Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G123700 Glycine max HOM05D007950 ORTHO05D009951 1.5e-30 135.6 69 100.0
Phvul.003G020900 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 4.6e-24 114.0 70 82.9
arahy.Tifrunner.gnm1.ann1.7G47EE Arachis hypogaea HOM05D007950 ORTHO05D009951 1.6e-21 105.5 70 75.7
arahy.Tifrunner.gnm1.ann1.U6R6BR Arachis hypogaea HOM05D007950 ORTHO05D009951 1.6e-21 105.5 70 75.7
Psat1g042280 Pisum sativum HOM05D007950 ORTHO05D009951 8.9e-20 99.8 70 70.0
Medtr6g086645 Medicago truncatula HOM05D007950 ORTHO05D009951 5.8e-19 97.1 65 75.4
TPR.G35274 Trifolium pratense HOM05D007950 ORTHO05D009951 6.4e-18 93.6 64 70.3
CSS0015996 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 1.1e-17 92.8 68 72.1
vmacro20696 Vaccinium macrocarpon HOM05D007950 ORTHO05D009951 3.2e-17 91.3 70 65.7
GSVIVG01015395001 Vitis vinifera HOM05D007950 ORTHO05D009951 4.2e-17 90.9 70 68.6
Eucgr.C01044 Eucalyptus grandis HOM05D007950 ORTHO05D009951 1.6e-16 89.0 70 62.9
MD15G1186200 Malus domestica HOM05D007950 ORTHO05D009951 2.1e-16 88.6 70 65.7
Nn8g39199 Nelumbo nucifera HOM05D007950 ORTHO05D009951 7.8e-16 86.7 70 62.9
RcHm_v2.0_Chr2g0090511 Rosa chinensis HOM05D007950 ORTHO05D009951 7.8e-16 86.7 70 64.3
Thecc.09G111000 Theobroma cacao HOM05D007950 ORTHO05D009951 1.3e-15 85.9 70 65.7
Ciclev10010772m.g Citrus clementina HOM05D007950 ORTHO05D009951 1.7e-15 85.5 70 62.9
QL02p085472 Quercus lobata HOM05D007950 ORTHO05D009951 3.0e-15 84.7 69 59.4
FvH4_1g04841 Fragaria vesca HOM05D007950 ORTHO05D009951 6.6e-15 83.6 70 61.4
FAN19G2230 Fragaria x ananassa HOM05D007950 ORTHO05D009951 6.6e-15 83.6 70 61.4
FAN23G0617 Fragaria x ananassa HOM05D007950 ORTHO05D009951 6.6e-15 83.6 70 61.4
QL05p023317 Quercus lobata HOM05D007950 ORTHO05D009951 6.6e-15 83.6 69 58.0
FAN26G3407 Fragaria x ananassa HOM05D007950 ORTHO05D009951 8.7e-15 83.2 70 61.4
Actinidia20354 Actinidia chinensis HOM05D007950 ORTHO05D009951 1.1e-14 82.8 65 61.5
MD02G1047700 Malus domestica HOM05D007950 ORTHO05D009951 1.1e-14 82.8 70 62.9
Prupe.7G230500 Prunus persica HOM05D007950 ORTHO05D009951 2.5e-14 81.6 61 68.9
TAR636G2963 Trochodendron aralioides HOM05D007950 ORTHO05D009951 4.3e-14 80.9 65 61.5
CiPaw.04G164400 Carya illinoinensis HOM05D007950 ORTHO05D009951 5.6e-14 80.5 61 67.2
Manes.16G116501 Manihot esculenta HOM05D007950 ORTHO05D009951 5.6e-14 80.5 70 58.6
CiPaw.03G232500 Carya illinoinensis HOM05D007950 ORTHO05D009951 1.3e-13 79.3 66 60.6
Gohir.1Z049586 Gossypium hirsutum HOM05D007950 ORTHO05D009951 2.8e-13 78.2 70 57.1
Gohir.D03G063400 Gossypium hirsutum HOM05D007950 ORTHO05D009951 3.6e-13 77.8 70 57.1
Gorai.002G059800 Gossypium raimondii HOM05D007950 ORTHO05D009951 3.6e-13 77.8 70 57.1
Gohir.D06G060600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 6.2e-13 77.0 65 61.5
Gorai.010G070600 Gossypium raimondii HOM05D007950 ORTHO05D009951 6.2e-13 77.0 65 61.5
Gohir.A06G062300 Gossypium hirsutum HOM05D007950 ORTHO05D009951 8.1e-13 76.6 65 60.0
CSS0048253 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 1.1e-12 76.3 65 60.0
ATR0980G014 Amborella trichopoda HOM05D007950 ORTHO05D009951 1.4e-12 75.9 70 54.3
Potri.001G181701 Populus trichocarpa HOM05D007950 ORTHO05D009951 1.4e-12 75.9 65 55.4
Thecc.06G089600 Theobroma cacao HOM05D007950 ORTHO05D009951 1.4e-12 75.9 65 58.5
Nn2g11757 Nelumbo nucifera HOM05D007950 ORTHO05D009951 1.8e-12 75.5 70 52.9
ClCG06G008510 Citrullus lanatus HOM05D007950 ORTHO05D009951 2.4e-12 75.1 70 52.9
Gohir.A05G130600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 2.4e-12 75.1 65 60.0
Gohir.D05G129500 Gossypium hirsutum HOM05D007950 ORTHO05D009951 2.4e-12 75.1 65 60.0
CSS0032282 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 1.2e-11 72.8 64 57.8
CiPaw.02G150700 Carya illinoinensis HOM05D007950 ORTHO05D009951 1.5e-11 72.4 65 53.8
Eucgr.J02984 Eucalyptus grandis HOM05D007950 ORTHO05D009951 2.6e-11 71.6 57 57.9
Manes.11G045700 Manihot esculenta HOM05D007950 ORTHO05D009951 2.6e-11 71.6 68 51.5
CsaV3_1G030490 Cucumis sativus L. HOM05D007950 ORTHO05D009951 3.4e-11 71.2 68 50.0
Medtr6g086730 Medicago truncatula HOM05D007950 ORTHO05D009951 3.4e-11 71.2 50 70.0
PGR102G0372 Punica granatum HOM05D007950 ORTHO05D009951 9.9e-11 69.7 70 47.1
Cc06_g09630 Coffea canephora HOM05D007950 ORTHO05D009951 2.9e-10 68.2 59 55.9
Haze_16407 Corylus avellana HOM05D007950 ORTHO05D009951 2.9e-10 68.2 65 50.8
Haze_16408 Corylus avellana HOM05D007950 ORTHO05D009951 2.9e-10 68.2 65 50.8
Medtr4g012610 Medicago truncatula HOM05D007950 ORTHO05D009951 2.9e-10 68.2 70 51.4
Medtr4g012580 Medicago truncatula HOM05D007950 ORTHO05D009951 8.4e-10 66.6 65 50.8
Lj3g0016273 Lotus japonicus HOM05D007950 ORTHO05D009951 1.4e-09 65.9 70 48.6
Potri.003G054001 Populus trichocarpa HOM05D007950 ORTHO05D009951 1.4e-09 65.9 65 49.2
Dinv36624 Davidia involucrata HOM05D007950 ORTHO05D009951 3.2e-09 64.7 50 64.0
Glyma.08G206200 Glycine max HOM05D007950 ORTHO05D009951 7.1e-09 63.5 65 47.7
TPR.G24171 Trifolium pratense HOM05D007950 ORTHO05D009951 9.3e-09 63.2 65 49.2
Glyma.07G005901 Glycine max HOM05D000325 ORTHO05D002025 1.2e-08 62.8 65 47.7
Manes.03G020101 Manihot esculenta HOM05D007950 ORTHO05D009951 1.2e-08 62.8 70 51.4
Sc10g0007380 Simmondsia chinensis HOM05D007950 ORTHO05D009951 1.2e-08 62.8 65 47.7
Sed0000041 Sechium edule HOM05D007950 ORTHO05D009951 2.1e-08 62.0 60 48.3
Psat7g251240 Pisum sativum HOM05D007950 ORTHO05D009951 2.7e-08 61.6 70 45.7
arahy.Tifrunner.gnm1.ann1.6Z76EK Arachis hypogaea HOM05D007950 ORTHO05D009951 7.9e-08 60.1 72 45.8
Prupe.3G070100 Prunus persica HOM05D007950 ORTHO05D009951 3.9e-07 57.8 74 52.7
CDE06G0019 Ceratophyllum demersum HOM05D007950 ORTHO05D009951 8.7e-07 56.6 65 44.6
Lalb_Chr04g0262731 Lupinus albus HOM05D007950 ORTHO05D009951 1.9e-06 55.5 70 44.3
HanXRQChr09g0275201 Helianthus annuus HOM05D007950 ORTHO05D009951 2.5e-06 55.1 74 36.5
Lsat_1_v5_gn_5_103401 Lactuca sativa HOM05D007950 ORTHO05D009951 5.6e-06 53.9 70 44.3
TPR.G8534 Trifolium pratense HOM05D007950 ORTHO05D009951 5.6e-06 53.9 65 43.1


User provided reference genes

Program Settings