Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 2.3e-45 185.3 96 100.0
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 1.0e-34 149.8 96 81.2
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 3.1e-26 121.7 95 68.4
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 1.9e-23 112.5 94 64.9
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 1.2e-22 109.8 96 57.3
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 4.6e-22 107.8 87 63.2
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.0e-21 106.7 91 60.4
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.0e-21 106.7 91 58.2
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 2.3e-21 105.5 93 60.2
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 3.9e-21 104.8 98 58.2
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 5.1e-21 104.4 93 54.8
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 5.1e-21 104.4 96 61.5
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 5.1e-21 104.4 91 57.1
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 8.6e-21 103.6 101 58.4
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 8.6e-21 103.6 94 54.3
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 8.6e-21 103.6 95 58.9
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 1.5e-20 102.8 98 53.1
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 2.5e-20 102.1 89 60.7
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 3.3e-20 101.7 97 57.7
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 4.3e-20 101.3 100 55.0
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 5.6e-20 100.9 92 56.5
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 5.6e-20 100.9 91 62.6
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 9.5e-20 100.1 84 56.0
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 9.5e-20 100.1 93 57.0
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 1.2e-19 99.8 90 54.4
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 1.6e-19 99.4 84 63.1
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 1.6e-19 99.4 102 51.0
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 3.6e-19 98.2 94 50.0
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 3.6e-19 98.2 99 51.5
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.6e-19 98.2 88 61.4
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.6e-19 98.2 88 61.4
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 3.6e-19 98.2 88 61.4
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 3.6e-19 98.2 92 52.2
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.1e-18 96.7 97 54.6
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.1e-18 96.7 97 54.6
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 1.1e-18 96.7 97 54.6
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 1.1e-18 96.7 92 50.0
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 1.4e-18 96.3 100 55.0
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 1.4e-18 96.3 95 49.5
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 1.8e-18 95.9 87 58.6
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 2.3e-18 95.5 101 52.5
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 3.1e-18 95.1 94 56.4
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 3.1e-18 95.1 80 56.2
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 4.0e-18 94.7 88 54.5
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 4.0e-18 94.7 95 58.9
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 6.8e-18 94.0 94 52.1
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 6.8e-18 94.0 100 49.0
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 6.8e-18 94.0 100 49.0
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 6.8e-18 94.0 89 50.6
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 6.8e-18 94.0 83 57.8
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 8.9e-18 93.6 92 52.2
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 1.2e-17 93.2 71 66.2
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 1.2e-17 93.2 94 51.1
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 1.5e-17 92.8 88 56.8
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 2.0e-17 92.4 89 48.3
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 2.6e-17 92.0 109 47.7
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 2.6e-17 92.0 88 53.4
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 2.6e-17 92.0 89 57.3
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 2.6e-17 92.0 105 46.7
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 2.6e-17 92.0 99 50.5
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 3.4e-17 91.7 90 53.3
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 3.4e-17 91.7 98 51.0
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 5.8e-17 90.9 93 47.3
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 7.6e-17 90.5 88 51.1
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 7.6e-17 90.5 105 45.7
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 7.6e-17 90.5 95 48.4
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 7.6e-17 90.5 93 50.5
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 9.9e-17 90.1 98 51.0
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 9.9e-17 90.1 68 60.3
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 1.3e-16 89.7 86 51.2
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 1.7e-16 89.4 91 50.5
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 1.7e-16 89.4 86 52.3
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 1.7e-16 89.4 85 54.1
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 2.2e-16 89.0 62 62.9
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 2.9e-16 88.6 62 61.3
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 3.7e-16 88.2 93 49.5
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 3.7e-16 88.2 90 46.7
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 4.9e-16 87.8 82 52.4
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 6.4e-16 87.4 94 47.9
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 6.4e-16 87.4 93 48.4
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 6.4e-16 87.4 94 47.9
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 6.4e-16 87.4 96 43.8
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 6.4e-16 87.4 90 53.3
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 6.4e-16 87.4 65 58.5
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 6.4e-16 87.4 65 58.5
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 8.3e-16 87.0 93 48.4
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 8.3e-16 87.0 93 48.4
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 8.3e-16 87.0 93 48.4
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 1.4e-15 86.3 83 54.2
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.4e-15 86.3 95 44.2
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.9e-15 85.9 94 46.8
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 2.4e-15 85.5 87 48.3
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 2.4e-15 85.5 92 45.7
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 2.4e-15 85.5 82 50.0
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 4.1e-15 84.7 93 46.2
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 5.4e-15 84.3 93 46.2
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 5.4e-15 84.3 89 50.6
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 7.1e-15 84.0 63 60.3
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 9.2e-15 83.6 84 52.4
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 1.2e-14 83.2 94 50.0
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 2.7e-14 82.0 65 56.9
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 3.5e-14 81.6 96 45.8
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 1.0e-13 80.1 80 43.8
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 1.7e-13 79.3 82 46.3
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 1.7e-13 79.3 80 43.8
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.9e-12 75.9 51 58.8
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 1.9e-12 75.9 69 44.9
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 1.9e-12 75.9 65 53.8
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 3.3e-12 75.1 65 50.8
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 9.6e-12 73.6 88 39.8
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 9.6e-12 73.6 88 39.8
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 9.6e-12 73.6 89 46.1
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 9.6e-12 73.6 101 41.6
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.6e-11 72.8 90 38.9
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 3.6e-11 71.6 88 37.5
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 3.6e-11 71.6 88 37.5
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 6.2e-11 70.9 93 38.7
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 1.1e-10 70.1 82 43.9
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 1.1e-10 70.1 80 43.8
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.8e-10 69.3 92 38.0
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 2.4e-10 68.9 93 39.8
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 2.4e-10 68.9 90 37.8
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 3.1e-10 68.6 88 44.3
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 4.0e-10 68.2 95 42.1
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 5.2e-10 67.8 87 44.8
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 6.8e-10 67.4 93 38.7
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 1.2e-09 66.6 86 38.4
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 2.0e-09 65.9 89 36.0
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 2.6e-09 65.5 87 42.5
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 2.6e-09 65.5 90 40.0
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 9.9e-09 63.5 87 35.6
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 1.3e-08 63.2 102 35.3
Aa31LG2G14360 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.7e-08 62.8 71 38.0
Zm00001eb198610 Zea mays HOM05D005649 ORTHO05D006837 3.8e-08 61.6 100 40.0
Atru.chr3.1703 Acer truncatum HOM05D001848 ORTHO05D001295 3.2e-07 58.5 97 39.2
SEGI_28459 Sequoiadendron giganteum HOM05D005649 ORTHO05D006837 7.1e-07 57.4 85 41.2
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.2e-06 56.6 81 34.6
Potri.014G149900 Populus trichocarpa HOM05D001848 ORTHO05D001295 2.1e-06 55.8 92 38.0
Sabra14G0113300 Salix brachista HOM05D001848 ORTHO05D001295 4.6e-06 54.7 96 33.3


User provided reference genes

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