Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 2.8e-111 405.2 196 100.0
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 1.4e-102 376.3 196 92.9
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 9.1e-94 347.1 196 84.7
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 2.6e-88 328.9 196 76.0
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 2.0e-85 319.3 196 75.0
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 1.3e-84 316.6 181 84.0
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 9.5e-83 310.5 191 72.8
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 5.8e-80 301.2 189 72.0
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 4.9e-79 298.1 196 72.4
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 1.5e-75 286.6 177 72.3
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 3.4e-72 275.4 181 74.6
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 4.9e-71 271.6 196 66.8
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 2.4e-70 269.2 196 66.3
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 2.4e-70 269.2 193 62.7
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 5.4e-70 268.1 197 65.0
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 7.0e-70 267.7 192 64.1
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 2.7e-69 265.8 196 63.8
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 6.0e-69 264.6 172 75.0
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 6.0e-69 264.6 195 63.1
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 1.3e-68 263.5 192 64.6
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 3.0e-68 262.3 196 62.8
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 8.6e-68 260.8 194 64.4
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 1.1e-67 260.4 171 74.9
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 1.9e-67 259.6 173 72.8
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 3.3e-67 258.8 196 61.2
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 3.3e-67 258.8 193 60.1
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 5.6e-67 258.1 171 74.3
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 7.3e-67 257.7 168 75.6
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 7.3e-67 257.7 196 62.8
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 7.3e-67 257.7 193 64.8
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 9.5e-67 257.3 193 64.2
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 1.2e-66 256.9 196 60.2
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 2.1e-66 256.1 198 61.6
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 2.1e-66 256.1 193 64.2
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.8e-66 255.8 193 63.7
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 3.6e-66 255.4 195 61.5
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 6.2e-66 254.6 194 60.3
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 6.2e-66 254.6 193 59.6
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 6.2e-66 254.6 193 59.6
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 8.1e-66 254.2 196 60.2
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 8.1e-66 254.2 193 61.1
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.4e-65 253.4 195 60.0
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.4e-65 253.4 195 60.0
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 1.4e-65 253.4 195 60.0
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 1.8e-65 253.1 196 62.2
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.3e-65 252.7 193 62.7
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 3.1e-65 252.3 195 59.5
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 4.0e-65 251.9 196 62.8
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 4.0e-65 251.9 196 59.7
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 2.6e-64 249.2 196 61.2
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 2.6e-64 249.2 197 60.9
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 3.4e-64 248.8 193 62.2
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.8e-64 248.1 193 59.6
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 2.9e-63 245.7 193 58.0
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 4.9e-63 245.0 162 73.5
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 8.3e-63 244.2 180 65.6
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 1.9e-62 243.0 196 59.2
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 3.2e-62 242.3 194 59.3
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 5.4e-62 241.5 193 60.1
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 7.1e-62 241.1 193 59.1
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 9.2e-62 240.7 196 57.1
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 1.6e-61 240.0 186 60.2
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 3.5e-61 238.8 193 56.5
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 6.0e-61 238.0 193 55.4
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 7.8e-61 237.7 193 57.5
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 7.8e-61 237.7 193 57.5
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 1.7e-60 236.5 187 61.0
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 1.7e-60 236.5 196 56.6
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 2.3e-60 236.1 174 64.4
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 3.0e-60 235.7 197 58.9
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 3.0e-60 235.7 197 60.4
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 6.6e-60 234.6 193 56.5
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 8.6e-60 234.2 196 55.6
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 8.6e-60 234.2 197 56.9
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 8.6e-60 234.2 197 57.4
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.6e-59 231.5 181 59.7
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 7.3e-59 231.1 196 54.6
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 1.2e-58 230.3 196 55.1
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 1.2e-58 230.3 198 57.6
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 1.6e-58 229.9 194 57.7
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 6.2e-58 228.0 195 56.4
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 1.1e-57 227.3 194 57.7
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 3.1e-57 225.7 200 54.5
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 8.9e-57 224.2 196 56.1
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 1.5e-56 223.4 201 54.2
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 1.5e-56 223.4 196 54.6
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 2.6e-56 222.6 192 55.2
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 5.8e-56 221.5 196 54.1
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 7.6e-56 221.1 196 54.1
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 7.6e-56 221.1 196 57.1
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 9.9e-56 220.7 196 54.1
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 2.2e-55 219.5 198 52.5
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 2.9e-55 219.2 199 53.8
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 2.9e-55 219.2 196 53.6
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 3.8e-55 218.8 198 53.0
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 4.9e-55 218.4 198 53.0
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 8.4e-55 217.6 196 54.1
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 8.4e-55 217.6 196 54.1
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 8.4e-55 217.6 181 56.9
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 8.4e-55 217.6 198 53.0
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 5.4e-54 214.9 178 57.3
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 7.1e-54 214.5 198 52.5
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 2.1e-53 213.0 161 65.2
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 2.7e-53 212.6 162 59.3
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 6.0e-53 211.5 194 51.5
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.7e-52 209.9 168 58.3
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 1.1e-49 200.7 169 59.8
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.9e-47 192.6 179 53.6
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 2.7e-45 186.0 194 50.0
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 3.5e-45 185.7 193 50.3
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 1.4e-41 173.7 197 45.7
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 4.5e-40 168.7 200 45.0
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.9e-40 167.5 171 50.9
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 1.4e-38 163.7 204 43.1
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 8.7e-36 154.5 207 41.5
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 9.6e-35 151.0 192 40.1
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 1.1e-33 147.5 178 45.5
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 3.4e-32 142.5 169 46.7
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.9e-32 141.0 110 61.8
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 7.9e-29 131.3 102 58.8
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 1.1e-22 110.9 180 37.8
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 1.9e-22 110.2 93 58.1
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.3e-19 99.0 84 57.1
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.8e-17 93.6 85 54.1
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.2e-14 81.6 86 50.0
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.1e-13 80.1 73 53.4
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 1.5e-11 73.9 65 52.3
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.2e-10 70.1 42 73.8
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 3.1e-09 66.2 61 50.8
Actinidia22361 Actinidia chinensis HOM05D002238 ORTHO05D055889 3.8e-07 59.3 52 50.0
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 2.5e-06 56.6 55 50.9
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 9.4e-06 54.7 54 50.0


User provided reference genes

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