Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 2.7e-211 738.4 378 100.0
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 4.2e-204 714.5 378 97.4
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 3.1e-191 671.8 378 92.3
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 6.3e-176 620.9 372 86.0
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 2.4e-175 619.0 362 87.8
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 7.7e-174 614.0 406 80.0
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 2.9e-173 612.1 372 84.7
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 2.9e-173 612.1 378 86.2
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 5.5e-172 607.8 370 84.3
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 3.5e-158 562.0 342 81.6
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 3.0e-157 558.9 350 80.3
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 3.9e-157 558.5 350 81.4
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 1.1e-156 557.0 340 82.1
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 1.9e-156 556.2 335 82.7
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 7.3e-156 554.3 350 80.6
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 3.6e-155 552.0 351 80.1
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 1.8e-154 549.7 378 74.9
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 1.5e-153 546.6 354 78.2
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 1.5e-153 546.6 338 80.8
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 2.0e-153 546.2 335 80.9
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 2.6e-153 545.8 350 78.9
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 4.4e-153 545.0 350 80.9
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 4.4e-153 545.0 337 82.5
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 2.2e-152 542.7 340 80.6
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 2.2e-152 542.7 340 80.6
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 3.7e-152 542.0 361 77.0
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 6.4e-152 541.2 340 80.6
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 8.3e-152 540.8 350 78.3
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 2.4e-151 539.3 339 82.6
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 2.4e-151 539.3 350 78.3
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 4.1e-151 538.5 357 76.2
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 7.0e-151 537.7 365 74.2
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 1.2e-150 537.0 352 77.6
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 1.2e-150 537.0 355 78.3
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 1.2e-150 537.0 365 74.2
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 2.0e-150 536.2 350 80.0
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 3.5e-150 535.4 338 82.0
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 5.0e-149 531.6 403 69.7
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 1.1e-148 530.4 351 77.2
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 1.5e-148 530.0 330 81.8
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.9e-148 529.6 350 78.0
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 2.5e-148 529.3 356 76.7
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 3.3e-148 528.9 350 77.4
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 5.6e-148 528.1 361 74.8
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 7.3e-148 527.7 313 83.7
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 9.5e-148 527.3 348 77.6
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 1.6e-147 526.6 350 77.1
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 2.1e-147 526.2 352 77.0
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 3.6e-147 525.4 353 76.8
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 3.6e-147 525.4 353 76.8
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 4.7e-147 525.0 350 76.6
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 6.2e-147 524.6 353 76.5
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 6.2e-147 524.6 353 76.5
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 6.2e-147 524.6 330 79.4
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 8.1e-147 524.2 350 76.6
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 1.1e-146 523.9 353 76.5
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 3.1e-146 522.3 329 80.9
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 5.2e-146 521.5 335 79.1
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 6.8e-146 521.2 352 77.6
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 6.8e-146 521.2 338 77.8
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 6.8e-146 521.2 342 79.5
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 8.9e-146 520.8 361 74.0
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 1.5e-145 520.0 335 77.9
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 2.0e-145 519.6 338 77.5
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 2.6e-145 519.2 342 78.9
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 3.4e-145 518.8 335 77.6
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 5.8e-145 518.1 335 77.0
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 1.7e-144 516.5 317 82.0
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 2.9e-144 515.8 376 72.6
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 3.7e-144 515.4 379 70.4
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 1.1e-143 513.8 317 80.8
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 1.2e-142 510.4 313 82.1
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 8.6e-141 504.2 311 80.7
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 1.5e-140 503.4 311 81.4
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 5.6e-140 501.5 316 80.1
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 4.7e-139 498.4 311 79.7
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 7.6e-137 491.1 354 71.5
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 1.4e-135 486.9 355 72.4
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 5.4e-135 485.0 355 69.6
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 5.4e-135 485.0 355 69.0
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 1.2e-134 483.8 317 78.2
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.6e-134 483.4 305 81.6
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 2.7e-134 482.6 364 72.3
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 3.0e-133 479.2 373 71.0
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 6.6e-133 478.0 424 63.2
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 6.6e-133 478.0 357 72.3
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 7.3e-132 474.6 359 71.6
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 6.2e-131 471.5 287 83.6
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 6.2e-131 471.5 307 79.2
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 8.9e-130 467.6 307 77.5
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 3.8e-128 462.2 419 60.1
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 1.1e-127 460.7 330 72.1
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 3.2e-127 459.1 315 72.4
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 1.0e-125 454.1 302 76.5
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 1.7e-125 453.4 294 78.6
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 5.6e-124 448.4 280 81.1
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 2.2e-120 436.4 346 67.9
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 1.3e-117 427.2 329 69.3
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 3.1e-114 416.0 314 66.9
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 4.2e-111 405.6 325 63.4
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 7.9e-110 401.4 334 63.2
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 3.0e-109 399.4 242 83.9
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 4.8e-107 392.1 217 89.9
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 2.0e-105 386.7 255 75.7
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 1.4e-98 364.0 221 83.3
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 7.7e-89 331.6 305 57.7
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.1e-84 317.8 230 69.1
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 1.5e-81 307.4 308 54.9
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 5.9e-81 305.4 307 53.4
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 6.5e-80 302.0 187 79.7
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 9.4e-79 298.1 192 77.6
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 5.3e-74 282.3 220 65.9
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 1.7e-72 277.3 235 61.7
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 5.5e-71 272.3 167 82.6
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 4.8e-67 259.2 350 47.1
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.5e-60 237.7 151 78.8
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 8.3e-59 231.9 285 49.8
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 5.2e-53 212.6 160 68.1
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 2.4e-50 203.8 144 71.5
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 1.2e-44 184.9 242 47.9
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 3.2e-42 176.8 181 52.5
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 1.6e-38 164.5 123 65.0
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 4.7e-38 162.9 265 40.4
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 8.9e-37 158.7 112 76.8
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.2e-36 158.3 280 34.6
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.2e-36 158.3 110 68.2
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 6.4e-35 152.5 263 38.0
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 9.2e-34 148.7 243 44.0
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 4.6e-33 146.4 101 78.2
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 3.9e-32 143.3 81 92.6
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 3.1e-29 133.7 88 73.9
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 6.8e-21 105.9 108 55.6
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 6.4e-19 99.4 113 50.4
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 6.4e-19 99.4 70 72.9
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.2e-17 95.1 88 60.2
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.2e-17 95.1 53 81.1
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.3e-16 91.7 56 82.1
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 3.9e-16 90.1 62 69.4
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 1.2e-14 85.1 55 72.7
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.1e-10 72.0 43 76.7
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 7.1e-10 69.3 89 44.9
DCAR_023607 Daucus carota HOM05D005313 ORTHO05D006317 1.3e-06 58.5 61 54.1


User provided reference genes

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