Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G111101 Glycine max HOM05D002612 ORTHO05D002859 6.9e-71 270.4 125 100.0
Glyma.02G172700 Glycine max HOM05D002612 ORTHO05D002859 8.0e-43 177.2 103 84.5
Phvul.007G260100 Phaseolus vulgaris HOM05D002612 ORTHO05D002859 2.5e-36 155.6 97 79.4
VMungo0720G2417 Vigna mungo HOM05D005723 ORTHO05D005968 1.4e-34 149.8 114 68.4
arahy.Tifrunner.gnm1.ann1.47DXFL Arachis hypogaea HOM05D002612 ORTHO05D002859 8.3e-32 140.6 100 68.0
arahy.Tifrunner.gnm1.ann1.J786L6 Arachis hypogaea HOM05D002612 ORTHO05D002859 8.3e-32 140.6 100 68.0
VMungo1383G3725 Vigna mungo HOM05D002612 ORTHO05D002859 2.3e-29 132.5 100 67.0
CSS0019314 Camellia sinensis var. sinensis HOM05D002612 ORTHO05D002859 7.3e-28 127.5 105 60.0
CiPaw.10G026200 Carya illinoinensis HOM05D002612 ORTHO05D002859 1.6e-27 126.3 103 61.2
TPR.G32347 Trifolium pratense HOM05D002612 ORTHO05D002859 4.7e-27 124.8 106 58.5
Medtr0015s0110 Medicago truncatula HOM05D002612 ORTHO05D002859 6.1e-27 124.4 112 55.4
Sed0006567 Sechium edule HOM05D002612 ORTHO05D002859 1.8e-26 122.9 107 58.9
Psat6g091240 Pisum sativum HOM05D002612 ORTHO05D002859 6.8e-26 120.9 105 60.0
ClCG10G017560 Citrullus lanatus HOM05D002612 ORTHO05D002859 1.2e-25 120.2 107 58.9
GSVIVG01033493001 Vitis vinifera HOM05D002612 ORTHO05D002859 2.0e-25 119.4 107 58.9
Sed0010869 Sechium edule HOM05D002612 ORTHO05D002859 2.6e-25 119.0 102 59.8
TAR623G0372 Trochodendron aralioides HOM05D002612 ORTHO05D002859 3.4e-25 118.6 106 60.4
Ca_12071_v3 Cicer arietinum L. HOM05D002612 ORTHO05D002859 5.8e-25 117.9 105 58.1
QL07p023812 Quercus lobata HOM05D002612 ORTHO05D002859 2.2e-24 115.9 119 53.8
TWI74G1029 Tripterygium wilfordii HOM05D002612 ORTHO05D002859 4.9e-24 114.8 104 56.7
Phvul.001G142600 Phaseolus vulgaris HOM05D002612 ORTHO05D002859 6.4e-24 114.4 100 61.0
Lalb_Chr18g0047881 Lupinus albus HOM05D002612 ORTHO05D002859 5.4e-23 111.3 100 60.0
Glyma.19G148000 Glycine max HOM05D002612 ORTHO05D002859 9.2e-23 110.5 100 60.0
CsaV3_3G038780 Cucumis sativus L. HOM05D002612 ORTHO05D002859 1.6e-22 109.8 115 52.2
Manes.09G035700 Manihot esculenta HOM05D002612 ORTHO05D002859 4.6e-22 108.2 101 59.4
MELO3C009622.2 Cucumis melo HOM05D002612 ORTHO05D002859 6.0e-22 107.8 115 53.0
Duzib106G0243 Durio zibethinus HOM05D002612 ORTHO05D002859 6.0e-22 107.8 103 52.4
Sabra06G0147900 Salix brachista HOM05D002612 ORTHO05D002859 1.3e-21 106.7 97 56.7
Lj5g0018767 Lotus japonicus HOM05D002612 ORTHO05D002859 2.3e-21 105.9 104 54.8
MD14G1056500 Malus domestica HOM05D002612 ORTHO05D002859 6.6e-21 104.4 100 57.0
CAN.G570.9 Capsicum annuum HOM05D002612 ORTHO05D002859 1.1e-20 103.6 99 53.5
Gohir.A09G128100 Gossypium hirsutum HOM05D002612 ORTHO05D002859 1.1e-20 103.6 112 49.1
Aqoxy2G00058 Aquilegia oxysepala HOM05D002612 ORTHO05D002859 1.5e-20 103.2 104 53.8
Peaxi162Scf00258g00631 Petunia axillaris HOM05D002612 ORTHO05D002859 4.3e-20 101.7 99 52.5
COL.COLO4_33978 Corchorus olitorius HOM05D005723 ORTHO05D005968 5.6e-20 101.3 103 52.4
Gorai.006G142900 Gossypium raimondii HOM05D002612 ORTHO05D002859 9.5e-20 100.5 112 47.3
Sabra16G0049300 Salix brachista HOM05D002612 ORTHO05D002859 9.5e-20 100.5 101 53.5
Gohir.D09G124100 Gossypium hirsutum HOM05D002612 ORTHO05D002859 2.8e-19 99.0 112 46.4
PGR142G1191 Punica granatum HOM05D002612 ORTHO05D002859 2.8e-19 99.0 109 49.5
Solyc03g063350.3 Solanum lycopersicum HOM05D002612 ORTHO05D002859 2.8e-19 99.0 97 49.5
Sopen03g016040 Solanum pennellii HOM05D002612 ORTHO05D002859 2.8e-19 99.0 97 49.5
MBI06_g15023_MAGBIO Magnolia biondii HOM05D002612 ORTHO05D002859 4.7e-19 98.2 98 55.1
Rhsim03G0005800 Rhododendron simsii HOM05D002612 ORTHO05D002859 4.7e-19 98.2 108 49.1
Nn2g15693 Nelumbo nucifera HOM05D002612 ORTHO05D002859 6.2e-19 97.8 106 50.0
Lsat_1_v5_gn_5_163560 Lactuca sativa HOM05D002612 ORTHO05D002859 1.1e-18 97.1 100 50.0
PGSC0003DMG400019954 Solanum tuberosum HOM05D002612 ORTHO05D002859 1.8e-18 96.3 97 48.5
Cc06_g15900 Coffea canephora HOM05D002612 ORTHO05D002859 1.2e-17 93.6 98 54.1
Thecc.05G171700 Theobroma cacao HOM05D002612 ORTHO05D002859 1.5e-17 93.2 98 52.0
Nitab4.5_0000324g0010 Nicotiana tabacum HOM05D002612 ORTHO05D002859 2.6e-17 92.4 99 49.5
Hma1.2p1_0676F.1_g201950 Hydrangea macrophylla HOM05D002612 ORTHO05D002859 5.8e-17 91.3 102 46.1
Nitab4.5_0002488g0060 Nicotiana tabacum HOM05D002612 ORTHO05D002859 5.8e-17 91.3 99 48.5
MSTRG.19906 Avicennia marina HOM05D002612 ORTHO05D002859 1.3e-16 90.1 106 46.2
FAN09G3207 Fragaria x ananassa HOM05D002612 ORTHO05D002859 2.9e-16 89.0 102 49.0
Eucgr.K01842 Eucalyptus grandis HOM05D002612 ORTHO05D002859 1.4e-15 86.7 105 43.8
Cfa020162 Carpinus fangiana HOM05D002612 ORTHO05D002859 2.4e-15 85.9 102 48.0
Sc13g0002290 Simmondsia chinensis HOM05D002612 ORTHO05D002859 7.0e-15 84.3 97 48.5
Duzib128G1439 Durio zibethinus HOM05D002612 ORTHO05D002859 9.2e-15 84.0 105 45.7
EL10Ac3g06912 Beta vulgaris HOM05D002612 ORTHO05D002859 1.6e-14 83.2 103 45.6
CANSAT64G1369 Cannabis sativa HOM05D002612 ORTHO05D002859 2.7e-14 82.4 99 50.5
Hund19204 Selenicereus undatus HOM05D002612 ORTHO05D002859 2.7e-14 82.4 93 52.7
Oeu033736.1 Olea europaea HOM05D002612 ORTHO05D002859 1.3e-13 80.1 108 45.4
RcHm_v2.0_Chr3g0479541 Rosa chinensis HOM05D002612 ORTHO05D002859 1.7e-13 79.7 107 43.9
Aa31LG1G24120 Aethionema arabicum HOM05D002612 ORTHO05D002859 2.3e-13 79.3 113 42.5
HanXRQChr01g0009751 Helianthus annuus HOM05D002612 ORTHO05D002859 3.9e-13 78.6 106 43.4
Atru.chr8.1116 Acer truncatum HOM05D002612 ORTHO05D002859 5.1e-13 78.2 113 45.1
AUR62012027 Chenopodium quinoa HOM05D002612 ORTHO05D002859 1.1e-12 77.0 106 43.4
Prupe.7G077400 Prunus persica HOM05D002612 ORTHO05D002859 1.1e-12 77.0 93 47.3
Dinv24067 Davidia involucrata HOM05D002612 ORTHO05D002859 1.9e-12 76.3 100 44.0
AUR62015364 Chenopodium quinoa HOM05D002612 ORTHO05D002859 2.5e-12 75.9 110 41.8
AL4G40440 Arabidopsis lyrata HOM05D002612 ORTHO05D002859 1.2e-11 73.6 113 42.5
HPP92_022664 Vanilla planifolia HOM05D002612 ORTHO05D002859 1.2e-11 73.6 103 40.8
THA.LOC104802604 Tarenaya hassleriana HOM05D002612 ORTHO05D002859 1.6e-11 73.2 113 43.4
BcaNung04409 Brassica carinata HOM05D002612 ORTHO05D002859 2.1e-11 72.8 114 41.2
FvH4_6g22210 Fragaria vesca HOM05D002612 ORTHO05D002859 2.1e-11 72.8 102 43.1
BraA05t19264Z Brassica rapa HOM05D002612 ORTHO05D002859 2.8e-11 72.4 112 43.8
FAN14G3252 Fragaria x ananassa HOM05D002612 ORTHO05D002859 2.8e-11 72.4 102 43.1
Carub.0004s2442 Capsella rubella HOM05D002612 ORTHO05D002859 3.6e-11 72.0 117 41.9
Migut.J01834 Erythranthe guttata HOM05D002612 ORTHO05D002859 3.6e-11 72.0 107 42.1
ATR0807G015 Amborella trichopoda HOM05D002612 ORTHO05D002859 4.7e-11 71.6 104 43.3
SGA_v2.0_scaffold105G30491 Striga asiatica HOM05D002612 ORTHO05D002859 6.2e-11 71.2 97 41.2
A05p02720 Brassica napus HOM05D002612 ORTHO05D002859 8.1e-11 70.9 116 43.1
Cpa.g.sc85.63 Carica papaya HOM05D002612 ORTHO05D002859 1.4e-10 70.1 97 44.3
BcaC02g12457 Brassica carinata HOM05D002612 ORTHO05D002859 4.0e-10 68.6 119 42.0
C04p03250 Brassica napus HOM05D002612 ORTHO05D002859 4.0e-10 68.6 119 42.0
BolC4t21963H Brassica oleracea HOM05D002612 ORTHO05D002859 4.0e-10 68.6 119 42.0
Sp4g24300 Schrenkiella parvula HOM05D002612 ORTHO05D002859 4.0e-10 68.6 115 42.6
Ah.04g152500 Amaranthus hybridus HOM05D005723 ORTHO05D005968 1.2e-09 67.0 113 36.3
DCAR_013544 Daucus carota HOM05D002612 ORTHO05D002859 1.2e-09 67.0 100 38.0
SGA_v2.0_scaffold37G14819 Striga asiatica HOM05D002612 ORTHO05D002859 2.0e-09 66.2 98 39.8
AT2G42080 Arabidopsis thaliana HOM05D002612 ORTHO05D002859 3.7e-08 62.0 110 38.2
Ciclev10012465m.g Citrus clementina HOM05D002612 ORTHO05D002859 3.7e-08 62.0 115 40.9
BcaB06g29225 Brassica carinata HOM05D002612 ORTHO05D002859 6.4e-08 61.2 113 35.4
ECA248G2814 Erigeron canadensis HOM05D000267 ORTHO05D000298 6.4e-08 61.2 100 40.0
SalBow6G0399 Salvia bowleyana HOM05D002612 ORTHO05D002859 8.3e-08 60.8 106 39.6
SalBow6G1620 Salvia bowleyana HOM05D002612 ORTHO05D002859 8.3e-08 60.8 106 39.6
CARHR137160 Cardamine hirsuta HOM05D002612 ORTHO05D002859 1.1e-07 60.5 114 40.4
Os07g0470800 Oryza sativa ssp. japonica HOM05D002612 ORTHO05D002859 1.4e-07 60.1 104 37.5
FAN14G2805 Fragaria x ananassa HOM05D002612 ORTHO05D002859 2.4e-07 59.3 72 44.4
Dinv09944 Davidia involucrata HOM05D002612 ORTHO05D002859 3.2e-07 58.9 96 43.8
TAR381G1391 Trochodendron aralioides HOM05D002612 ORTHO05D002859 7.1e-07 57.8 98 38.8
Zm00001eb320120 Zea mays HOM05D002612 ORTHO05D002859 9.2e-07 57.4 104 38.5
Actinidia22037 Actinidia chinensis HOM05D002612 ORTHO05D002859 1.2e-06 57.0 36 58.3
Dinv15109 Davidia involucrata HOM05D002612 ORTHO05D002859 1.2e-06 57.0 96 42.7
SEGI_04300 Sequoiadendron giganteum HOM05D002612 ORTHO05D002859 2.1e-06 56.2 106 38.7
AL5G39680 Arabidopsis lyrata HOM05D002612 ORTHO05D002859 3.5e-06 55.5 97 38.1
Cc06_g15910 Coffea canephora HOM05D002612 ORTHO05D002859 3.5e-06 55.5 95 38.9
Glyma.04G216300 Glycine max HOM05D002612 ORTHO05D002859 3.5e-06 55.5 103 41.7
Gorai.008G099800 Gossypium raimondii HOM05D002612 ORTHO05D002859 3.5e-06 55.5 103 40.8
Gohir.D12G092200 Gossypium hirsutum HOM05D002612 ORTHO05D002859 6.0e-06 54.7 103 40.8
unitig_699.g19445 Utricularia gibba HOM05D002612 ORTHO05D002859 6.0e-06 54.7 103 35.9
Eucgr.I00248 Eucalyptus grandis HOM05D002612 ORTHO05D002859 7.8e-06 54.3 102 38.2


User provided reference genes

Program Settings