Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G107433 Glycine max HOM05D002090 ORTHO05D014779 1.5e-109 399.4 192 100.0
Glyma.09G126850 Glycine max HOM05D002090 ORTHO05D001923 2.2e-44 183.0 101 85.1
Glyma.13G025000 Glycine max HOM05D002090 ORTHO05D001923 7.2e-27 124.8 185 35.1
Glyma.03G083300 Glycine max HOM05D002090 ORTHO05D001923 1.6e-26 123.6 174 37.9
Glyma.07G214000 Glycine max HOM05D002090 ORTHO05D001923 3.6e-26 122.5 194 33.0
Glyma.06G126350 Glycine max HOM05D002090 ORTHO05D001923 4.7e-26 122.1 156 41.7
Glyma.09G106000 Glycine max HOM05D002090 ORTHO05D001923 4.7e-26 122.1 181 34.3
Glyma.19G107800 Glycine max HOM05D002090 ORTHO05D001923 6.1e-26 121.7 184 34.8
Glyma.02G178600 Glycine max HOM05D002090 ORTHO05D001923 1.8e-25 120.2 180 34.4
Glyma.18G142200 Glycine max HOM05D002090 ORTHO05D001923 8.8e-25 117.9 176 35.2
Glyma.15G235800 Glycine max HOM05D002090 ORTHO05D001923 2.6e-24 116.3 179 34.6
Glyma.09G080300 Glycine max HOM05D002090 ORTHO05D001923 3.4e-24 115.9 179 36.3
Glyma.17G216450 Glycine max HOM05D002090 ORTHO05D001923 9.8e-24 114.4 179 34.1
Glyma.03G056600 Glycine max HOM05D002090 ORTHO05D001923 3.7e-23 112.5 180 34.4
Medtr5g053590 Medicago truncatula HOM05D002090 ORTHO05D001923 6.3e-23 111.7 173 36.4
Glyma.03G121900 Glycine max HOM05D002090 ORTHO05D001923 1.8e-22 110.2 172 33.1
Glyma.20G053800 Glycine max HOM05D002090 ORTHO05D001923 4.1e-22 109.0 166 36.1
TPR.G10894 Trifolium pratense HOM05D002090 ORTHO05D001923 9.1e-22 107.8 173 35.3
Glyma.04G181700 Glycine max HOM05D002090 ORTHO05D001923 1.2e-21 107.5 179 32.4
VMungo0540G0980 Vigna mungo HOM05D002090 ORTHO05D001923 5.0e-20 102.1 169 33.1
Glyma.11G178600 Glycine max HOM05D002090 ORTHO05D001923 6.6e-20 101.7 186 31.2
Medtr3g055660 Medicago truncatula HOM05D002090 ORTHO05D001923 1.9e-19 100.1 171 31.6
Medtr4g014890 Medicago truncatula HOM05D002090 ORTHO05D001923 2.5e-19 99.8 171 31.6
Glyma.08G253400 Glycine max HOM05D002090 ORTHO05D001923 5.5e-19 98.6 183 30.6
Medtr6g059860 Medicago truncatula HOM05D002090 ORTHO05D001923 1.2e-18 97.4 171 31.0
Glyma.07G223800 Glycine max HOM05D002090 ORTHO05D001923 1.6e-18 97.1 176 33.5
Medtr5g004860 Medicago truncatula HOM05D002090 ORTHO05D001923 1.6e-18 97.1 182 34.1
Medtr5g041170 Medicago truncatula HOM05D002090 ORTHO05D001923 1.0e-17 94.4 185 33.5
Glyma.13G028600 Glycine max HOM05D002090 ORTHO05D001923 1.4e-17 94.0 177 29.9
Lalb_Chr25g0280991 Lupinus albus HOM05D002090 ORTHO05D001923 1.4e-17 94.0 181 29.3
Medtr0003s0290 Medicago truncatula HOM05D002090 ORTHO05D001923 1.4e-17 94.0 178 33.7
Glyma.20G069000 Glycine max HOM05D017635 ORTHO05D014779 3.0e-17 92.8 145 32.4
Medtr7g450880 Medicago truncatula HOM05D002090 ORTHO05D001923 3.0e-17 92.8 178 34.3
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 4.0e-17 92.4 176 31.8
Glyma.13G029300 Glycine max HOM05D002090 ORTHO05D001923 1.5e-16 90.5 183 29.0
SGA_v2.0_scaffold53G19410 Striga asiatica HOM05D002090 ORTHO05D000174 2.0e-16 90.1 175 29.7
TPR.G14233 Trifolium pratense HOM05D000096 ORTHO05D000045 2.6e-16 89.7 168 29.2
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 3.4e-16 89.4 167 29.3
Lsat_1_v5_gn_7_8760 Lactuca sativa HOM05D009063 ORTHO05D011082 9.8e-16 87.8 174 30.5
Medtr6g055250 Medicago truncatula HOM05D002090 ORTHO05D001923 1.7e-15 87.0 181 33.1
Lsat_1_v5_gn_5_64801 Lactuca sativa HOM05D009063 ORTHO05D011082 2.2e-15 86.7 174 29.9
Glyma.16G114500 Glycine max HOM05D002090 ORTHO05D001923 2.8e-15 86.3 150 32.0
SGA_v2.0_scaffold106G30698 Striga asiatica HOM05D000353 ORTHO05D000174 3.7e-15 85.9 173 29.5
TPR.G17441 Trifolium pratense HOM05D002090 ORTHO05D001923 3.7e-15 85.9 192 29.7
TPR.G21912 Trifolium pratense HOM05D000096 ORTHO05D000045 3.7e-15 85.9 192 29.7
HanXRQChr09g0260311 Helianthus annuus HOM05D000353 ORTHO05D000174 4.9e-15 85.5 158 32.3
Medtr1g043690 Medicago truncatula HOM05D002090 ORTHO05D001923 8.3e-15 84.7 171 31.6
Glyma.20G065700 Glycine max HOM05D002090 ORTHO05D001923 2.4e-14 83.2 179 30.2
Medtr4g085760 Medicago truncatula HOM05D002090 ORTHO05D001923 2.4e-14 83.2 168 28.6
ECA232G0261 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.1e-14 82.4 158 32.3
Glyma.02G161500 Glycine max HOM05D002090 ORTHO05D001923 5.4e-14 82.0 158 32.9
ECA247G4094 Erigeron canadensis HOM05D000353 ORTHO05D000174 7.0e-14 81.6 163 30.7
TPR.G13259 Trifolium pratense HOM05D002090 ORTHO05D001923 1.2e-13 80.9 177 25.4
ECA248G1544 Erigeron canadensis HOM05D000096 ORTHO05D000045 1.6e-13 80.5 153 30.1
Psat1g008280 Pisum sativum HOM05D002090 ORTHO05D001923 2.0e-13 80.1 162 29.6
EL10Ac7g16273 Beta vulgaris HOM05D000353 ORTHO05D000174 5.9e-13 78.6 175 27.4
ECA246G4325 Erigeron canadensis HOM05D000353 ORTHO05D000174 5.9e-13 78.6 160 30.6
Glyma.18G095500 Glycine max HOM05D017635 ORTHO05D014779 1.3e-12 77.4 131 30.5
TPR.G37532 Trifolium pratense HOM05D002090 ORTHO05D001923 1.3e-12 77.4 177 29.9
Glyma.15G206600 Glycine max HOM05D002090 ORTHO05D001923 3.8e-12 75.9 150 32.7
C02p33390 Brassica napus HOM05D000353 ORTHO05D015401 6.6e-12 75.1 176 28.4
Lj1g0016702 Lotus japonicus HOM05D007499 ORTHO05D000174 8.6e-12 74.7 181 27.6
C05p29470 Brassica napus HOM05D009574 ORTHO05D000174 1.9e-11 73.6 176 29.5
BolC5t31677H Brassica oleracea HOM05D009574 ORTHO05D000174 1.9e-11 73.6 176 29.5
TPR.G27579 Trifolium pratense HOM05D007499 ORTHO05D009491 1.9e-11 73.6 177 27.7
ECA246G2956 Erigeron canadensis HOM05D000353 ORTHO05D000174 2.5e-11 73.2 158 29.1
Glyma.16G136800 Glycine max HOM05D017635 ORTHO05D014779 2.5e-11 73.2 127 32.3
Lalb_Chr02g0157091 Lupinus albus HOM05D002090 ORTHO05D001923 7.3e-11 71.6 116 35.3
BolC5t33123H Brassica oleracea HOM05D000353 ORTHO05D015401 9.5e-11 71.2 176 27.8
ECA238G1832 Erigeron canadensis HOM05D000096 ORTHO05D000045 2.1e-10 70.1 176 25.6
ECA238G3300 Erigeron canadensis HOM05D003964 ORTHO05D000174 3.6e-10 69.3 155 27.7
HanXRQChr03g0084461 Helianthus annuus HOM05D003964 ORTHO05D000174 3.6e-10 69.3 162 26.5
ECA240G2532 Erigeron canadensis HOM05D003964 ORTHO05D000174 6.1e-10 68.6 155 30.3
Glyma.16G086800 Glycine max HOM05D017635 ORTHO05D014779 6.1e-10 68.6 118 33.9
HanXRQChr12g0361281 Helianthus annuus HOM05D003964 ORTHO05D000174 1.0e-09 67.8 162 25.9
Medtr0048s0080 Medicago truncatula HOM05D008036 ORTHO05D000174 1.0e-09 67.8 173 27.2
TPR.G21729 Trifolium pratense HOM05D003813 ORTHO05D004557 1.0e-09 67.8 168 23.2
Lj3g0021994 Lotus japonicus HOM05D002090 ORTHO05D001923 1.4e-09 67.4 65 47.7
Glyma.15G243900 Glycine max HOM05D002090 ORTHO05D001923 1.8e-09 67.0 89 40.4
ECA240G4108 Erigeron canadensis HOM05D003964 ORTHO05D002376 2.3e-09 66.6 139 31.7
Glyma.11G174700 Glycine max HOM05D002090 ORTHO05D001923 4.0e-09 65.9 51 54.9
Glyma.13G075500 Glycine max HOM05D002090 ORTHO05D001923 6.8e-09 65.1 182 27.5
ECA234G0608 Erigeron canadensis HOM05D000615 ORTHO05D000447 8.9e-09 64.7 156 29.5
ECA238G2404 Erigeron canadensis HOM05D000353 ORTHO05D000174 1.2e-08 64.3 158 27.8
Lj2g0011029 Lotus japonicus HOM05D000353 ORTHO05D000174 1.2e-08 64.3 150 28.7
Lalb_Chr12g0196301 Lupinus albus HOM05D002090 ORTHO05D001923 1.2e-08 64.3 103 34.0
Lalb_Chr12g0196321 Lupinus albus HOM05D002090 ORTHO05D001923 1.2e-08 64.3 83 37.3
arahy.Tifrunner.gnm1.ann1.5G8KYG Arachis hypogaea HOM05D000353 ORTHO05D000174 2.0e-08 63.5 172 29.1
Lsat_1_v5_gn_1_2141 Lactuca sativa HOM05D009063 ORTHO05D011082 2.0e-08 63.5 126 29.4
Lalb_Chr05g0227951 Lupinus albus HOM05D002090 ORTHO05D001923 2.0e-08 63.5 92 37.0
SGA_v2.0_scaffold49G18365 Striga asiatica HOM05D024561 ORTHO05D002376 2.0e-08 63.5 164 24.4
arahy.Tifrunner.gnm1.ann1.A8IEE6 Arachis hypogaea HOM05D000353 ORTHO05D000174 2.6e-08 63.2 172 28.5
arahy.Tifrunner.gnm1.ann1.GIN4EI Arachis hypogaea HOM05D000353 ORTHO05D000174 2.6e-08 63.2 172 28.5
TPR.G5052 Trifolium pratense HOM05D000096 ORTHO05D000045 2.6e-08 63.2 168 22.0
arahy.Tifrunner.gnm1.ann1.DGZ9BS Arachis hypogaea HOM05D000353 ORTHO05D000174 4.4e-08 62.4 172 28.5
Glyma.05G078800 Glycine max HOM05D002090 ORTHO05D001923 4.4e-08 62.4 73 35.6
arahy.Tifrunner.gnm1.ann1.M21JEJ Arachis hypogaea HOM05D002441 ORTHO05D002376 5.8e-08 62.0 165 30.3
Glyma.13G082501 Glycine max HOM05D002090 ORTHO05D001923 5.8e-08 62.0 116 30.2
Lj1g0002106 Lotus japonicus HOM05D024106 ORTHO05D002376 7.5e-08 61.6 117 30.8
LjContig00141g0021501 Lotus japonicus HOM05D024106 ORTHO05D002376 7.5e-08 61.6 117 30.8
Lj3g0027323 Lotus japonicus HOM05D024106 ORTHO05D002376 9.8e-08 61.2 125 30.4
Medtr1g054840 Medicago truncatula HOM05D002090 ORTHO05D001923 9.8e-08 61.2 107 35.5
TPR.G626 Trifolium pratense HOM05D002090 ORTHO05D001923 9.8e-08 61.2 79 39.2
arahy.Tifrunner.gnm1.ann1.RS3EFR Arachis hypogaea HOM05D000353 ORTHO05D000174 1.3e-07 60.8 172 27.9
Lalb_Chr11g0064711 Lupinus albus HOM05D002090 ORTHO05D001923 1.3e-07 60.8 79 38.0
Glyma.01G057700 Glycine max HOM05D002090 ORTHO05D001923 1.7e-07 60.5 42 57.1
Medtr1g052715 Medicago truncatula HOM05D008036 ORTHO05D000174 1.7e-07 60.5 97 32.0
arahy.Tifrunner.gnm1.ann1.HMM5RD Arachis hypogaea HOM05D000353 ORTHO05D000174 2.9e-07 59.7 157 29.3
HanXRQChr17g0556341 Helianthus annuus HOM05D007823 ORTHO05D000174 2.9e-07 59.7 191 24.1
arahy.Tifrunner.gnm1.ann1.Y0MAT2 Arachis hypogaea HOM05D002441 ORTHO05D002376 3.7e-07 59.3 180 27.2
ECA234G2462 Erigeron canadensis HOM05D000096 ORTHO05D000045 3.7e-07 59.3 155 27.7
arahy.Tifrunner.gnm1.ann1.3QWG3L Arachis hypogaea HOM05D000353 ORTHO05D000174 4.9e-07 58.9 155 29.7
BraA10t43654Z Brassica rapa HOM05D000353 ORTHO05D015401 1.1e-06 57.8 76 35.5
ECA248G0780 Erigeron canadensis HOM05D000353 ORTHO05D000174 1.1e-06 57.8 151 28.5
Glyma.14G126950 Glycine max HOM05D017635 ORTHO05D014779 1.1e-06 57.8 82 30.5
arahy.Tifrunner.gnm1.ann1.8R9H6F Arachis hypogaea HOM05D002441 ORTHO05D002376 1.4e-06 57.4 165 27.9
HanXRQChr05g0143541 Helianthus annuus HOM05D003964 ORTHO05D000174 1.9e-06 57.0 145 26.2
Lsat_1_v5_gn_4_167801 Lactuca sativa HOM05D009063 ORTHO05D011082 1.9e-06 57.0 97 35.1
Medtr5g064590 Medicago truncatula HOM05D002090 ORTHO05D001923 1.9e-06 57.0 106 34.0
BraA10t42858Z Brassica rapa HOM05D000353 ORTHO05D015401 2.4e-06 56.6 76 34.2
HanXRQChr02g0033321 Helianthus annuus HOM05D003964 ORTHO05D000174 2.4e-06 56.6 149 24.8
arahy.Tifrunner.gnm1.ann1.HXT0UR Arachis hypogaea HOM05D000353 ORTHO05D000174 3.2e-06 56.2 172 26.7
DCAR_031592 Daucus carota HOM05D002907 ORTHO05D000065 3.2e-06 56.2 168 22.6
HanXRQChr14g0452311 Helianthus annuus HOM05D003964 ORTHO05D000174 3.2e-06 56.2 144 28.5
Lsat_1_v5_gn_7_113640 Lactuca sativa HOM05D007823 ORTHO05D000174 4.1e-06 55.8 157 24.8
HanXRQChr07g0205571 Helianthus annuus HOM05D003964 ORTHO05D000174 5.4e-06 55.5 145 26.2
Lsat_1_v5_gn_1_124241 Lactuca sativa HOM05D007823 ORTHO05D000174 5.4e-06 55.5 159 28.3
Medtr8g027910 Medicago truncatula HOM05D002090 ORTHO05D001923 7.0e-06 55.1 72 37.5


User provided reference genes

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