Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 2.6e-186 655.2 324 100.0
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 2.5e-133 479.2 286 80.1
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.7e-132 476.5 285 79.3
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 8.2e-132 474.2 305 77.4
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 9.7e-125 450.7 294 76.5
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 1.8e-123 446.4 291 75.9
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 2.9e-121 439.1 291 75.3
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 1.4e-120 436.8 294 74.5
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 1.9e-120 436.4 291 73.9
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 1.9e-120 436.4 291 73.9
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 7.2e-120 434.5 291 73.5
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 2.3e-118 429.5 278 75.2
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 5.2e-118 428.3 291 72.2
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 9.7e-117 424.1 283 73.5
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 6.3e-116 421.4 303 67.7
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 2.5e-112 409.5 278 73.0
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 3.1e-99 365.9 303 61.1
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 4.1e-99 365.5 268 69.0
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 1.2e-98 364.0 286 65.7
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.2e-98 364.0 294 60.9
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 2.0e-98 363.2 287 63.8
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 4.5e-98 362.1 284 64.1
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 1.0e-97 360.9 309 61.5
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 1.3e-97 360.5 290 62.1
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 8.6e-97 357.8 304 60.9
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 8.6e-97 357.8 296 59.8
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 1.5e-96 357.1 278 64.4
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 2.5e-96 356.3 281 63.0
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 3.3e-96 355.9 284 62.3
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 3.3e-96 355.9 253 66.0
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 4.2e-96 355.5 287 62.4
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 5.5e-96 355.1 250 68.0
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 1.6e-95 353.6 296 59.8
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 2.1e-95 353.2 310 58.1
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 6.1e-95 351.7 297 59.6
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 8.0e-95 351.3 317 58.4
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 1.0e-94 350.9 301 58.1
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 1.8e-94 350.1 275 62.5
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 2.3e-94 349.7 304 59.9
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 5.2e-94 348.6 253 66.8
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 5.2e-94 348.6 282 62.8
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 6.8e-94 348.2 305 60.0
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 6.8e-94 348.2 296 58.4
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 8.9e-94 347.8 272 63.6
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.2e-93 347.4 296 58.8
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 2.0e-93 346.7 285 60.7
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 2.0e-93 346.7 251 64.5
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 2.6e-93 346.3 270 62.6
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 3.4e-93 345.9 291 59.8
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 5.7e-93 345.1 251 66.9
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 7.5e-93 344.7 297 58.9
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 2.2e-92 343.2 328 55.8
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 2.2e-92 343.2 256 64.5
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.8e-92 342.8 273 62.3
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.8e-92 342.8 283 61.1
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.1e-91 340.9 302 57.0
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.4e-91 340.5 299 58.5
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.4e-91 340.5 299 58.5
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 2.4e-91 339.7 302 56.0
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 4.1e-91 339.0 289 57.1
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 5.4e-91 338.6 252 65.9
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 5.4e-91 338.6 304 57.2
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 5.4e-91 338.6 273 61.9
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 1.2e-90 337.4 358 53.1
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 7.8e-90 334.7 248 66.5
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 2.3e-89 333.2 248 65.3
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 2.3e-89 333.2 264 63.3
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 2.9e-89 332.8 237 66.7
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 5.0e-89 332.0 264 62.9
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 6.6e-89 331.6 288 58.7
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 8.6e-89 331.3 280 63.2
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.1e-88 330.9 281 59.1
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 1.5e-88 330.5 264 62.9
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 4.3e-88 328.9 298 58.7
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 4.3e-88 328.9 288 57.6
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 4.3e-88 328.9 248 64.9
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.3e-88 328.9 318 54.7
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.6e-88 328.6 318 54.4
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 7.3e-88 328.2 250 63.2
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 9.5e-88 327.8 287 57.8
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.6e-87 327.0 314 56.4
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 2.1e-87 326.6 252 61.9
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 2.8e-87 326.2 308 54.9
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 3.6e-87 325.9 250 61.6
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 4.7e-87 325.5 248 64.9
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 4.7e-87 325.5 314 56.1
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 1.0e-86 324.3 274 58.0
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 1.4e-86 323.9 249 64.3
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 3.1e-86 322.8 287 57.1
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 6.8e-86 321.6 286 59.8
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 8.9e-86 321.2 277 59.6
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.2e-85 320.9 279 58.4
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 4.4e-85 318.9 268 61.6
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 5.8e-85 318.5 308 55.5
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 7.5e-85 318.2 295 56.9
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 7.5e-85 318.2 339 53.1
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 1.7e-84 317.0 305 55.4
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 2.2e-84 316.6 363 49.6
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 3.7e-84 315.8 281 56.9
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 4.9e-84 315.5 301 54.8
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 4.1e-83 312.4 301 54.5
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 4.1e-83 312.4 301 54.5
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 9.2e-83 311.2 251 58.6
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 2.7e-82 309.7 283 57.6
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.3e-81 306.6 304 54.3
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 3.3e-80 302.8 353 49.9
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 7.3e-80 301.6 306 55.6
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 9.5e-80 301.2 217 66.8
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 1.2e-79 300.8 197 73.1
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 2.8e-79 299.7 271 57.2
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.4e-78 297.4 252 58.7
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 3.1e-78 296.2 230 63.0
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 4.0e-78 295.8 304 54.3
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 4.4e-77 292.4 354 46.0
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 6.4e-76 288.5 287 51.6
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 9.5e-72 274.6 241 55.6
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 3.6e-71 272.7 267 52.4
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.6e-66 257.3 277 49.1
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 2.1e-66 256.9 237 57.0
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 2.7e-66 256.5 236 54.2
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.6e-63 247.3 167 71.3
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 8.1e-63 245.0 231 52.8
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.0e-62 242.7 213 55.9
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 1.2e-61 241.1 255 47.5
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 1.2e-61 241.1 255 47.5
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.6e-56 222.2 217 52.5
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 3.1e-54 216.5 161 64.6
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 5.3e-54 215.7 216 53.2
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 3.8e-52 209.5 202 55.4
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 6.4e-52 208.8 161 62.7
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 8.7e-49 198.4 165 61.2
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 1.1e-48 198.0 270 38.1
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.5e-48 197.6 196 52.0
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.6e-47 194.1 145 63.4
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 1.4e-46 191.0 259 39.8
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.1e-46 189.9 217 46.5
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 1.7e-44 184.1 168 58.9
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 3.5e-42 176.4 192 50.5
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 1.2e-37 161.4 120 67.5
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 5.8e-37 159.1 133 57.9
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 6.5e-36 155.6 305 35.7
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 9.3e-35 151.8 143 60.1
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 7.6e-29 132.1 106 60.4
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 4.2e-27 126.3 137 48.9
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 9.0e-22 108.6 116 50.9
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 5.9e-21 105.9 86 64.0
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.4e-17 94.7 79 62.0
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.8e-17 94.4 279 29.7
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 7.4e-16 89.0 73 53.4
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 1.4e-14 84.7 107 43.0
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.8e-14 84.3 77 55.8
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 3.4e-13 80.1 72 52.8
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 4.5e-13 79.7 83 53.0
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.5e-11 73.9 49 71.4
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 2.7e-10 70.5 39 84.6
VMungo1215G0982 Vigna mungo HOM05D003460 ORTHO05D004277 6.3e-07 59.3 32 78.1


User provided reference genes

Program Settings