.4 967 53.3
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 1.9e-267 926.4 957 54.4
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 7.9e-266 921.0 980 53.2
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 4.8e-263 911.8 955 53.0
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 1.4e-262 910.2 822 59.1
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 2.6e-261 906.0 911 58.6
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 1.3e-260 903.7 953 52.6
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 7.9e-258 894.4 949 55.4
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 7.9e-258 894.4 956 52.3
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 1.8e-257 893.3 933 54.0
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 5.7e-256 888.3 960 57.3
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 4.8e-255 885.2 836 55.9
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 7.2e-251 871.3 686 64.4
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 2.3e-249 866.3 845 54.7
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 3.9e-249 865.5 825 54.5
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 1.6e-245 853.6 970 50.2
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 1.6e-245 853.6 970 50.2
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 2.0e-245 853.2 972 51.0
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 2.6e-245 852.8 987 48.9
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 3.8e-244 849.0 860 54.0
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 1.9e-243 846.7 971 49.6
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 1.2e-242 844.0 872 53.4
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 1.8e-241 840.1 971 51.5
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 3.0e-241 839.3 973 52.4
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 1.7e-239 833.6 880 53.4
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 4.8e-239 832.0 858 52.7
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 6.3e-239 831.6 876 52.3
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 6.3e-239 831.6 876 52.3
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 1.6e-237 827.0 971 49.9
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 2.9e-236 822.8 863 52.6
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 1.5e-235 820.5 858 52.1
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 1.2e-234 817.4 971 48.5
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 3.1e-230 802.7 787 54.9
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 1.0e-225 787.7 815 50.6
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 1.7e-223 780.4 758 55.4
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.1e-222 777.7 768 53.0
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 5.4e-222 775.4 858 50.3
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 7.5e-216 755.0 480 89.8
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 1.2e-208 731.1 991 44.0
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.2e-197 694.5 537 64.8
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 3.1e-193 679.9 540 62.0
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 2.1e-189 667.2 695 51.2
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 6.0e-189 665.6 545 61.3
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 6.4e-183 645.6 646 54.5
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 6.7e-140 502.7 668 46.4
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 1.3e-135 488.4 468 53.4
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 2.3e-124 451.1 399 58.4
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 3.8e-119 433.7 398 55.0
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 2.7e-96 357.8 394 62.7
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 1.3e-82 312.4 372 49.2
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 1.7e-71 275.4 752 31.0
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 8.7e-63 246.5 286 52.1
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 5.1e-55 220.7 311 39.9
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 8.7e-47 193.4 475 31.4
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 8.7e-47 193.4 475 31.4
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 7.4e-46 190.3 475 31.2
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 9.0e-44 183.3 400 33.0
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 7.2e-41 173.7 184 54.3
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 1.9e-38 165.6 163 50.9
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 7.4e-30 137.1 487 27.5
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 4.5e-27 127.9 434 29.0
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.1e-25 123.2 318 28.6
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.6e-19 102.1 292 28.1
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 5.9e-19 100.9 293 28.0
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 2.0e-14 85.9 56 73.2
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 3.5e-11 75.1 103 45.6
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.1e-09 70.1 198 27.8
Dinv24731 Davidia involucrata HOM05D005963 ORTHO05D006869 1.6e-08 66.2 63 61.9
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 6.8e-07 60.8 151 27.8
Ah.02g131450 Amaranthus hybridus HOM05D002537 ORTHO05D002751 8.8e-07 60.5 99 34.3
AagrBONN_evm.TU.Sc2ySwM_117.2839 Anthoceros agrestis HOM05D002537 ORTHO05D006869 8.8e-07 60.5 273 24.9
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 8.8e-07 60.5 145 29.7
Lsat_1_v5_gn_5_10240 Lactuca sativa HOM05D002537 ORTHO05D002751 1.5e-06 59.7 72 40.3
Cre01.g041800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 2.0e-06 59.3 145 26.9
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 2.6e-06 58.9 141 33.3
CSS0033009 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 4.4e-06 58.2 93 33.3
DCAR_000127 Daucus carota HOM05D002537 ORTHO05D002751 4.4e-06 58.2 82 36.6
DCAR_024631 Daucus carota HOM05D002537 ORTHO05D002751 4.4e-06 58.2 82 36.6
Zm00001eb084860 Zea mays HOM05D002537 ORTHO05D002751 4.4e-06 58.2 72 37.5
Zm00001eb242030 Zea mays HOM05D002537 ORTHO05D002751 4.4e-06 58.2 72 37.5
Aqoxy1G00445 Aquilegia oxysepala HOM05D002537 ORTHO05D002751 5.7e-06 57.8 167 26.3
CSS0009758 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 5.7e-06 57.8 88 34.1
Oeu063117.1 Olea europaea HOM05D003725 ORTHO05D004294 5.7e-06 57.8 130 31.5
CBR_g29752 Chara braunii HOM05D000601 ORTHO05D000407 7.5e-06 57.4 84 38.1
Thecc.03G139900 Theobroma cacao HOM05D002537 ORTHO05D002751 7.5e-06 57.4 72 33.3
PGR102G0822 Punica granatum HOM05D002537 ORTHO05D002751 9.8e-06 57.0 72 34.7


User provided reference genes

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