Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 3182.9 1616 100.0
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 3010.7 1616 94.9
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2933.7 1618 91.5
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2879.0 1616 89.4
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2871.6 1616 89.7
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2855.1 1616 89.0
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2829.7 1638 86.7
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2776.5 1585 88.4
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2595.8 1612 80.8
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2591.2 1620 80.4
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2589.3 1613 80.8
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2583.9 1611 79.9
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2579.7 1612 79.7
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2579.3 1616 80.4
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2570.8 1618 80.3
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2565.0 1616 79.6
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2556.2 1612 79.5
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2553.5 1612 79.2
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2548.5 1612 79.2
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2546.9 1616 79.3
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2530.0 1612 78.5
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2519.2 1625 77.9
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2518.0 1593 80.1
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2517.3 1616 77.8
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2516.5 1622 77.9
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2512.6 1616 77.0
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2506.1 1621 77.5
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2502.6 1598 77.9
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2501.5 1606 77.8
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2474.5 1528 81.0
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2474.1 1623 77.3
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2460.3 1613 77.1
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2454.1 1642 75.6
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2447.2 1628 76.0
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2433.3 1629 75.4
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2431.8 1615 76.8
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2404.4 1926 66.0
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2397.1 1510 79.4
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2393.2 1606 74.1
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2392.1 1621 75.1
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 2384.4 1958 65.3
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2376.3 1610 74.7
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2375.9 1614 74.6
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2367.8 1584 74.1
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2356.3 1656 72.8
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2353.2 1612 73.3
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2352.4 1620 73.5
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2348.2 1634 73.0
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2344.7 1627 73.1
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2341.6 1631 73.3
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2338.9 1619 72.6
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2335.5 1615 72.4
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2335.1 1608 73.6
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2334.7 1595 73.5
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2328.1 1446 80.4
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2325.4 1615 72.9
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2324.7 1629 72.5
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2322.4 1613 72.2
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2320.8 1665 70.8
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2318.1 1623 73.2
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2314.3 1617 71.7
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2303.1 1610 71.2
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2302.3 1613 71.5
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2300.0 1629 71.8
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2299.6 1622 71.6
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2276.5 1622 71.2
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2269.6 1623 70.9
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2269.2 1515 75.7
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2268.8 1423 78.9
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2257.3 1625 71.3
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2252.6 1627 70.9
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2252.6 1598 71.7
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2245.3 1631 70.4
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2242.2 1624 70.2
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2240.3 1631 70.6
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2231.8 1625 70.0
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2224.9 1624 69.8
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2216.0 1628 69.3
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2212.6 1627 70.0
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2207.9 1624 70.0
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 2187.9 1408 79.6
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 2185.2 1375 80.9
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2144.4 1551 69.7
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 2117.4 1624 66.7
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 2109.3 1605 67.4
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 2076.2 1469 72.1
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 2048.1 1612 65.0
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2047.3 1628 65.5
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 2036.5 1646 64.5
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 2011.9 1595 65.5
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 2001.1 1196 82.9
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1944.5 1605 62.9
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1880.1 1604 61.1
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1761.5 1583 60.2
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1744.2 1100 79.1
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1731.8 1217 72.2
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1630.2 1415 61.6
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1588.9 1372 62.1
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1521.5 976 76.7
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1491.1 966 76.3
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1481.8 1629 49.7
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1425.2 1208 59.8
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1409.0 1628 48.5
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1367.8 1587 46.7
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1248.0 1080 60.0
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1201.8 1627 46.4
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1180.2 732 80.2
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 1.4e-304 1050.4 646 81.1
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 5.6e-290 1001.9 534 96.1
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 3.5e-276 956.1 605 82.0
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 2.3e-259 900.2 514 89.7
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 2.6e-258 896.7 583 77.7
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 5.3e-256 889.0 620 71.1
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 4.0e-235 819.7 590 70.0
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.6e-234 817.0 602 68.6
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 1.0e-227 795.0 661 63.4
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 1.9e-216 757.7 522 73.6
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 5.4e-216 756.1 505 74.5
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 3.7e-201 706.8 479 75.2
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 1.5e-197 694.9 641 58.5
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 2.6e-194 684.1 559 63.9
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 6.6e-182 642.9 338 95.9
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 1.1e-181 642.1 420 79.0
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 3.2e-176 624.0 515 63.7
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 7.4e-173 612.8 563 60.2
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 9.7e-157 559.3 366 78.4
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.1e-155 555.8 491 57.2
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 2.3e-150 538.1 387 72.1
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 5.9e-146 523.5 325 82.2
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 2.9e-129 468.0 246 93.9
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 3.8e-129 467.6 292 82.2
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 4.0e-126 457.6 314 72.0
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 2.7e-122 444.9 251 85.7
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 1.5e-117 429.1 318 67.6
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 6.3e-116 423.7 398 57.0
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 7.7e-114 416.8 371 57.7
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 4.0e-110 404.4 316 66.5
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 1.1e-91 343.2 212 83.5
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 3.6e-71 275.0 161 83.9
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 7.6e-69 267.3 162 77.8
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 1.4e-59 236.5 142 76.1
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 1.2e-58 233.4 146 77.4
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 3.5e-58 231.9 142 78.9
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 7.1e-51 207.6 212 54.7
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 4.3e-48 198.4 129 76.7
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 1.4e-46 193.4 118 79.7
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 1.3e-39 170.2 102 80.4
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.8e-38 166.4 164 57.3
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.8e-38 166.4 164 57.3
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.8e-38 166.4 164 57.3
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.8e-38 166.4 164 57.3
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.4e-38 166.0 164 56.7
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 9.0e-38 164.1 143 61.5
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 9.0e-38 164.1 164 56.7
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.5e-37 163.3 164 56.7
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 4.5e-37 161.8 93 80.6
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.5e-35 156.0 142 59.2
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 9.4e-35 154.1 100 73.0
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.2e-34 153.7 101 71.3
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.3e-31 141.4 151 54.3
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.1e-30 140.6 151 54.3
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 1.2e-26 127.1 91 69.2
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 3.6e-26 125.6 84 69.0
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 1.3e-23 117.1 93 63.4
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 2.2e-23 116.3 93 62.4
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 3.1e-22 112.5 108 61.1
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 5.9e-21 108.2 56 87.5
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 2.3e-17 96.3 150 46.7
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 9.7e-16 90.9 55 81.8
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 8.2e-15 87.8 51 72.5
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 4.1e-14 85.5 76 60.5
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 1.7e-12 80.1 51 68.6
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 5.5e-11 75.1 56 66.1
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 1.2e-10 73.9 51 70.6
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 2.3e-09 69.7 54 63.0
Psat6g165840 Pisum sativum HOM05D004417 ORTHO05D322506 2.6e-08 66.2 70 51.4
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 6.3e-07 61.6 56 58.9
Psat0s3527g0040 Pisum sativum HOM05D005005 ORTHO05D006178 6.3e-07 61.6 38 65.8


User provided reference genes

Program Settings