Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 5.6e-99 364.4 200 100.0
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 3.2e-78 295.4 207 82.6
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 5.5e-78 294.7 207 81.6
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 1.2e-77 293.5 207 80.7
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 2.9e-63 245.7 209 74.2
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 5.3e-57 224.9 203 70.4
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 5.9e-56 221.5 207 69.1
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 1.2e-53 213.8 207 65.7
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 5.2e-52 208.4 207 63.8
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 6.8e-52 208.0 209 65.6
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 2.2e-50 203.0 203 66.0
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 4.5e-48 195.3 208 61.5
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 5.9e-48 194.9 207 61.4
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 1.7e-47 193.4 207 61.4
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 6.5e-47 191.4 208 60.1
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 6.5e-47 191.4 207 60.9
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 1.5e-46 190.3 207 61.8
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 1.9e-46 189.9 202 62.9
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 3.3e-46 189.1 207 59.9
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 5.5e-46 188.3 207 59.4
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 5.5e-46 188.3 208 60.6
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 1.2e-45 187.2 204 63.7
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 4.7e-45 185.3 207 53.6
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 1.8e-44 183.3 207 58.5
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 6.8e-44 181.4 208 60.6
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 6.8e-44 181.4 208 60.6
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 1.2e-43 180.6 203 60.1
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 1.5e-43 180.3 207 57.5
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 4.9e-42 175.3 208 58.2
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 1.1e-41 174.1 208 56.2
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 1.8e-41 173.3 206 57.3
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 2.4e-41 172.9 205 59.0
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 5.4e-41 171.8 194 58.8
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 5.4e-41 171.8 194 58.8
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 7.0e-41 171.4 196 58.7
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 7.0e-41 171.4 207 59.9
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 2.0e-40 169.9 198 58.6
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.0e-40 169.9 194 58.2
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 3.5e-40 169.1 205 55.6
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 3.5e-40 169.1 200 59.5
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.5e-40 168.7 200 59.5
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 1.7e-39 166.8 196 53.6
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 2.9e-39 166.0 207 55.6
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.9e-39 166.0 209 57.4
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 3.8e-39 165.6 209 56.9
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.5e-38 163.7 200 58.5
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 1.5e-38 163.7 205 56.1
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 1.9e-38 163.3 208 55.3
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.9e-38 163.3 205 56.6
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 2.5e-38 162.9 208 50.5
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 3.3e-38 162.5 207 56.0
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 4.3e-38 162.2 200 58.5
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 4.3e-38 162.2 205 55.1
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 1.2e-37 160.6 207 54.6
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 1.6e-37 160.2 207 54.1
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 2.8e-37 159.5 196 57.7
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 2.8e-37 159.5 201 49.8
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 2.8e-37 159.5 212 51.4
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 3.6e-37 159.1 197 58.9
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 6.1e-37 158.3 205 54.6
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 8.0e-37 157.9 208 54.3
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 8.0e-37 157.9 197 57.9
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 8.0e-37 157.9 199 54.8
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.3e-36 156.4 207 56.5
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 2.3e-36 156.4 205 54.1
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 4.0e-36 155.6 196 50.0
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 5.2e-36 155.2 208 52.4
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 6.8e-36 154.8 204 49.5
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 6.8e-36 154.8 205 54.1
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 8.9e-36 154.5 208 53.4
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.2e-35 154.1 205 53.7
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.2e-35 154.1 205 53.7
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 1.2e-35 154.1 204 49.5
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.5e-35 153.7 198 58.1
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 1.5e-35 153.7 205 55.1
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.5e-35 153.7 205 54.1
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.6e-35 152.9 197 57.9
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 3.4e-35 152.5 208 53.4
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 5.8e-35 151.8 196 57.1
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 2.9e-34 149.4 208 51.4
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.9e-34 149.4 208 51.9
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 3.7e-34 149.1 173 61.8
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 4.9e-34 148.7 204 50.5
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 4.9e-34 148.7 204 50.5
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 8.3e-34 147.9 197 55.8
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 1.8e-33 146.7 208 51.4
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.8e-33 146.7 208 51.4
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 1.8e-33 146.7 196 54.6
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.4e-33 146.4 208 51.4
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 2.4e-33 146.4 208 52.4
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 3.2e-33 146.0 208 51.0
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 3.2e-33 146.0 206 52.9
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 5.4e-33 145.2 207 52.2
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 7.0e-33 144.8 254 40.6
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.2e-32 144.1 208 51.0
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 1.2e-32 144.1 198 50.5
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.6e-32 143.7 201 49.8
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 2.0e-32 143.3 180 54.4
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 2.0e-32 143.3 196 54.1
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 4.6e-32 142.1 206 53.4
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 6.0e-32 141.7 197 55.3
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 1.0e-31 141.0 185 49.2
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 2.3e-31 139.8 201 53.7
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 3.0e-31 139.4 140 55.7
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 8.6e-31 137.9 196 52.6
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 8.6e-31 137.9 205 53.7
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.1e-30 137.5 203 46.8
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 3.3e-30 136.0 195 55.9
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 3.3e-30 136.0 201 47.8
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 4.3e-30 135.6 201 46.8
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 4.3e-30 135.6 181 53.0
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 2.8e-29 132.9 202 48.5
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 3.6e-29 132.5 209 47.8
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 6.2e-29 131.7 201 46.3
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 8.0e-29 131.3 204 45.6
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 8.0e-29 131.3 190 52.1
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.4e-28 130.6 200 46.5
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 1.4e-28 130.6 189 57.1
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 1.4e-28 130.6 199 49.7
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 1.8e-28 130.2 207 52.2
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 3.1e-28 129.4 200 47.5
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 6.8e-28 128.3 200 45.0
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 6.8e-28 128.3 176 53.4
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.5e-27 127.1 201 45.8
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 1.5e-27 127.1 192 51.0
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 3.4e-27 125.9 195 52.8
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 4.4e-27 125.6 192 44.8
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 9.8e-27 124.4 197 45.7
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 1.3e-26 124.0 203 45.3
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 1.7e-26 123.6 192 44.3
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 2.2e-26 123.2 199 45.7
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 4.9e-26 122.1 184 44.0
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 4.9e-26 122.1 188 44.1
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 4.9e-26 122.1 188 47.3
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 6.4e-26 121.7 179 48.6
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 8.3e-26 121.3 183 45.9
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.4e-25 120.6 179 48.6
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 1.9e-25 120.2 194 43.8
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 1.9e-25 120.2 194 50.5
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 5.4e-25 118.6 199 44.2
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.2e-24 117.5 201 44.8
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 2.7e-24 116.3 182 45.6
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 6.0e-24 115.2 224 41.5
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 6.0e-24 115.2 199 45.7
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 7.8e-24 114.8 188 46.8
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 1.7e-23 113.6 160 56.2
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.1e-22 110.9 190 44.2
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 1.1e-22 110.9 212 42.5
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 1.5e-22 110.5 191 42.4
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 3.3e-22 109.4 202 48.0
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 5.6e-22 108.6 199 45.7
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 6.2e-21 105.1 208 46.2
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 1.1e-20 104.4 200 46.5
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 1.1e-20 104.4 188 48.4
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.1e-20 104.4 208 42.3
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 1.1e-20 104.4 185 41.6
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 5.2e-20 102.1 100 61.0
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 6.8e-20 101.7 200 45.5
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 1.2e-19 100.9 179 49.7
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 1.5e-19 100.5 182 51.6
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 2.0e-19 100.1 85 83.5
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 3.4e-19 99.4 200 45.5
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 5.8e-19 98.6 205 41.5
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 9.9e-19 97.8 210 43.3
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 2.9e-18 96.3 127 59.8
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 6.4e-18 95.1 107 52.3
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 6.4e-18 95.1 198 44.9
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 4.1e-17 92.4 99 61.6
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 4.1e-17 92.4 99 61.6
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.6e-16 90.5 186 41.9
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 3.5e-16 89.4 241 41.1
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 4.6e-16 89.0 208 44.7
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 1.5e-14 84.0 126 40.5
CARHR265540 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.6e-13 80.5 95 54.7
VMungo0251G0932 Vigna mungo HOM05D002831 ORTHO05D004341 1.8e-12 77.0 164 42.1
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 2.4e-12 76.6 202 41.1
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 5.2e-12 75.5 199 40.7
Carub.0007s1527 Capsella rubella HOM05D002831 ORTHO05D004341 6.8e-12 75.1 77 63.6
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 1.5e-11 73.9 190 45.3
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 6.4e-10 68.6 207 40.1
Os06g0106900 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 1.0e-07 61.2 97 55.7
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 2.3e-07 60.1 189 40.2
Lj8C18T8 Lonicera japonica HOM05D002831 ORTHO05D004341 6.6e-07 58.5 40 87.5
Nn1g01625 Nelumbo nucifera HOM05D002831 ORTHO05D004341 3.3e-06 56.2 40 87.5


User provided reference genes

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