Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 5.6e-185 651.0 372 100.0
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 1.1e-137 493.8 374 80.7
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 1.5e-116 423.7 384 70.6
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 8.0e-107 391.3 378 69.6
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 8.7e-69 265.0 350 51.1
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 1.1e-66 258.1 392 52.8
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 5.3e-66 255.8 391 52.2
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 2.0e-65 253.8 381 50.7
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 3.4e-65 253.1 394 52.8
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 7.1e-63 245.4 375 53.9
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 1.8e-58 230.7 391 43.2
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 7.6e-57 225.3 382 47.6
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 6.4e-56 222.2 392 42.6
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 6.4e-56 222.2 385 46.5
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 1.1e-55 221.5 409 45.0
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 1.1e-55 221.5 389 44.0
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 3.5e-54 216.5 391 41.4
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 1.0e-53 214.9 402 46.3
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 3.9e-53 213.0 393 47.8
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 8.7e-53 211.8 377 43.8
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.5e-52 210.3 403 41.4
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 4.3e-52 209.5 400 41.5
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 9.6e-52 208.4 384 44.3
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.6e-51 207.6 403 41.9
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 8.2e-51 205.3 373 44.2
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 1.4e-50 204.5 432 43.3
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 2.4e-50 203.8 404 41.6
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.4e-50 203.8 402 41.0
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 1.5e-49 201.1 422 39.6
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.5e-49 201.1 378 41.8
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 2.0e-49 200.7 380 41.3
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 1.3e-48 198.0 386 42.2
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.3e-48 198.0 377 39.8
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 1.4e-47 194.5 377 38.7
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 4.2e-47 193.0 381 38.8
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 4.2e-47 193.0 278 48.9
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 1.6e-46 191.0 370 39.5
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 2.1e-46 190.7 368 43.8
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 1.8e-45 187.6 377 39.3
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 1.8e-45 187.6 401 38.7
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 1.1e-44 184.9 410 38.5
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 5.7e-44 182.6 396 40.9
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 1.3e-43 181.4 375 41.6
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 2.2e-43 180.6 384 39.3
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 3.7e-43 179.9 377 39.0
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 1.4e-42 177.9 401 46.6
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 3.1e-42 176.8 378 47.4
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 1.2e-41 174.9 408 38.5
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.2e-41 174.9 386 47.7
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 3.4e-41 173.3 388 37.9
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 3.4e-41 173.3 387 38.5
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 4.5e-41 172.9 378 40.2
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 3.8e-40 169.9 382 42.1
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 7.2e-39 165.6 387 36.4
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 7.2e-39 165.6 378 37.0
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 1.2e-38 164.9 385 40.0
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.6e-38 164.5 387 36.2
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 2.7e-38 163.7 380 41.6
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 3.6e-38 163.3 224 45.5
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 6.1e-38 162.5 297 42.1
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 1.0e-37 161.8 434 42.6
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 1.8e-37 161.0 408 36.8
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 1.8e-37 161.0 296 40.9
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 2.3e-37 160.6 389 36.8
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 1.9e-36 157.5 385 38.4
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 1.9e-36 157.5 240 41.7
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 3.3e-36 156.8 245 58.4
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 7.4e-36 155.6 303 38.0
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 1.4e-34 151.4 146 56.2
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 1.8e-34 151.0 284 40.1
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 4.1e-34 149.8 386 37.8
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 6.9e-34 149.1 298 43.0
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 1.5e-33 147.9 393 33.8
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 5.9e-33 146.0 278 39.9
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 1.3e-32 144.8 297 44.1
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 3.8e-32 143.3 226 48.2
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 6.5e-32 142.5 302 41.1
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 1.1e-31 141.7 368 35.3
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 4.2e-31 139.8 371 34.8
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 1.6e-30 137.9 377 39.0
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 2.1e-30 137.5 151 55.0
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 4.7e-30 136.3 379 36.1
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 4.7e-30 136.3 385 36.1
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 4.7e-30 136.3 148 54.1
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 2.8e-27 127.1 140 51.4
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 4.8e-27 126.3 367 37.3
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.4e-26 124.8 342 36.3
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 3.1e-26 123.6 391 35.8
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 1.2e-25 121.7 272 37.5
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 2.0e-25 120.9 305 32.5
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 4.5e-25 119.8 323 39.0
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 7.7e-25 119.0 368 31.0
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.3e-24 118.2 324 34.6
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 2.2e-24 117.5 363 30.6
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 2.9e-24 117.1 387 33.1
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 1.9e-23 114.4 383 33.7
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 2.5e-23 114.0 335 31.9
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 3.2e-23 113.6 143 51.0
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 3.2e-23 113.6 275 33.8
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.2e-23 113.6 294 38.1
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 4.2e-23 113.2 378 36.0
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 4.2e-23 113.2 142 51.4
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 4.2e-23 113.2 141 49.6
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 5.5e-23 112.8 140 50.7
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 5.5e-23 112.8 417 32.9
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 5.5e-23 112.8 140 45.7
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 7.2e-23 112.5 140 50.7
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 7.2e-23 112.5 331 32.6
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 2.1e-22 110.9 141 49.6
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 2.1e-22 110.9 141 49.6
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 2.1e-22 110.9 385 31.7
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 2.7e-22 110.5 139 51.8
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 6.1e-22 109.4 138 50.0
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 6.1e-22 109.4 148 47.3
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 6.1e-22 109.4 378 32.0
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 8.0e-22 109.0 141 48.9
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 8.0e-22 109.0 136 45.6
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 1.8e-21 107.8 140 50.0
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.8e-21 107.8 137 46.7
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.3e-21 107.5 148 43.2
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 1.1e-20 105.1 388 28.9
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 2.0e-20 104.4 143 45.5
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 2.0e-20 104.4 134 49.3
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 3.3e-20 103.6 132 48.5
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 3.3e-20 103.6 324 34.9
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 4.4e-20 103.2 142 45.8
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 4.4e-20 103.2 130 49.2
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 5.7e-20 102.8 372 29.0
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 5.7e-20 102.8 134 48.5
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 5.7e-20 102.8 134 48.5
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 5.7e-20 102.8 134 48.5
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 7.4e-20 102.4 130 45.4
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.8e-19 100.5 137 43.8
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 3.7e-19 100.1 278 32.0
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 1.4e-18 98.2 364 34.6
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 5.3e-18 96.3 151 45.0
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 5.3e-18 96.3 132 46.2
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 5.3e-18 96.3 97 53.6
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 9.1e-18 95.5 202 41.6
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 9.1e-18 95.5 158 42.4
TPR.G16984 Trifolium pratense HOM05D003648 ORTHO05D004267 1.2e-17 95.1 88 60.2
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 2.0e-17 94.4 128 46.1
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.0e-17 94.4 109 45.9
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.6e-17 94.0 201 41.3
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 7.7e-17 92.4 65 67.7
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 1.0e-16 92.0 121 47.9
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.3e-16 91.7 337 30.6
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.2e-16 90.9 59 71.2
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 2.9e-16 90.5 147 44.2
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 2.5e-15 87.4 128 44.5
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 5.5e-15 86.3 127 44.9
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 7.2e-15 85.9 63 68.3
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 1.6e-14 84.7 86 53.5
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 1.6e-14 84.7 86 53.5
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 2.7e-14 84.0 41 87.8
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 8.0e-14 82.4 242 33.9
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 6.7e-13 79.3 49 73.5
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 9.7e-12 75.5 54 63.0
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 1.4e-10 71.6 203 28.6
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.4e-10 70.9 42 71.4
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 4.1e-10 70.1 47 66.0
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 9.1e-10 68.9 273 28.6
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.2e-09 68.6 57 57.9
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.2e-09 68.6 81 45.7
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.6e-09 68.2 62 56.5
Ca_08528_v3 Cicer arietinum L. HOM05D003648 ORTHO05D004267 2.7e-09 67.4 86 52.3
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 9.4e-07 58.9 37 62.2
QL07p024250 Quercus lobata HOM05D046221 ORTHO05D014310 1.2e-06 58.5 219 27.9
Manes.08G044100 Manihot esculenta HOM05D014635 ORTHO05D014310 4.7e-06 56.6 172 27.3
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 8.0e-06 55.8 252 23.4


User provided reference genes

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