Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G116500 Glycine max HOM05D006880 ORTHO05D008638 2.8e-100 368.6 190 100.0
Glyma.09G116700 Glycine max HOM05D006880 ORTHO05D008638 7.5e-93 344.0 192 94.3
Glyma.06G149800 Glycine max HOM05D006880 ORTHO05D008638 3.3e-88 328.6 192 88.5
Phvul.009G147400 Phaseolus vulgaris HOM05D006880 ORTHO05D008638 5.0e-81 304.7 201 82.1
QL06p051802 Quercus lobata HOM05D006880 ORTHO05D008638 4.3e-80 301.6 193 80.8
TPR.G18722 Trifolium pratense HOM05D006880 ORTHO05D008638 7.3e-80 300.8 196 80.6
Lalb_Chr08g0238661 Lupinus albus HOM05D006880 ORTHO05D008638 1.4e-78 296.6 191 79.6
Medtr3g095480 Medicago truncatula HOM05D006880 ORTHO05D008638 1.4e-78 296.6 179 84.4
CiPaw.03G123600 Carya illinoinensis HOM05D006880 ORTHO05D008638 2.3e-78 295.8 201 77.6
Ca_16914_v3 Cicer arietinum L. HOM05D006880 ORTHO05D008638 2.3e-78 295.8 195 78.5
Lalb_Chr11g0068241 Lupinus albus HOM05D006880 ORTHO05D008638 3.1e-78 295.4 182 83.0
Lj1g0010031 Lotus japonicus HOM05D006880 ORTHO05D008638 4.0e-78 295.0 194 80.4
ClCG01G015680 Citrullus lanatus HOM05D006880 ORTHO05D008638 9.8e-77 290.4 191 76.4
CANSAT01G0776 Cannabis sativa HOM05D006880 ORTHO05D008638 3.7e-76 288.5 178 82.6
Psat5g063920 Pisum sativum HOM05D006880 ORTHO05D008638 3.7e-76 288.5 196 77.6
RcHm_v2.0_Chr2g0119191 Rosa chinensis HOM05D006880 ORTHO05D008638 3.7e-76 288.5 192 76.6
Sabra16G0194800 Salix brachista HOM05D006880 ORTHO05D008638 6.4e-76 287.7 201 75.1
FAN23G3120 Fragaria x ananassa HOM05D006880 ORTHO05D008638 8.3e-76 287.3 192 75.5
FvH4_1g23610 Fragaria vesca HOM05D006880 ORTHO05D008638 1.1e-75 287.0 192 75.5
FAN28G1236 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.1e-75 287.0 192 75.5
FAN19G0460 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.4e-75 286.6 192 75.5
Prupe.6G162500 Prunus persica HOM05D006880 ORTHO05D008638 1.4e-75 286.6 192 76.0
FAN26G3452 Fragaria x ananassa HOM05D006880 ORTHO05D008638 5.4e-75 284.6 192 75.0
arahy.Tifrunner.gnm1.ann1.91R8ME Arachis hypogaea HOM05D006880 ORTHO05D008638 9.2e-75 283.9 193 77.2
MELO3C008029.2 Cucumis melo HOM05D006880 ORTHO05D008638 9.2e-75 283.9 191 77.0
Oeu054906.1 Olea europaea HOM05D006880 ORTHO05D008638 9.2e-75 283.9 199 75.9
arahy.Tifrunner.gnm1.ann1.546D2B Arachis hypogaea HOM05D006880 ORTHO05D008638 1.2e-74 283.5 191 79.1
Gorai.011G115200 Gossypium raimondii HOM05D006880 ORTHO05D008638 2.7e-74 282.3 192 77.6
Gohir.A10G083300 Gossypium hirsutum HOM05D006880 ORTHO05D008638 3.5e-74 282.0 192 77.6
Gohir.D10G105600 Gossypium hirsutum HOM05D006880 ORTHO05D008638 3.5e-74 282.0 192 77.6
Potri.001G309000 Populus trichocarpa HOM05D006880 ORTHO05D008638 3.5e-74 282.0 180 78.3
TWI79G0189 Tripterygium wilfordii HOM05D006880 ORTHO05D008638 4.6e-74 281.6 194 76.8
Duzib147G0678 Durio zibethinus HOM05D006880 ORTHO05D008638 6.0e-74 281.2 199 75.4
Thecc.01G120600 Theobroma cacao HOM05D006880 ORTHO05D008638 6.0e-74 281.2 200 75.5
ECA247G1470 Erigeron canadensis HOM05D006880 ORTHO05D008638 7.8e-74 280.8 192 75.5
Potri.019G006500 Populus trichocarpa HOM05D006880 ORTHO05D008638 1.3e-73 280.0 197 75.6
SGA_v2.0_scaffold178G39501 Striga asiatica HOM05D006880 ORTHO05D008638 1.3e-73 280.0 179 78.2
COL.COLO4_22415 Corchorus olitorius HOM05D006880 ORTHO05D008638 1.7e-73 279.6 178 80.9
HanXRQChr02g0039401 Helianthus annuus HOM05D006880 ORTHO05D008638 2.3e-73 279.3 192 75.0
CiPaw.04G083800 Carya illinoinensis HOM05D006880 ORTHO05D008638 3.0e-73 278.9 196 73.5
Hma1.2p1_0006F.1_g004965 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 3.9e-73 278.5 180 78.9
Hma1.2p1_0025F.1_g016260 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 3.9e-73 278.5 180 78.9
Hma1.2p1_1667F.1_g296585 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 3.9e-73 278.5 180 78.9
Sabra19G0018800 Salix brachista HOM05D006880 ORTHO05D008638 3.9e-73 278.5 196 74.5
Actinidia06675 Actinidia chinensis HOM05D006880 ORTHO05D008638 5.1e-73 278.1 178 78.7
Sabra19G0023300 Salix brachista HOM05D006880 ORTHO05D008638 5.1e-73 278.1 195 74.4
Cpa.g.sc453.1 Carica papaya HOM05D006880 ORTHO05D008638 2.5e-72 275.8 200 72.0
Manes.12G148400 Manihot esculenta HOM05D006880 ORTHO05D008638 3.3e-72 275.4 204 71.6
Aqoxy5G02095 Aquilegia oxysepala HOM05D006880 ORTHO05D008638 7.3e-72 274.2 189 76.2
Cc07_g17330 Coffea canephora HOM05D006880 ORTHO05D008638 7.3e-72 274.2 198 73.2
Gorai.002G151100 Gossypium raimondii HOM05D006880 ORTHO05D008638 9.5e-72 273.9 196 74.0
PSO675G8574 Papaver somniferum HOM05D006880 ORTHO05D008638 1.2e-71 273.5 193 75.6
Solyc11g005390.3 Solanum lycopersicum HOM05D006880 ORTHO05D008638 1.6e-71 273.1 196 72.4
Sopen11g001400 Solanum pennellii HOM05D006880 ORTHO05D008638 1.6e-71 273.1 196 72.4
Migut.H01108 Erythranthe guttata HOM05D006880 ORTHO05D008638 3.6e-71 271.9 201 70.6
Nn1g06089 Nelumbo nucifera HOM05D006880 ORTHO05D008638 3.6e-71 271.9 190 74.2
Duzib187G0911 Durio zibethinus HOM05D006880 ORTHO05D008638 4.7e-71 271.6 196 74.5
MD01G1016600 Malus domestica HOM05D006880 ORTHO05D008638 4.7e-71 271.6 199 72.4
PSO541G1054 Papaver somniferum HOM05D006880 ORTHO05D008638 6.2e-71 271.2 193 75.1
PGSC0003DMG400003965 Solanum tuberosum HOM05D006880 ORTHO05D008638 8.1e-71 270.8 178 77.0
Ciclev10026534m.g Citrus clementina HOM05D006880 ORTHO05D008638 1.1e-70 270.4 199 72.9
Atru.chr4.544 Acer truncatum HOM05D006880 ORTHO05D008638 1.8e-70 269.6 196 73.0
GSVIVG01026589001 Vitis vinifera HOM05D006880 ORTHO05D008638 2.3e-70 269.2 172 79.1
TAR628G0678 Trochodendron aralioides HOM05D006880 ORTHO05D008638 6.8e-70 267.7 192 71.9
CSS0034618 Camellia sinensis var. sinensis HOM05D006880 ORTHO05D008638 3.4e-69 265.4 189 75.1
Lj2A591T43 Lonicera japonica HOM05D006880 ORTHO05D008638 7.6e-69 264.2 196 69.9
HanXRQChr05g0137731 Helianthus annuus HOM05D006880 ORTHO05D008638 8.4e-68 260.8 191 71.2
CDE08G0745 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 4.1e-67 258.5 188 70.2
Sed0021560 Sechium edule HOM05D006880 ORTHO05D008638 4.6e-66 255.0 192 70.8
THA.LOC104821864 Tarenaya hassleriana HOM05D006880 ORTHO05D008638 4.6e-66 255.0 179 74.3
Aa31LG8G5640 Aethionema arabicum HOM05D006880 ORTHO05D008638 6.0e-66 254.6 201 68.7
Carub.0003s1862 Capsella rubella HOM05D006880 ORTHO05D008638 6.0e-66 254.6 199 70.9
AUR62017937 Chenopodium quinoa HOM05D006880 ORTHO05D008638 6.0e-66 254.6 205 68.8
AL3G32180 Arabidopsis lyrata HOM05D006880 ORTHO05D008638 1.0e-65 253.8 199 69.8
BcaC02g12236 Brassica carinata HOM05D006880 ORTHO05D008638 1.0e-65 253.8 201 68.7
BcaC05g28570 Brassica carinata HOM05D006880 ORTHO05D008638 1.0e-65 253.8 201 68.7
BolC5t33399H Brassica oleracea HOM05D006880 ORTHO05D008638 1.0e-65 253.8 201 68.7
PGR119G1657 Punica granatum HOM05D006880 ORTHO05D008638 1.7e-65 253.1 196 69.9
C05p46720 Brassica napus HOM05D006880 ORTHO05D008638 3.9e-65 251.9 201 68.2
MBI02_g23402_MAGBIO Magnolia biondii HOM05D006880 ORTHO05D008638 3.9e-65 251.9 178 70.8
AT3G18800 Arabidopsis thaliana HOM05D006880 ORTHO05D008638 8.6e-65 250.8 199 69.3
BcaB06g25933 Brassica carinata HOM05D006880 ORTHO05D008638 1.9e-64 249.6 202 67.8
A05p30800 Brassica napus HOM05D006880 ORTHO05D008638 1.9e-64 249.6 204 67.6
BraA05t21922Z Brassica rapa HOM05D006880 ORTHO05D008638 1.9e-64 249.6 204 67.6
Sp1g36150 Schrenkiella parvula HOM05D006880 ORTHO05D008638 1.9e-64 249.6 179 73.2
Sp3g16890 Schrenkiella parvula HOM05D006880 ORTHO05D008638 5.6e-64 248.1 205 67.3
Sc03g0004730 Simmondsia chinensis HOM05D006880 ORTHO05D008638 5.6e-64 248.1 190 66.3
ATR0772G040 Amborella trichopoda HOM05D006880 ORTHO05D008638 2.8e-63 245.7 179 69.3
CARHR094210 Cardamine hirsuta HOM05D006880 ORTHO05D008638 6.2e-63 244.6 201 67.7
HPP92_025026 Vanilla planifolia HOM05D006880 ORTHO05D008638 3.1e-62 242.3 184 66.3
HPP92_025033 Vanilla planifolia HOM05D006880 ORTHO05D008638 3.1e-62 242.3 184 66.3
Gohir.D11G233000 Gossypium hirsutum HOM05D006880 ORTHO05D008638 3.4e-61 238.8 198 66.7
Nn5g28731 Nelumbo nucifera HOM05D006880 ORTHO05D008638 3.8e-60 235.3 176 67.6
Thhalv10022284m.g Eutrema salsugineum HOM05D006880 ORTHO05D008638 1.9e-59 233.0 204 63.7
CsaV3_6G041940 Cucumis sativus L. HOM05D006880 ORTHO05D008638 1.6e-58 229.9 165 72.1
Dinv09943 Davidia involucrata HOM05D006880 ORTHO05D008638 1.5e-56 223.4 150 75.3
Peaxi162Scf00025g02313 Petunia axillaris HOM05D006880 ORTHO05D008638 1.6e-55 219.9 170 67.6
CDE06G1704 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 1.1e-51 207.2 157 67.5
BcaC07g37070 Brassica carinata HOM05D006880 ORTHO05D008638 8.7e-49 197.6 182 61.0
A08p04110 Brassica napus HOM05D006880 ORTHO05D008638 1.1e-46 190.7 144 67.4
Mapoly0012s0135 Marchantia polymorpha HOM05D006880 ORTHO05D008638 6.9e-46 188.0 179 53.6
SMO351G0309 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 2.4e-43 179.5 178 52.2
AagrBONN_evm.TU.Sc2ySwM_228.250 Anthoceros agrestis HOM05D006880 ORTHO05D008638 1.3e-39 167.2 177 50.3
SMO196G0105 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 2.1e-39 166.4 179 47.5
Nn3g21133 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.2e-37 160.6 176 52.3
Nitab4.5_0011433g0020 Nicotiana tabacum HOM05D006880 ORTHO05D008638 3.4e-37 159.1 111 71.2
Nitab4.5_0023130g0010 Nicotiana tabacum HOM05D006880 ORTHO05D008638 6.5e-36 154.8 111 69.4
DCAR_016722 Daucus carota HOM05D006880 ORTHO05D008638 5.1e-33 145.2 104 68.3
Nn8g40983 Nelumbo nucifera HOM05D006880 ORTHO05D008638 7.6e-29 131.3 174 46.6
Os04g0687200 Oryza sativa ssp. japonica HOM05D006880 ORTHO05D008638 1.7e-28 130.2 125 53.6
Eucgr.B01306 Eucalyptus grandis HOM05D006880 ORTHO05D008638 8.2e-23 111.3 131 48.9
Lj6g0028046 Lotus japonicus HOM05D006880 ORTHO05D008638 1.4e-19 100.5 68 70.6
Eucgr.B00961 Eucalyptus grandis HOM05D006880 ORTHO05D008638 6.5e-12 75.1 54 66.7
Nn3g19205 Nelumbo nucifera HOM05D006880 ORTHO05D008638 2.5e-11 73.2 69 58.0
BraA08t32436Z Brassica rapa HOM05D006880 ORTHO05D008638 3.3e-08 62.8 37 86.5


User provided reference genes

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