Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G130100 Glycine max HOM05D000621 ORTHO05D000421 1.0e-90 336.7 162 100.0
Glyma.16G177700 Glycine max HOM05D001243 ORTHO05D000843 2.3e-58 229.2 169 69.2
Glyma.02G064600 Glycine max HOM05D000621 ORTHO05D000421 3.2e-36 155.6 196 46.4
Medtr4g026550 Medicago truncatula HOM05D001243 ORTHO05D000843 1.2e-30 137.1 185 43.8
Medtr4g023710 Medicago truncatula HOM05D001243 ORTHO05D000843 5.9e-30 134.8 178 43.3
Medtr7g017280 Medicago truncatula HOM05D001243 ORTHO05D000843 7.2e-28 127.9 189 38.6
Medtr4g024780 Medicago truncatula HOM05D001243 ORTHO05D000843 4.0e-26 122.1 187 38.5
Medtr4g023670 Medicago truncatula HOM05D001243 ORTHO05D000843 1.4e-23 113.6 158 42.4
Medtr4g024810 Medicago truncatula HOM05D001243 ORTHO05D000843 1.4e-23 113.6 159 42.8
Medtr4g024680 Medicago truncatula HOM05D001243 ORTHO05D000843 2.7e-22 109.4 188 36.2
Glyma.20G095500 Glycine max HOM05D000621 ORTHO05D000421 1.2e-17 94.0 119 44.5
Lalb_Chr06g0167411 Lupinus albus HOM05D000621 ORTHO05D000421 2.6e-17 92.8 104 46.2
Lalb_Chr21g0310171 Lupinus albus HOM05D000621 ORTHO05D000421 1.7e-16 90.1 104 43.3
VMungo0720G2260 Vigna mungo HOM05D000621 ORTHO05D000421 4.1e-15 85.5 122 40.2
Ca_10185_v3 Cicer arietinum L. HOM05D000621 ORTHO05D000421 9.1e-15 84.3 104 43.3
TPR.G2597 Trifolium pratense HOM05D000621 ORTHO05D000421 9.1e-15 84.3 119 37.0
arahy.Tifrunner.gnm1.ann1.492HD2 Arachis hypogaea HOM05D000621 ORTHO05D000421 1.6e-14 83.6 120 40.0
arahy.Tifrunner.gnm1.ann1.CG4MLB Arachis hypogaea HOM05D000621 ORTHO05D000421 1.6e-14 83.6 120 40.0
TWI56G1461 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 2.7e-14 82.8 122 43.4
Medtr4g104300 Medicago truncatula HOM05D001243 ORTHO05D000843 3.5e-14 82.4 136 34.6
Phvul.007G202900 Phaseolus vulgaris HOM05D000621 ORTHO05D000421 3.5e-14 82.4 122 38.5
Psat6g153280 Pisum sativum HOM05D000621 ORTHO05D000421 3.5e-14 82.4 124 36.3
Psat6g154280 Pisum sativum HOM05D000621 ORTHO05D000421 3.5e-14 82.4 124 37.1
Lj5g0023639 Lotus japonicus HOM05D000621 ORTHO05D000421 1.0e-13 80.9 118 38.1
Lalb_Chr02g0147681 Lupinus albus HOM05D000621 ORTHO05D000421 1.7e-13 80.1 124 38.7
Glyma.09G141900 Glycine max HOM05D000621 ORTHO05D000421 4.2e-12 75.5 79 57.0
TWI12G0894 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 5.5e-12 75.1 122 40.2
CANSAT54G1464 Cannabis sativa HOM05D000621 ORTHO05D000421 2.7e-11 72.8 124 39.5
Lj2g0013379 Lotus japonicus HOM05D000621 ORTHO05D000421 5.2e-10 68.6 115 35.7
Psat6g154320 Pisum sativum HOM05D000621 ORTHO05D000421 6.8e-10 68.2 104 34.6
Glyma.09G130200 Glycine max HOM05D001243 ORTHO05D000843 2.6e-09 66.2 46 69.6
Cc02_g35280 Coffea canephora HOM05D000621 ORTHO05D000421 3.4e-09 65.9 95 35.8
Manes.09G178400 Manihot esculenta HOM05D000621 ORTHO05D000421 5.7e-09 65.1 127 31.5
SHI18046 Sapria himalayana HOM05D000621 ORTHO05D000421 5.7e-09 65.1 119 31.1
AUR62024602 Chenopodium quinoa HOM05D000621 ORTHO05D000421 7.5e-09 64.7 115 35.7
COL.COLO4_05529 Corchorus olitorius HOM05D000621 ORTHO05D000421 7.5e-09 64.7 135 32.6
PGR083G2575 Punica granatum HOM05D000621 ORTHO05D000421 9.8e-09 64.3 138 31.2
Sabra13G0005800 Salix brachista HOM05D000621 ORTHO05D000421 9.8e-09 64.3 119 33.6
Medtr4g024830 Medicago truncatula HOM05D001243 ORTHO05D000843 1.3e-08 63.9 95 37.9
Phvul.004G117700 Phaseolus vulgaris HOM05D001243 ORTHO05D000843 1.3e-08 63.9 61 50.8
Thecc.05G325400 Theobroma cacao HOM05D000621 ORTHO05D000421 1.3e-08 63.9 121 34.7
Psat6g155040 Pisum sativum HOM05D000621 ORTHO05D000421 1.7e-08 63.5 88 36.4
PGR083G2389 Punica granatum HOM05D000621 ORTHO05D000421 1.7e-08 63.5 138 29.0
THA.LOC104823716 Tarenaya hassleriana HOM05D000621 ORTHO05D000421 1.7e-08 63.5 94 37.2
Ciclev10001744m.g Citrus clementina HOM05D000621 ORTHO05D000421 2.2e-08 63.2 167 31.1
VMungo0464G1694 Vigna mungo HOM05D001243 ORTHO05D000843 2.2e-08 63.2 42 66.7
Atru.chr2.240 Acer truncatum HOM05D000621 ORTHO05D000421 2.8e-08 62.8 122 32.8
Glyma.10G135266 Glycine max HOM05D001243 ORTHO05D000843 2.8e-08 62.8 45 62.2
Glyma.10G135600 Glycine max HOM05D001243 ORTHO05D000843 2.8e-08 62.8 45 62.2
Sabra05G0008200 Salix brachista HOM05D000621 ORTHO05D000421 2.8e-08 62.8 119 31.9
Sabra05G0019500 Salix brachista HOM05D000621 ORTHO05D000421 2.8e-08 62.8 119 31.9
AUR62011757 Chenopodium quinoa HOM05D000621 ORTHO05D000421 3.7e-08 62.4 115 34.8
Psat6g155000 Pisum sativum HOM05D000621 ORTHO05D000421 3.7e-08 62.4 99 33.3
Potri.013G006900 Populus trichocarpa HOM05D000621 ORTHO05D000421 4.9e-08 62.0 119 32.8
Duzib177G0212 Durio zibethinus HOM05D000621 ORTHO05D000421 6.3e-08 61.6 122 34.4
Glyma.09G140200 Glycine max HOM05D001243 ORTHO05D000843 8.3e-08 61.2 67 49.3
Glyma.09G141100 Glycine max HOM05D001243 ORTHO05D000843 8.3e-08 61.2 60 51.7
Glyma.09G141200 Glycine max HOM05D001243 ORTHO05D000843 8.3e-08 61.2 60 51.7
Glyma.09G141300 Glycine max HOM05D001243 ORTHO05D000843 8.3e-08 61.2 60 51.7
Glyma.09G141400 Glycine max HOM05D001243 ORTHO05D000843 8.3e-08 61.2 60 51.7
Glyma.09G141600 Glycine max HOM05D001243 ORTHO05D000843 8.3e-08 61.2 60 51.7
Glyma.09G141700 Glycine max HOM05D001243 ORTHO05D000843 8.3e-08 61.2 60 51.7
Psat6g154880 Pisum sativum HOM05D000621 ORTHO05D000421 8.3e-08 61.2 104 32.7
EL10As5g23608 Beta vulgaris HOM05D000621 ORTHO05D000421 1.1e-07 60.8 115 34.8
Glyma.09G139800 Glycine max HOM05D001243 ORTHO05D000843 1.1e-07 60.8 52 55.8
Glyma.09G139700 Glycine max HOM05D001243 ORTHO05D000843 1.4e-07 60.5 53 52.8
VMungo0464G2053 Vigna mungo HOM05D001243 ORTHO05D000843 1.4e-07 60.5 55 52.7
Glyma.08G256701 Glycine max HOM05D001243 ORTHO05D212299 1.8e-07 60.1 77 50.6
VMungo0464G0223 Vigna mungo HOM05D001243 ORTHO05D000843 1.8e-07 60.1 47 63.8
MD01G1173400 Malus domestica HOM05D000621 ORTHO05D000421 2.4e-07 59.7 100 35.0
Psat6g154800 Pisum sativum HOM05D000621 ORTHO05D000421 2.4e-07 59.7 71 39.4
FAN06G4196 Fragaria x ananassa HOM05D000621 ORTHO05D000421 3.1e-07 59.3 96 35.4
Glyma.09G139100 Glycine max HOM05D001243 ORTHO05D000843 3.1e-07 59.3 46 58.7
Glyma.10G135500 Glycine max HOM05D001243 ORTHO05D000843 3.1e-07 59.3 45 60.0
Gohir.D13G182700 Gossypium hirsutum HOM05D000621 ORTHO05D000421 3.1e-07 59.3 122 33.6
Gorai.013G208100 Gossypium raimondii HOM05D000621 ORTHO05D000421 3.1e-07 59.3 122 33.6
Psat6g154680 Pisum sativum HOM05D000621 ORTHO05D000421 3.1e-07 59.3 76 38.2
Cpa.g.sc48.181 Carica papaya HOM05D000621 ORTHO05D000421 4.1e-07 58.9 122 32.0
COL.COLO4_07367 Corchorus olitorius HOM05D000621 ORTHO05D000421 4.1e-07 58.9 126 33.3
FvH4_7g26480 Fragaria vesca HOM05D000621 ORTHO05D000421 4.1e-07 58.9 96 35.4
Psat6g154520 Pisum sativum HOM05D000621 ORTHO05D000421 4.1e-07 58.9 71 39.4
Hund09661 Selenicereus undatus HOM05D000621 ORTHO05D000421 4.1e-07 58.9 116 37.1
VMungo0251G2380 Vigna mungo HOM05D001243 ORTHO05D000843 4.1e-07 58.9 43 58.1
VMungo0251G3494 Vigna mungo HOM05D001243 ORTHO05D000843 4.1e-07 58.9 43 58.1
Gohir.A13G176300 Gossypium hirsutum HOM05D000621 ORTHO05D000421 5.4e-07 58.5 121 33.1
Phvul.004G118300 Phaseolus vulgaris HOM05D001243 ORTHO05D000843 5.4e-07 58.5 46 58.7
BcaC06g33876 Brassica carinata HOM05D000051 ORTHO05D000015 7.0e-07 58.2 41 65.9
BolC7t44116H Brassica oleracea HOM05D000051 ORTHO05D000015 7.0e-07 58.2 41 65.9
CARHR009280 Cardamine hirsuta HOM05D000621 ORTHO05D000421 7.0e-07 58.2 108 35.2
FAN26G2321 Fragaria x ananassa HOM05D000051 ORTHO05D000015 7.0e-07 58.2 46 54.3
Lj2g0023692 Lotus japonicus HOM05D000621 ORTHO05D000421 7.0e-07 58.2 66 42.4
Lalb_Chr01g0009221 Lupinus albus HOM05D001243 ORTHO05D000843 7.0e-07 58.2 42 61.9
Psat6g154600 Pisum sativum HOM05D000621 ORTHO05D000421 7.0e-07 58.2 71 39.4
RcHm_v2.0_Chr5g0028391 Rosa chinensis HOM05D000051 ORTHO05D000015 7.0e-07 58.2 39 64.1
RcHm_v2.0_Chr7g0197871 Rosa chinensis HOM05D000051 ORTHO05D000015 7.0e-07 58.2 42 61.9
FAN01G0735 Fragaria x ananassa HOM05D000621 ORTHO05D000421 9.2e-07 57.8 86 34.9
Phvul.004G106500 Phaseolus vulgaris HOM05D001243 ORTHO05D000843 9.2e-07 57.8 47 61.7
BcaC07g41898 Brassica carinata HOM05D000621 ORTHO05D000421 1.2e-06 57.4 95 33.7
Glyma.10G136700 Glycine max HOM05D001243 ORTHO05D000843 1.2e-06 57.4 45 55.6
Medtr6g018560 Medicago truncatula HOM05D001243 ORTHO05D000843 1.2e-06 57.4 48 58.3
Medtr6g018570 Medicago truncatula HOM05D001243 ORTHO05D000843 1.2e-06 57.4 48 58.3
Medtr6g025270 Medicago truncatula HOM05D001243 ORTHO05D000843 1.2e-06 57.4 48 58.3
RcHm_v2.0_Chr5g0030601 Rosa chinensis HOM05D000051 ORTHO05D000015 1.2e-06 57.4 40 67.5
CANSAT80G1127 Cannabis sativa HOM05D000051 ORTHO05D010453 1.6e-06 57.0 43 53.5
Gohir.A03G017880 Gossypium hirsutum HOM05D000621 ORTHO05D000421 1.6e-06 57.0 97 27.8
Gorai.003G161300 Gossypium raimondii HOM05D000621 ORTHO05D000421 1.6e-06 57.0 102 28.4
Medtr8g066650 Medicago truncatula HOM05D001243 ORTHO05D000843 1.6e-06 57.0 108 33.3
Nitab4.5_0001770g0180 Nicotiana tabacum HOM05D001396 ORTHO05D000493 1.6e-06 57.0 89 42.7
VMungo0464G1561 Vigna mungo HOM05D001243 ORTHO05D000843 1.6e-06 57.0 46 56.5
CSS0005231 Camellia sinensis var. sinensis HOM05D001396 ORTHO05D000493 2.0e-06 56.6 47 55.3
FAN13G3121 Fragaria x ananassa HOM05D003102 ORTHO05D000015 2.0e-06 56.6 47 55.3
Gorai.013G162600 Gossypium raimondii HOM05D000051 ORTHO05D000015 2.0e-06 56.6 55 45.5
Medtr5g060570 Medicago truncatula HOM05D001243 ORTHO05D000843 2.0e-06 56.6 42 61.9
Carub.0001s0866 Capsella rubella HOM05D000621 ORTHO05D000421 2.7e-06 56.2 123 35.0
Lj2g0015027 Lotus japonicus HOM05D001243 ORTHO05D000843 2.7e-06 56.2 42 59.5
Prupe.4G158700 Prunus persica HOM05D000051 ORTHO05D000015 2.7e-06 56.2 41 63.4
TPR.G16632 Trifolium pratense HOM05D001243 ORTHO05D000843 2.7e-06 56.2 55 49.1
Cpa.g.sc1313.1 Carica papaya HOM05D000051 ORTHO05D000015 3.5e-06 55.8 38 60.5
Eucgr.H04076 Eucalyptus grandis HOM05D000621 ORTHO05D000421 3.5e-06 55.8 103 31.1
Gohir.D03G153616 Gossypium hirsutum HOM05D000621 ORTHO05D000421 3.5e-06 55.8 102 28.4
Medtr3g036330 Medicago truncatula HOM05D001243 ORTHO05D000843 3.5e-06 55.8 45 57.8
Oeu034299.1 Olea europaea HOM05D000051 ORTHO05D000015 3.5e-06 55.8 41 63.4
Prupe.4G160800 Prunus persica HOM05D000051 ORTHO05D000015 3.5e-06 55.8 43 58.1
CANSAT80G0656 Cannabis sativa HOM05D000051 ORTHO05D010453 4.5e-06 55.5 47 51.1
Ca_16018_v3 Cicer arietinum L. HOM05D001243 ORTHO05D000843 4.5e-06 55.5 43 53.5
MD11G1266000 Malus domestica HOM05D000051 ORTHO05D000015 4.5e-06 55.5 41 61.0
Medtr6g018660 Medicago truncatula HOM05D001243 ORTHO05D000843 4.5e-06 55.5 41 63.4
Medtr6g025160 Medicago truncatula HOM05D001243 ORTHO05D000843 4.5e-06 55.5 48 56.2
Aqoxy3G03030 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 5.9e-06 55.1 47 44.7
C07p35990 Brassica napus HOM05D000051 ORTHO05D000015 5.9e-06 55.1 41 63.4
FAN11G1423 Fragaria x ananassa HOM05D000051 ORTHO05D008292 5.9e-06 55.1 35 68.6
FAN19G2798 Fragaria x ananassa HOM05D000051 ORTHO05D010714 5.9e-06 55.1 39 61.5
FAN28G2657 Fragaria x ananassa HOM05D000051 ORTHO05D000015 5.9e-06 55.1 39 61.5
Lj3A834G67 Lonicera japonica HOM05D000621 ORTHO05D000421 5.9e-06 55.1 104 29.8
Lalb_Chr03g0034441 Lupinus albus HOM05D001243 ORTHO05D000843 5.9e-06 55.1 42 61.9
Medtr3g019180 Medicago truncatula HOM05D001243 ORTHO05D000843 5.9e-06 55.1 45 55.6
Medtr6g092430 Medicago truncatula HOM05D001243 ORTHO05D000843 5.9e-06 55.1 50 52.0
TPR.G6356 Trifolium pratense HOM05D001243 ORTHO05D000843 5.9e-06 55.1 52 44.2
Aqoxy1G01747 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 7.7e-06 54.7 45 48.9
CANSAT80G1775 Cannabis sativa HOM05D000051 ORTHO05D010453 7.7e-06 54.7 40 60.0
Eucgr.E03436 Eucalyptus grandis HOM05D001396 ORTHO05D000493 7.7e-06 54.7 48 52.1
FAN14G1913 Fragaria x ananassa HOM05D000051 ORTHO05D000015 7.7e-06 54.7 40 60.0
Glyma.13G224200 Glycine max HOM05D001243 ORTHO05D000843 7.7e-06 54.7 41 58.5
Glyma.16G195300 Glycine max HOM05D001243 ORTHO05D000843 7.7e-06 54.7 59 50.8
Hma1.2p1_0106F.1_g050990 Hydrangea macrophylla HOM05D001396 ORTHO05D000493 7.7e-06 54.7 40 65.0
Lalb_Chr03g0034431 Lupinus albus HOM05D001243 ORTHO05D000843 7.7e-06 54.7 42 59.5


User provided reference genes

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