Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 6.7e-152 540.8 306 100.0
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 2.9e-147 525.4 306 90.8
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 2.4e-141 505.8 306 82.0
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 4.4e-135 485.0 306 78.4
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 4.5e-132 474.9 299 77.9
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 2.8e-129 465.7 312 74.7
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 4.5e-124 448.4 304 80.6
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 5.6e-122 441.4 306 84.0
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 6.1e-121 438.0 304 73.4
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 2.3e-120 436.0 307 84.0
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 3.1e-120 435.6 304 81.2
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 6.8e-120 434.5 307 83.7
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 3.4e-119 432.2 307 79.2
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 7.0e-117 424.5 305 77.0
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 4.6e-116 421.8 304 70.7
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 7.8e-116 421.0 308 68.5
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.3e-115 419.5 304 80.3
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 3.0e-115 419.1 307 74.9
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 3.0e-115 419.1 308 79.5
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 3.9e-115 418.7 304 78.9
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 7.3e-114 414.5 309 78.6
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 7.3e-114 414.5 306 78.1
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 9.5e-114 414.1 311 79.1
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 3.6e-113 412.1 307 75.6
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 4.7e-113 411.8 306 72.2
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 8.0e-113 411.0 307 75.9
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 4.0e-112 408.7 305 77.7
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 6.8e-112 407.9 306 80.1
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 8.9e-112 407.5 307 76.5
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 1.5e-111 406.8 305 80.7
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 1.5e-111 406.8 309 68.9
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 2.0e-111 406.4 305 78.4
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 4.4e-111 405.2 309 68.3
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 5.8e-111 404.8 307 73.6
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 5.8e-111 404.8 305 75.4
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 7.5e-111 404.4 309 68.6
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 7.5e-111 404.4 308 73.7
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 3.7e-110 402.1 309 68.6
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 4.9e-110 401.7 308 75.3
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 1.1e-109 400.6 309 67.3
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 1.9e-109 399.8 306 76.8
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 3.2e-109 399.1 315 66.3
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 3.2e-109 399.1 304 75.7
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 7.0e-109 397.9 307 76.9
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 7.0e-109 397.9 257 78.6
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 9.2e-109 397.5 307 73.0
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 2.7e-108 396.0 310 69.4
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 6.0e-108 394.8 309 75.7
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 7.8e-108 394.4 320 70.0
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 7.8e-108 394.4 264 85.6
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 7.8e-108 394.4 305 72.1
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 1.0e-107 394.0 307 69.1
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 2.3e-107 392.9 316 73.7
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 3.9e-107 392.1 313 75.4
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 6.6e-107 391.3 273 82.8
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.5e-106 389.4 310 78.1
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 7.3e-106 387.9 310 64.5
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 9.5e-106 387.5 306 74.5
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 1.2e-105 387.1 308 64.3
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 2.1e-105 386.3 308 64.3
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 3.6e-105 385.6 308 64.6
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 3.6e-105 385.6 308 75.6
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 1.4e-104 383.6 306 68.3
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.8e-104 383.3 308 64.0
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.8e-104 383.3 305 65.2
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 8.9e-104 380.9 307 75.6
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.5e-103 380.2 308 63.3
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 1.3e-102 377.1 318 69.2
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 1.3e-102 377.1 312 73.4
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 1.7e-102 376.7 309 72.5
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 2.2e-102 376.3 308 70.5
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 6.4e-102 374.8 311 65.6
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.4e-101 372.9 312 68.3
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 4.1e-101 372.1 307 61.9
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 2.1e-100 369.8 318 68.2
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 2.1e-100 369.8 307 69.4
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 2.1e-100 369.8 281 77.2
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 4.6e-100 368.6 284 73.9
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 6.0e-100 368.2 308 61.7
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 1.7e-99 366.7 320 71.2
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.5e-98 363.6 320 71.9
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 2.5e-98 362.8 307 74.6
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 9.5e-98 360.9 319 71.5
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 2.1e-97 359.8 338 68.0
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 2.8e-97 359.4 306 65.0
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 8.1e-97 357.8 341 56.6
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 3.1e-96 355.9 287 76.7
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 1.5e-95 353.6 306 67.0
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 1.5e-95 353.6 307 73.9
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 2.9e-94 349.4 355 59.2
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 2.9e-94 349.4 355 59.2
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 2.1e-92 343.2 281 74.4
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 3.5e-92 342.4 307 72.6
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 1.0e-91 340.9 308 58.1
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 2.8e-89 332.8 337 55.2
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 6.9e-88 328.2 285 73.3
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 1.2e-87 327.4 349 59.6
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 1.2e-87 327.4 349 59.6
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.0e-87 326.6 256 80.1
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 7.6e-87 324.7 306 55.9
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 7.6e-87 324.7 256 79.7
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 1.7e-86 323.6 324 62.3
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.2e-86 323.2 311 65.6
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 2.4e-85 319.7 308 56.8
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 1.5e-82 310.5 241 79.7
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 1.9e-82 310.1 305 64.3
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 2.8e-81 306.2 271 60.1
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 7.6e-79 298.1 262 59.9
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.4e-77 293.9 214 78.5
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 3.2e-77 292.7 214 79.9
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 1.1e-74 284.3 296 52.4
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 2.5e-74 283.1 232 64.7
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.5e-71 273.9 233 75.5
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 5.8e-71 271.9 232 64.2
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 3.8e-70 269.2 233 74.2
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 6.4e-70 268.5 249 58.6
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 8.4e-70 268.1 234 76.1
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 1.4e-69 267.3 189 88.9
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 3.1e-64 249.6 231 71.9
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 9.0e-64 248.1 244 65.6
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 3.4e-63 246.1 236 57.2
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 1.3e-62 244.2 239 71.5
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 3.8e-62 242.7 214 73.4
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 3.2e-61 239.6 296 49.7
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 9.3e-61 238.0 236 71.2
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 3.9e-59 232.6 232 70.7
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 7.4e-58 228.4 127 83.5
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 1.2e-55 221.1 241 52.7
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 3.6e-52 209.5 233 51.9
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 3.6e-52 209.5 233 51.9
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 3.0e-51 206.5 246 65.0
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 1.7e-49 200.7 294 41.8
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 1.1e-48 198.0 323 48.3
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 1.4e-45 187.6 299 39.1
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 5.1e-43 179.1 243 55.6
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 6.7e-43 178.7 233 56.7
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.0e-38 164.9 145 71.0
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 1.3e-38 164.5 316 33.9
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 1.5e-37 161.0 244 44.7
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 8.0e-36 155.2 149 73.8
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 1.1e-34 151.4 157 55.4
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.5e-34 151.0 74 86.5
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 7.4e-34 148.7 172 48.8
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 2.9e-30 136.7 73 76.7
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 1.6e-28 131.0 73 80.8
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.4e-27 127.9 156 64.7
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 9.8e-26 121.7 90 66.7
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.7e-25 119.8 122 54.9
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 1.0e-22 111.7 59 76.3
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 7.5e-18 95.5 50 76.0
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 2.8e-17 93.6 126 33.3
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 2.8e-17 93.6 89 57.3
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 2.4e-16 90.5 136 41.2
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 9.1e-16 88.6 101 50.5
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 1.9e-13 80.9 83 55.4
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 3.4e-10 70.1 47 70.2
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 3.4e-10 70.1 47 70.2
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 1.4e-08 64.7 100 38.0


User provided reference genes

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