Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 0.0e+00 1239.9 634 100.0
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 1.5e-270 936.0 617 76.7
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 6.7e-263 910.6 623 75.6
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 2.6e-259 898.7 625 74.4
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 2.2e-250 869.0 617 72.3
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 4.4e-246 854.7 586 73.5
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 1.7e-229 799.7 510 80.0
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 3.7e-213 745.3 616 62.8
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 1.8e-207 726.5 627 60.4
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 2.0e-206 723.0 619 64.6
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 4.1e-204 715.3 612 61.8
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 1.7e-202 709.9 618 60.0
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.8e-199 698.0 615 60.3
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.5e-198 696.8 615 60.2
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 2.6e-198 696.0 622 59.0
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 5.8e-198 694.9 589 61.8
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 5.8e-198 694.9 612 59.2
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 2.9e-197 692.6 617 58.3
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 1.1e-196 690.6 618 58.6
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 1.9e-196 689.9 621 58.5
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 2.4e-196 689.5 613 58.4
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 1.6e-195 686.8 600 60.0
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 2.1e-195 686.4 618 60.0
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.3e-194 683.7 615 59.8
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 5.1e-194 681.8 638 58.0
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 9.5e-193 677.6 618 58.9
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 1.6e-192 676.8 618 57.3
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 2.8e-192 676.0 612 58.3
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.2e-192 674.9 620 58.5
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 1.1e-191 674.1 617 58.0
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 2.4e-191 672.9 628 57.6
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 3.1e-191 672.5 528 64.4
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 4.0e-191 672.2 616 56.0
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.0e-191 672.2 604 59.6
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 2.2e-189 666.4 623 55.2
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 2.2e-189 666.4 615 57.9
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 4.9e-189 665.2 614 58.8
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 3.2e-188 662.5 623 56.8
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 5.4e-188 661.8 615 56.6
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 1.2e-187 660.6 419 76.8
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 1.2e-187 660.6 613 55.8
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 2.7e-187 659.4 504 66.3
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 3.0e-186 656.0 607 57.3
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 5.1e-186 655.2 609 56.5
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 5.1e-186 655.2 643 54.0
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 4.3e-185 652.1 616 56.2
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 1.3e-184 650.6 617 55.4
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 2.8e-184 649.4 597 57.8
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 3.6e-184 649.0 505 63.6
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 3.6e-184 649.0 617 56.2
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 5.8e-182 641.7 607 55.5
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 5.8e-182 641.7 610 55.7
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 5.8e-182 641.7 606 54.8
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 7.6e-182 641.3 624 55.6
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 9.9e-182 641.0 615 56.1
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 1.3e-181 640.6 448 73.0
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 1.7e-181 640.2 606 55.9
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 1.4e-180 637.1 590 60.2
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 4.2e-180 635.6 624 55.0
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 7.1e-180 634.8 612 55.2
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 1.6e-179 633.6 640 53.8
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 2.1e-179 633.3 618 55.3
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 6.0e-179 631.7 612 55.1
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 7.8e-179 631.3 624 54.0
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 1.0e-178 630.9 561 57.4
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 2.3e-178 629.8 611 54.7
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 2.3e-178 629.8 615 55.1
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 6.6e-178 628.2 619 55.3
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 3.3e-177 625.9 586 55.1
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 4.3e-177 625.5 621 54.4
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 1.3e-176 624.0 619 54.9
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 1.3e-176 624.0 493 62.9
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 1.1e-175 620.9 591 55.3
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 4.0e-175 619.0 619 55.4
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 6.9e-175 618.2 617 54.6
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 2.0e-174 616.7 597 53.6
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 3.4e-174 615.9 674 50.1
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 4.5e-174 615.5 624 55.8
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 4.9e-173 612.1 599 55.6
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 1.2e-171 607.4 665 49.2
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 1.6e-171 607.1 616 53.6
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 7.4e-169 598.2 481 63.2
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.8e-168 596.3 629 54.1
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 1.8e-167 593.6 618 51.8
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 9.0e-167 591.3 606 52.8
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 1.1e-161 574.3 514 57.8
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 6.9e-159 565.1 418 67.2
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 4.9e-157 558.9 608 51.3
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 7.9e-155 551.6 580 51.6
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 7.4e-153 545.0 603 48.4
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 1.3e-152 544.3 557 53.0
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 2.8e-152 543.1 616 47.6
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 2.8e-152 543.1 470 59.1
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 1.0e-149 534.6 469 55.9
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 3.2e-148 529.6 487 54.6
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 7.2e-148 528.5 438 61.6
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 5.9e-142 508.8 519 51.8
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 3.0e-130 469.9 295 80.7
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 2.5e-124 450.3 650 40.9
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 3.0e-122 443.4 653 40.3
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 4.4e-121 439.5 356 61.2
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 2.4e-119 433.7 651 40.6
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 7.5e-113 412.1 371 58.0
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 5.4e-111 406.0 346 61.0
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 5.9e-102 375.9 284 68.0
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 9.8e-97 358.6 445 42.0
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 2.3e-93 347.4 392 45.4
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 4.6e-86 323.2 329 53.5
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 4.3e-68 263.5 335 43.0
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 9.9e-65 252.3 235 53.6
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 3.2e-63 247.3 262 51.5
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 9.3e-63 245.7 184 62.5
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.7e-61 239.2 161 70.8
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.7e-61 239.2 161 70.8
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.7e-61 239.2 161 70.8
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.7e-61 239.2 161 70.8
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 6.2e-59 233.0 155 66.5
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 2.4e-58 231.1 385 36.6
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 1.3e-51 208.8 219 52.5
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 3.8e-48 197.2 239 51.0
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 1.3e-45 188.7 196 53.1
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 2.9e-40 171.0 226 42.9
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 1.2e-38 165.6 156 61.5
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 2.7e-38 164.5 98 74.5
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 1.8e-37 161.8 179 45.8
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 4.3e-36 157.1 524 28.6
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 4.5e-33 147.1 249 41.0
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 5.7e-28 130.2 168 43.5
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.4e-28 129.8 161 45.3
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.4e-28 129.8 161 45.3
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.4e-28 129.8 161 45.3
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.4e-28 129.8 161 45.3
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.4e-28 129.8 161 45.3
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.4e-28 129.8 161 45.3
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.4e-28 129.8 161 45.3
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.4e-28 129.8 161 45.3
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.4e-28 129.8 161 45.3
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.4e-28 129.8 161 45.3
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.4e-28 129.8 161 45.3
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.4e-28 129.8 161 45.3
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.4e-28 129.8 161 45.3
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 2.8e-27 127.9 364 27.5
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 9.1e-26 122.9 226 35.0
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 1.0e-24 119.4 172 38.4
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 1.3e-24 119.0 87 63.2
vmacro06620 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 3.2e-23 114.4 137 46.7
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 5.9e-17 93.6 108 56.5
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 7.7e-17 93.2 91 57.1
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-16 90.9 143 35.7
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 8.5e-16 89.7 45 86.7
FAN23G0684 Fragaria x ananassa HOM05D002465 ORTHO05D000592 5.5e-15 87.0 161 35.4
PSO063G0346 Papaver somniferum HOM05D002465 ORTHO05D005308 4.7e-14 84.0 115 40.0
Sabra17G0121500 Salix brachista HOM05D002465 ORTHO05D005308 1.0e-13 82.8 145 39.3
Psat2g076120 Pisum sativum HOM05D024525 ORTHO05D005308 4.0e-13 80.9 59 72.9
Psat7g022520 Pisum sativum HOM05D024525 ORTHO05D005308 8.8e-13 79.7 64 70.3
Psat0s1616g0080 Pisum sativum HOM05D024525 ORTHO05D005308 1.7e-08 65.5 46 71.7
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 2.9e-08 64.7 72 40.3
Psat5g117880 Pisum sativum HOM05D024525 ORTHO05D005308 1.1e-07 62.8 36 77.8
CBR_g47978 Chara braunii HOM05D002465 ORTHO05D005308 1.5e-07 62.4 102 34.3
MBI04_g15062_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 2.5e-07 61.6 167 34.1
Psat2g119320 Pisum sativum HOM05D024525 ORTHO05D005308 3.2e-07 61.2 46 67.4
VMungo0720G2925 Vigna mungo HOM05D002465 ORTHO05D050744 6.1e-06 57.0 36 72.2


User provided reference genes

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