Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G140600 Glycine max HOM05D006981 ORTHO05D008719 7.9e-76 287.0 138 100.0
Glyma.16G194500 Glycine max HOM05D006981 ORTHO05D008719 7.4e-74 280.4 138 97.8
Phvul.004G118000 Phaseolus vulgaris HOM05D006981 ORTHO05D008719 1.3e-70 269.6 138 92.8
Lj2g0020265 Lotus japonicus HOM05D006981 ORTHO05D008719 1.0e-62 243.4 138 81.9
VMungo0464G1391 Vigna mungo HOM05D006981 ORTHO05D008719 9.4e-61 236.9 125 89.6
Ca_25351_v3 Cicer arietinum L. HOM05D000367 ORTHO05D001438 4.4e-58 228.0 138 78.3
arahy.Tifrunner.gnm1.ann1.8WRD93 Arachis hypogaea HOM05D006981 ORTHO05D008719 7.4e-58 227.3 145 79.3
arahy.Tifrunner.gnm1.ann1.T9EWQW Arachis hypogaea HOM05D006981 ORTHO05D008719 7.4e-58 227.3 144 79.2
Medtr6g471020 Medicago truncatula HOM05D006981 ORTHO05D008719 6.3e-57 224.2 138 75.4
Lalb_Chr19g0130931 Lupinus albus HOM05D006981 ORTHO05D008719 2.6e-50 202.2 114 79.8
CiPaw.03G105000 Carya illinoinensis HOM05D006981 ORTHO05D008719 1.8e-48 196.1 145 69.7
QL09p014567 Quercus lobata HOM05D006981 ORTHO05D008719 1.1e-45 186.8 142 65.5
Thecc.03G174800 Theobroma cacao HOM05D006981 ORTHO05D008719 2.7e-44 182.2 127 70.9
CAN.G28.6 Capsicum annuum HOM05D006981 ORTHO05D008719 6.1e-44 181.0 139 65.5
PGSC0003DMG400015647 Solanum tuberosum HOM05D006981 ORTHO05D008719 8.0e-44 180.6 127 68.5
Haze_13729 Corylus avellana HOM05D006981 ORTHO05D008719 1.8e-43 179.5 120 70.0
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 4.0e-43 178.3 122 71.3
Gohir.D08G111300 Gossypium hirsutum HOM05D006981 ORTHO05D008719 5.2e-43 177.9 125 72.0
Gorai.004G119200 Gossypium raimondii HOM05D006981 ORTHO05D008719 5.2e-43 177.9 125 72.0
PGR142G3060 Punica granatum HOM05D006981 ORTHO05D008719 5.2e-43 177.9 130 65.4
Eucgr.K00242 Eucalyptus grandis HOM05D006981 ORTHO05D008719 6.8e-43 177.6 124 68.5
Sc19g0001580 Simmondsia chinensis HOM05D006981 ORTHO05D008719 6.8e-43 177.6 125 67.2
Cfa008306 Carpinus fangiana HOM05D006981 ORTHO05D008719 8.8e-43 177.2 120 69.2
Nitab4.5_0000080g0060 Nicotiana tabacum HOM05D006981 ORTHO05D008719 1.2e-42 176.8 127 66.9
GSVIVG01010548001 Vitis vinifera HOM05D006981 ORTHO05D008719 1.5e-42 176.4 127 66.9
vmacro06697 Vaccinium macrocarpon HOM05D006981 ORTHO05D008719 2.0e-42 176.0 126 63.5
Sopen06g017220 Solanum pennellii HOM05D006981 ORTHO05D008719 3.4e-42 175.3 125 67.2
Hma1.2p1_0270F.1_g108180 Hydrangea macrophylla HOM05D006981 ORTHO05D008719 5.7e-42 174.5 118 67.8
FAN10G3446 Fragaria x ananassa HOM05D006981 ORTHO05D008719 7.5e-42 174.1 123 68.3
Manes.06G146000 Manihot esculenta HOM05D006981 ORTHO05D008719 7.5e-42 174.1 123 68.3
CsaV3_5G005720 Cucumis sativus L. HOM05D006981 ORTHO05D008719 9.8e-42 173.7 143 60.1
FAN03G1713 Fragaria x ananassa HOM05D006981 ORTHO05D008719 9.8e-42 173.7 123 68.3
FAN03G1998 Fragaria x ananassa HOM05D006981 ORTHO05D008719 9.8e-42 173.7 123 68.3
unitig_747.g21767 Utricularia gibba HOM05D006981 ORTHO05D008719 9.8e-42 173.7 129 60.5
Duzib205G0859 Durio zibethinus HOM05D006981 ORTHO05D008719 1.3e-41 173.3 128 68.0
MD07G1267100 Malus domestica HOM05D006981 ORTHO05D008719 1.3e-41 173.3 121 68.6
Sed0011448 Sechium edule HOM05D006981 ORTHO05D008719 1.3e-41 173.3 129 62.8
AUR62016001 Chenopodium quinoa HOM05D006981 ORTHO05D008719 1.7e-41 172.9 117 69.2
AUR62021209 Chenopodium quinoa HOM05D006981 ORTHO05D008719 1.7e-41 172.9 117 70.1
Ciclev10006231m.g Citrus clementina HOM05D006981 ORTHO05D008719 1.7e-41 172.9 120 68.3
ClCG01G005500 Citrullus lanatus HOM05D003170 ORTHO05D008719 2.2e-41 172.6 139 60.4
Cc02_g03150 Coffea canephora HOM05D006981 ORTHO05D008719 2.2e-41 172.6 135 60.7
Actinidia32871 Actinidia chinensis HOM05D006981 ORTHO05D008719 2.8e-41 172.2 150 56.7
TWI14G0356 Tripterygium wilfordii HOM05D006981 ORTHO05D008719 2.8e-41 172.2 117 68.4
MSTRG.27124 Avicennia marina HOM05D006981 ORTHO05D008719 3.7e-41 171.8 129 62.0
FvH4_7g29270 Fragaria vesca HOM05D006981 ORTHO05D008719 8.3e-41 170.6 123 67.5
Nn4g26525 Nelumbo nucifera HOM05D006981 ORTHO05D008719 8.3e-41 170.6 130 62.3
Nitab4.5_0019580g0020 Nicotiana tabacum HOM05D006981 ORTHO05D008719 8.3e-41 170.6 118 68.6
Hund11756 Selenicereus undatus HOM05D006981 ORTHO05D008719 8.3e-41 170.6 116 68.1
COL.COLO4_14290 Corchorus olitorius HOM05D006981 ORTHO05D008719 1.1e-40 170.2 128 65.6
Gohir.A08G100300 Gossypium hirsutum HOM05D006981 ORTHO05D008719 1.1e-40 170.2 130 66.9
FAN06G1994 Fragaria x ananassa HOM05D006981 ORTHO05D008719 1.4e-40 169.9 122 68.9
SGA_v2.0_scaffold2G01066 Striga asiatica HOM05D006981 ORTHO05D008719 1.4e-40 169.9 131 65.6
MELO3C005381.2 Cucumis melo HOM05D006981 ORTHO05D008719 2.4e-40 169.1 143 58.7
DCAR_009354 Daucus carota HOM05D006981 ORTHO05D008719 4.1e-40 168.3 124 62.1
ECA233G5478 Erigeron canadensis HOM05D006981 ORTHO05D008719 4.1e-40 168.3 141 57.4
Migut.F00354 Erythranthe guttata HOM05D006981 ORTHO05D008719 5.4e-40 167.9 136 61.8
HanXRQChr08g0209251 Helianthus annuus HOM05D006981 ORTHO05D008719 5.4e-40 167.9 125 62.4
Solyc06g051300.3 Solanum lycopersicum HOM05D006981 ORTHO05D008719 5.4e-40 167.9 118 68.6
CSS0044451 Camellia sinensis var. sinensis HOM05D006981 ORTHO05D008719 7.0e-40 167.5 121 66.1
FAN01G2034 Fragaria x ananassa HOM05D006981 ORTHO05D008719 2.0e-39 166.0 114 69.3
CANSAT21G0349 Cannabis sativa HOM05D006981 ORTHO05D008719 2.7e-39 165.6 124 62.9
Cpa.g.sc107.36 Carica papaya HOM05D006981 ORTHO05D008719 4.5e-39 164.9 118 66.1
Lj1C995G12 Lonicera japonica HOM05D006981 ORTHO05D008719 5.9e-39 164.5 133 61.7
Ah.13g068510 Amaranthus hybridus HOM05D006981 ORTHO05D008719 7.7e-39 164.1 120 64.2
RcHm_v2.0_Chr1g0377021 Rosa chinensis HOM05D006981 ORTHO05D008719 1.3e-38 163.3 115 68.7
Lsat_1_v5_gn_8_8340 Lactuca sativa HOM05D006981 ORTHO05D008719 1.7e-38 162.9 135 56.3
Prupe.2G292700 Prunus persica HOM05D006981 ORTHO05D008719 6.5e-38 161.0 119 64.7
Aqoxy7G00390 Aquilegia oxysepala HOM05D006981 ORTHO05D008719 1.5e-37 159.8 127 60.6
FAN06G2660 Fragaria x ananassa HOM05D006981 ORTHO05D008719 1.5e-37 159.8 122 67.2
Manes.09G002400 Manihot esculenta HOM05D006981 ORTHO05D008719 2.5e-37 159.1 128 63.3
Oeu056238.2 Olea europaea HOM05D006981 ORTHO05D008719 2.5e-37 159.1 120 64.2
MBI17_g21049_MAGBIO Magnolia biondii HOM05D006981 ORTHO05D008719 3.2e-37 158.7 126 57.9
Atru.chr1.479 Acer truncatum HOM05D006981 ORTHO05D008719 5.5e-37 157.9 119 63.9
EL10Ac3g05672 Beta vulgaris HOM05D006981 ORTHO05D008719 7.2e-37 157.5 118 63.6
Aa31LG3G8600 Aethionema arabicum HOM05D006981 ORTHO05D008719 1.6e-36 156.4 114 64.0
THA.LOC104825097 Tarenaya hassleriana HOM05D006981 ORTHO05D008719 2.1e-36 156.0 135 60.7
CDE08G1025 Ceratophyllum demersum HOM05D006981 ORTHO05D008719 2.7e-36 155.6 117 62.4
TAR375G0811 Trochodendron aralioides HOM05D006981 ORTHO05D008719 4.7e-36 154.8 118 64.4
PSO782G4575 Papaver somniferum HOM05D006981 ORTHO05D008719 1.0e-35 153.7 138 51.4
A10p09920 Brassica napus HOM05D006981 ORTHO05D008719 2.3e-35 152.5 115 67.0
Sp6g14470 Schrenkiella parvula HOM05D006981 ORTHO05D008719 2.3e-35 152.5 115 66.1
HPP92_028124 Vanilla planifolia HOM05D006981 ORTHO05D008719 2.3e-35 152.5 126 57.9
BcaC04g20601 Brassica carinata HOM05D006981 ORTHO05D008719 3.0e-35 152.1 115 66.1
BolC9t57050H Brassica oleracea HOM05D006981 ORTHO05D008719 3.0e-35 152.1 115 66.1
C09p41630 Brassica napus HOM05D006981 ORTHO05D008719 4.0e-35 151.8 115 66.1
BraA10t43072Z Brassica rapa HOM05D006981 ORTHO05D008719 5.2e-35 151.4 115 66.1
Potri.015G140200 Populus trichocarpa HOM05D006981 ORTHO05D008719 5.2e-35 151.4 136 61.0
Carub.0008s1231 Capsella rubella HOM05D006981 ORTHO05D008719 6.8e-35 151.0 114 65.8
PSO478G2189 Papaver somniferum HOM05D006981 ORTHO05D008719 6.8e-35 151.0 139 50.4
HPP92_020865 Vanilla planifolia HOM05D006981 ORTHO05D008719 1.2e-34 150.2 126 57.1
BcaB08g35575 Brassica carinata HOM05D006981 ORTHO05D008719 1.5e-34 149.8 115 65.2
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 2.6e-34 149.1 115 64.3
Thhalv10015042m.g Eutrema salsugineum HOM05D006981 ORTHO05D008719 3.4e-34 148.7 115 65.2
AL8G26600 Arabidopsis lyrata HOM05D006981 ORTHO05D008719 4.4e-34 148.3 114 64.9
AT5G52220 Arabidopsis thaliana HOM05D006981 ORTHO05D008719 4.4e-34 148.3 114 64.9
Sabra15G0150900 Salix brachista HOM05D006981 ORTHO05D008719 1.3e-33 146.7 130 61.5
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 1.3e-33 146.7 115 63.5
CARHR265140 Cardamine hirsuta HOM05D006981 ORTHO05D008719 3.7e-33 145.2 114 63.2
Zm00001eb309380 Zea mays HOM05D006981 ORTHO05D008719 4.9e-33 144.8 139 52.5
Psat1g030600 Pisum sativum HOM05D006981 ORTHO05D008719 2.7e-31 139.0 88 78.4
Pp3c14_5260 Physcomitrium patens HOM05D006981 ORTHO05D008719 3.3e-29 132.1 137 50.4
SHI13798 Sapria himalayana HOM05D006981 ORTHO05D008719 2.8e-28 129.0 148 45.9
Manes.14G129556 Manihot esculenta HOM05D006981 ORTHO05D008719 2.6e-26 122.5 80 70.0
AagrBONN_evm.TU.Sc2ySwM_369.83 Anthoceros agrestis HOM05D006981 ORTHO05D008719 1.3e-25 120.2 128 46.9
Mapoly0027s0013 Marchantia polymorpha HOM05D006981 ORTHO05D008719 1.3e-25 120.2 139 46.8
SMO141G0174 Selaginella moellendorffii HOM05D006981 ORTHO05D008719 1.1e-24 117.1 117 53.0
Peaxi162Scf00040g00323 Petunia axillaris HOM05D006981 ORTHO05D008719 5.4e-24 114.8 118 50.8
Actinidia34099 Actinidia chinensis HOM05D006981 ORTHO05D008719 6.6e-22 107.8 71 66.2
Psat1g030360 Pisum sativum HOM05D006981 ORTHO05D008719 7.5e-18 94.4 50 80.0
Hma1.2p1_0270F.1_g108170 Hydrangea macrophylla HOM05D006981 ORTHO05D008719 1.7e-17 93.2 57 66.7
PRCOL_00004746 Prasinoderma coloniale HOM05D006981 ORTHO05D008719 6.4e-17 91.3 131 38.2
Cre06.g281750 Chlamydomonas reinhardtii HOM05D006981 ORTHO05D008719 2.5e-13 79.3 118 42.4
SEGI_30853 Sequoiadendron giganteum HOM05D006981 ORTHO05D008719 4.3e-13 78.6 80 51.2
CBR_g4805 Chara braunii HOM05D006981 ORTHO05D008719 3.4e-10 68.9 113 37.2


User provided reference genes

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