Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G117950 Glycine max HOM05D000905 ORTHO05D000749 2.2e-35 151.8 77 100.0
Glyma.05G032600 Glycine max HOM05D000905 ORTHO05D000749 2.7e-25 118.2 63 93.7
Glyma.17G094100 Glycine max HOM05D000905 ORTHO05D000749 6.7e-24 113.6 63 88.9
Phvul.003G196100 Phaseolus vulgaris HOM05D000905 ORTHO05D000749 3.1e-21 104.8 63 82.5
VMungo1215G1294 Vigna mungo HOM05D000905 ORTHO05D000749 3.4e-20 101.3 63 79.4
Phvul.009G183200 Phaseolus vulgaris HOM05D000905 ORTHO05D000749 2.2e-19 98.6 64 76.6
TPR.G38409 Trifolium pratense HOM05D000905 ORTHO05D000749 3.8e-19 97.8 63 76.2
Medtr4g107110 Medicago truncatula HOM05D000905 ORTHO05D000749 5.0e-19 97.4 63 74.6
VMungo1309G1811 Vigna mungo HOM05D000905 ORTHO05D000749 1.4e-18 95.9 64 73.4
Lalb_Chr12g0201301 Lupinus albus HOM05D000905 ORTHO05D000749 4.2e-18 94.4 63 74.6
Glyma.04G177600 Glycine max HOM05D000905 ORTHO05D000749 7.2e-18 93.6 64 73.4
Glyma.06G187500 Glycine max HOM05D000905 ORTHO05D000749 1.6e-17 92.4 64 71.9
Psat4g055280 Pisum sativum HOM05D000905 ORTHO05D000749 6.1e-17 90.5 63 69.8
Lj4g0005128 Lotus japonicus HOM05D000905 ORTHO05D000749 7.9e-17 90.1 65 72.3
arahy.Tifrunner.gnm1.ann1.6S4AXF Arachis hypogaea HOM05D000905 ORTHO05D000749 2.3e-16 88.6 63 71.4
arahy.Tifrunner.gnm1.ann1.Y3FQDK Arachis hypogaea HOM05D000905 ORTHO05D000749 2.3e-16 88.6 63 71.4
Ca_21875_v3 Cicer arietinum L. HOM05D000905 ORTHO05D000749 2.3e-16 88.6 63 71.4
Lalb_Chr13g0298011 Lupinus albus HOM05D000905 ORTHO05D000749 3.7e-14 81.3 65 64.6
GSVIVG01007847001 Vitis vinifera HOM05D000905 ORTHO05D000749 1.8e-13 79.0 76 56.6
arahy.Tifrunner.gnm1.ann1.DJ21JL Arachis hypogaea HOM05D000905 ORTHO05D000749 5.3e-13 77.4 64 64.1
TWI81G0247 Tripterygium wilfordii HOM05D000905 ORTHO05D000749 2.0e-12 75.5 64 59.4
TWI15G0950 Tripterygium wilfordii HOM05D000905 ORTHO05D000749 5.9e-12 73.9 64 57.8
arahy.Tifrunner.gnm1.ann1.N0FVBM Arachis hypogaea HOM05D000905 ORTHO05D000749 1.7e-11 72.4 64 60.9
Dinv02654 Davidia involucrata HOM05D000905 ORTHO05D000749 5.0e-11 70.9 76 51.3
MD14G1188900 Malus domestica HOM05D000905 ORTHO05D000749 8.5e-11 70.1 64 59.4
Prupe.5G181300 Prunus persica HOM05D000905 ORTHO05D000749 8.5e-11 70.1 64 56.2
Haze_07420 Corylus avellana HOM05D000905 ORTHO05D000749 2.5e-10 68.6 64 60.9
Eucgr.K02894 Eucalyptus grandis HOM05D000905 ORTHO05D000749 3.2e-10 68.2 60 58.3
Manes.14G071700 Manihot esculenta HOM05D000905 ORTHO05D000749 4.2e-10 67.8 64 54.7
MD06G1183000 Malus domestica HOM05D000905 ORTHO05D000749 5.5e-10 67.4 66 56.1
Manes.06G099400 Manihot esculenta HOM05D000905 ORTHO05D000749 7.2e-10 67.0 59 55.9
Dinv13123 Davidia involucrata HOM05D000905 ORTHO05D000749 9.4e-10 66.6 76 47.4
CSS0015033 Camellia sinensis var. sinensis HOM05D000905 ORTHO05D000749 1.2e-09 66.2 70 54.3
Duzib205G0409 Durio zibethinus HOM05D000905 ORTHO05D000749 1.2e-09 66.2 67 52.2
Actinidia34967 Actinidia chinensis HOM05D000905 ORTHO05D000749 2.7e-09 65.1 60 60.0
CiPaw.11G033800 Carya illinoinensis HOM05D000905 ORTHO05D000749 2.7e-09 65.1 57 59.6
MSTRG.23076 Avicennia marina HOM05D000905 ORTHO05D000749 4.6e-09 64.3 73 47.9
Duzib084G1339 Durio zibethinus HOM05D000905 ORTHO05D000749 4.6e-09 64.3 64 54.7
CANSAT80G0025 Cannabis sativa HOM05D000905 ORTHO05D000749 6.1e-09 63.9 64 50.0
Actinidia19070 Actinidia chinensis HOM05D000905 ORTHO05D000749 1.0e-08 63.2 71 46.5
PSO591G0327 Papaver somniferum HOM05D000905 ORTHO05D000749 1.0e-08 63.2 64 51.6
PSO832G0782 Papaver somniferum HOM05D000905 ORTHO05D000749 1.0e-08 63.2 64 53.1
Ah.11g046330 Amaranthus hybridus HOM05D000905 ORTHO05D000749 1.4e-08 62.8 79 45.6
MSTRG.9659 Avicennia marina HOM05D000905 ORTHO05D000749 1.4e-08 62.8 46 65.2
SalBow3G0043 Salvia bowleyana HOM05D000905 ORTHO05D000749 1.8e-08 62.4 46 63.0
Hund02702 Selenicereus undatus HOM05D000905 ORTHO05D000749 1.8e-08 62.4 78 48.7
Hma1.2p1_0002F.1_g002960 Hydrangea macrophylla HOM05D000905 ORTHO05D000749 2.3e-08 62.0 76 47.4
Sed0017175 Sechium edule HOM05D000905 ORTHO05D000749 3.0e-08 61.6 65 58.5
Thecc.03G001800 Theobroma cacao HOM05D000905 ORTHO05D000749 3.0e-08 61.6 64 54.7
EL10Ac5g10862 Beta vulgaris HOM05D000905 ORTHO05D000749 5.1e-08 60.8 79 45.6
Atru.chr9.2382 Acer truncatum HOM05D000905 ORTHO05D000749 6.7e-08 60.5 60 56.7
Actinidia37688 Actinidia chinensis HOM05D000905 ORTHO05D000749 6.7e-08 60.5 62 51.6
MSTRG.4392 Avicennia marina HOM05D000905 ORTHO05D000749 6.7e-08 60.5 59 55.9
Sc04g0002210 Simmondsia chinensis HOM05D000905 ORTHO05D000749 6.7e-08 60.5 64 53.1
MBI15_g14834_MAGBIO Magnolia biondii HOM05D000905 ORTHO05D000749 8.8e-08 60.1 57 54.4
Actinidia04951 Actinidia chinensis HOM05D000905 ORTHO05D000749 1.1e-07 59.7 63 50.8
AL8G39480 Arabidopsis lyrata HOM05D000905 ORTHO05D000749 1.1e-07 59.7 60 53.3
AT5G62580 Arabidopsis thaliana HOM05D000905 ORTHO05D000749 1.1e-07 59.7 76 47.4
TAR374G1378 Trochodendron aralioides HOM05D000905 ORTHO05D000749 1.1e-07 59.7 64 53.1
Carub.0008s2327 Capsella rubella HOM05D000905 ORTHO05D000749 1.5e-07 59.3 60 53.3
CARHR276370 Cardamine hirsuta HOM05D000905 ORTHO05D000749 1.5e-07 59.3 60 53.3
Gohir.A03G076200 Gossypium hirsutum HOM05D000905 ORTHO05D000749 1.5e-07 59.3 47 66.0
SGA_v2.0_scaffold114G31860 Striga asiatica HOM05D000905 ORTHO05D000749 2.6e-07 58.5 58 51.7
THA.LOC104819432 Tarenaya hassleriana HOM05D000905 ORTHO05D000749 2.6e-07 58.5 81 40.7
Gohir.D03G089500 Gossypium hirsutum HOM05D000905 ORTHO05D000749 3.3e-07 58.2 35 77.1
Gorai.003G071900 Gossypium raimondii HOM05D000905 ORTHO05D000749 3.3e-07 58.2 35 77.1
Nn4g22959 Nelumbo nucifera HOM05D000905 ORTHO05D000749 3.3e-07 58.2 66 53.0
Potri.015G069200 Populus trichocarpa HOM05D000905 ORTHO05D000749 3.3e-07 58.2 58 51.7
AUR62031063 Chenopodium quinoa HOM05D000905 ORTHO05D000749 5.7e-07 57.4 81 46.9
Peaxi162Scf00017g02219 Petunia axillaris HOM05D000905 ORTHO05D000749 5.7e-07 57.4 76 47.4
Nitab4.5_0000642g0230 Nicotiana tabacum HOM05D000905 ORTHO05D000749 7.4e-07 57.0 62 50.0
Nitab4.5_0002875g0060 Nicotiana tabacum HOM05D000905 ORTHO05D000749 7.4e-07 57.0 62 50.0
Solyc03g113680.4 Solanum lycopersicum HOM05D000905 ORTHO05D000749 7.4e-07 57.0 62 51.6
PGR044G2393 Punica granatum HOM05D000905 ORTHO05D000749 9.7e-07 56.6 64 53.1
PGSC0003DMG400024575 Solanum tuberosum HOM05D000905 ORTHO05D000749 9.7e-07 56.6 62 51.6
Ah.02g112810 Amaranthus hybridus HOM05D000905 ORTHO05D000749 1.3e-06 56.2 78 43.6
MELO3C017132.2 Cucumis melo HOM05D000905 ORTHO05D000749 1.3e-06 56.2 48 62.5
Lj5C119T11 Lonicera japonica HOM05D000905 ORTHO05D000749 1.3e-06 56.2 76 44.7
Nn3g17052 Nelumbo nucifera HOM05D000905 ORTHO05D000749 1.3e-06 56.2 64 53.1
ClCG06G016620 Citrullus lanatus HOM05D000905 ORTHO05D000749 1.7e-06 55.8 48 62.5
Sp2g25770 Schrenkiella parvula HOM05D000905 ORTHO05D000749 1.7e-06 55.8 80 41.2
Sopen03g032730 Solanum pennellii HOM05D000905 ORTHO05D000749 1.7e-06 55.8 62 51.6
CSS0043302 Camellia sinensis var. sinensis HOM05D000905 ORTHO05D000749 2.2e-06 55.5 64 45.3
Aqoxy3G03163 Aquilegia oxysepala HOM05D000905 ORTHO05D000749 2.8e-06 55.1 63 54.0
SGA_v2.0_scaffold56G20086 Striga asiatica HOM05D000905 ORTHO05D000749 2.8e-06 55.1 35 71.4
CsaV3_1G001890 Cucumis sativus L. HOM05D000905 ORTHO05D000749 3.7e-06 54.7 48 60.4
Sabra15G0093600 Salix brachista HOM05D000905 ORTHO05D000749 4.8e-06 54.3 59 45.8
THA.LOC104821446 Tarenaya hassleriana HOM05D000905 ORTHO05D000749 6.3e-06 53.9 81 39.5
AUR62008301 Chenopodium quinoa HOM05D000905 ORTHO05D000749 8.2e-06 53.5 79 45.6
TAR371G0402 Trochodendron aralioides HOM05D000905 ORTHO05D000749 8.2e-06 53.5 64 51.6


User provided reference genes

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