Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 3.0e-54 214.9 107 100.0
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 9.9e-18 93.6 107 48.6
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 2.9e-17 92.0 107 47.7
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 6.4e-17 90.9 74 59.5
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 2.4e-16 89.0 72 59.7
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 5.5e-16 87.8 74 56.8
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 9.3e-16 87.0 72 58.3
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 9.3e-16 87.0 74 56.8
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 9.3e-16 87.0 74 56.8
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 9.3e-16 87.0 74 56.8
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 9.3e-16 87.0 74 56.8
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 9.3e-16 87.0 74 56.8
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 1.2e-15 86.7 70 58.6
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 1.2e-15 86.7 70 58.6
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 1.2e-15 86.7 72 56.9
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 1.2e-15 86.7 74 56.8
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 1.6e-15 86.3 75 58.7
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 2.1e-15 85.9 75 58.7
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 2.1e-15 85.9 72 58.3
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 3.5e-15 85.1 72 56.9
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 3.5e-15 85.1 72 56.9
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 4.6e-15 84.7 74 55.4
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 4.6e-15 84.7 75 57.3
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 6.0e-15 84.3 74 55.4
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 6.0e-15 84.3 69 59.4
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 7.9e-15 84.0 74 55.4
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 7.9e-15 84.0 71 57.7
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 7.9e-15 84.0 74 55.4
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 7.9e-15 84.0 74 56.8
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 7.9e-15 84.0 74 56.8
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 1.0e-14 83.6 107 43.0
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 1.3e-14 83.2 72 55.6
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.8e-14 82.8 75 57.3
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 2.3e-14 82.4 74 54.1
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 2.3e-14 82.4 68 58.8
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 3.0e-14 82.0 74 54.1
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 3.9e-14 81.6 80 51.2
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 3.9e-14 81.6 69 56.5
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 3.9e-14 81.6 72 55.6
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 3.9e-14 81.6 75 54.7
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 5.1e-14 81.3 74 54.1
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 5.1e-14 81.3 74 52.7
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 5.1e-14 81.3 74 52.7
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 6.7e-14 80.9 73 56.2
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 6.7e-14 80.9 68 57.4
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 6.7e-14 80.9 74 55.4
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 8.7e-14 80.5 52 71.2
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 1.1e-13 80.1 75 54.7
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 1.5e-13 79.7 74 51.4
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 1.9e-13 79.3 74 51.4
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 1.9e-13 79.3 74 52.7
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 3.3e-13 78.6 54 63.0
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 3.3e-13 78.6 71 52.1
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 3.3e-13 78.6 74 51.4
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 4.3e-13 78.2 75 52.0
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 4.3e-13 78.2 74 51.4
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 7.4e-13 77.4 75 54.7
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 7.4e-13 77.4 74 52.7
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 9.6e-13 77.0 73 50.7
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 9.6e-13 77.0 67 55.2
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 1.3e-12 76.6 66 54.5
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 1.3e-12 76.6 72 54.2
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 1.3e-12 76.6 74 51.4
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 1.6e-12 76.3 74 52.7
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 1.6e-12 76.3 53 67.9
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 2.1e-12 75.9 78 47.4
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 2.1e-12 75.9 78 47.4
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 2.1e-12 75.9 78 47.4
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 2.1e-12 75.9 48 66.7
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 2.8e-12 75.5 74 50.0
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 3.7e-12 75.1 78 47.4
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 3.7e-12 75.1 74 50.0
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 4.8e-12 74.7 66 53.0
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 4.8e-12 74.7 66 53.0
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 6.2e-12 74.3 61 55.7
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 6.2e-12 74.3 70 52.9
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 6.2e-12 74.3 62 56.5
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 8.2e-12 73.9 70 52.9
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 8.2e-12 73.9 66 51.5
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 1.1e-11 73.6 78 46.2
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.1e-11 73.6 60 58.3
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 1.4e-11 73.2 70 52.9
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.8e-11 72.8 73 49.3
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 1.8e-11 72.8 65 52.3
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 2.4e-11 72.4 60 55.0
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 3.1e-11 72.0 57 61.4
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 4.0e-11 71.6 63 52.4
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 4.0e-11 71.6 74 48.6
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 4.0e-11 71.6 74 48.6
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 5.3e-11 71.2 74 47.3
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 5.3e-11 71.2 107 43.9
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 6.9e-11 70.9 74 47.3
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 6.9e-11 70.9 62 53.2
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 6.9e-11 70.9 57 61.4
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 6.9e-11 70.9 70 51.4
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 6.9e-11 70.9 70 51.4
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 9.0e-11 70.5 63 50.8
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 9.0e-11 70.5 66 51.5
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 1.2e-10 70.1 60 53.3
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 1.2e-10 70.1 70 51.4
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 1.5e-10 69.7 63 50.8
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 1.5e-10 69.7 72 45.8
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 2.0e-10 69.3 62 53.2
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 2.0e-10 69.3 60 55.0
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 2.0e-10 69.3 47 68.1
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 2.0e-10 69.3 62 51.6
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 2.6e-10 68.9 68 50.0
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 2.6e-10 68.9 75 46.7
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 3.4e-10 68.6 74 50.0
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 3.4e-10 68.6 62 53.2
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 3.4e-10 68.6 62 51.6
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 4.5e-10 68.2 60 56.7
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 4.5e-10 68.2 60 56.7
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 5.8e-10 67.8 67 44.8
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 7.6e-10 67.4 107 38.3
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 7.6e-10 67.4 66 48.5
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 1.0e-09 67.0 64 51.6
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 1.0e-09 67.0 64 51.6
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 1.7e-09 66.2 73 49.3
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 1.7e-09 66.2 78 46.2
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.9e-09 65.5 66 47.0
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 4.9e-09 64.7 57 54.4
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 6.5e-09 64.3 60 55.0
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 6.5e-09 64.3 57 54.4
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 1.1e-08 63.5 59 50.8
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 1.9e-08 62.8 58 51.7
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 2.5e-08 62.4 62 48.4
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.5e-08 62.4 67 44.8
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 3.2e-08 62.0 39 71.8
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 1.2e-07 60.1 70 45.7
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.0e-06 55.5 64 43.8
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 3.9e-06 55.1 60 41.7


User provided reference genes

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