Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 5.3e-304 1047.0 557 100.0
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 9.7e-282 973.0 557 93.4
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 1.5e-258 896.0 561 87.0
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 5.7e-250 867.5 562 83.8
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 2.9e-238 828.6 563 79.8
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 1.3e-233 813.1 560 78.6
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 3.7e-233 811.6 553 79.2
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 4.6e-231 804.7 570 78.4
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 1.0e-230 803.5 569 78.2
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 1.6e-228 796.2 553 76.9
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 5.8e-218 761.1 573 72.8
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 9.9e-210 733.8 558 72.6
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 3.4e-194 682.2 553 68.7
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 8.7e-190 667.5 561 65.4
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 4.8e-188 661.8 558 66.7
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 1.8e-187 659.8 567 64.7
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 6.9e-187 657.9 546 65.6
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 1.2e-186 657.1 557 66.4
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 2.6e-186 656.0 570 64.0
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 5.8e-186 654.8 548 64.6
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 9.9e-186 654.1 574 64.8
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 9.9e-186 654.1 555 64.9
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 5.5e-184 648.3 567 64.0
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 7.1e-184 647.9 567 63.8
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 9.3e-184 647.5 568 65.8
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 1.6e-183 646.7 560 63.2
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 2.1e-183 646.4 553 64.7
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 1.3e-182 643.7 552 64.3
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 3.9e-182 642.1 553 64.2
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 3.9e-182 642.1 563 63.8
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 8.1e-180 634.4 561 63.8
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 8.1e-180 634.4 560 62.9
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 1.4e-179 633.6 575 61.7
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 4.0e-179 632.1 564 61.9
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 5.3e-179 631.7 563 62.9
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 6.9e-179 631.3 562 62.3
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 1.5e-178 630.2 554 63.4
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 2.6e-178 629.4 573 61.8
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 7.6e-178 627.9 554 62.1
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 2.9e-177 625.9 568 61.3
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 4.9e-177 625.2 569 61.5
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 2.5e-176 622.9 573 60.0
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 1.6e-175 620.2 550 61.8
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 1.8e-174 616.7 553 62.4
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 1.9e-173 613.2 562 61.6
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 2.8e-172 609.4 562 60.0
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 6.3e-172 608.2 568 59.5
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 5.3e-171 605.1 552 60.7
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 6.9e-171 604.7 550 62.2
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 1.2e-170 604.0 573 59.2
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 1.2e-170 604.0 561 61.0
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 2.6e-170 602.8 582 58.2
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 3.4e-170 602.4 550 61.1
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.5e-170 602.1 578 58.3
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 7.6e-170 601.3 560 59.5
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.0e-169 598.6 562 58.9
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 6.5e-169 598.2 550 58.2
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 1.9e-168 596.7 560 59.6
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 2.5e-168 596.3 553 60.6
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 7.2e-168 594.7 553 59.9
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 7.2e-168 594.7 545 60.9
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.2e-167 594.0 578 58.0
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 1.6e-167 593.6 574 58.9
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 1.0e-166 590.9 558 59.3
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.1e-166 588.6 578 57.6
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 5.1e-166 588.6 560 59.1
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 1.5e-165 587.0 551 59.2
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 3.3e-165 585.9 584 59.8
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 2.4e-163 579.7 560 58.4
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 3.1e-163 579.3 555 58.2
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 1.5e-162 577.0 552 59.2
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 2.6e-162 576.2 548 59.9
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.9e-162 575.1 566 58.3
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 7.7e-162 574.7 666 52.7
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 1.7e-161 573.5 565 54.3
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 2.2e-161 573.2 578 54.0
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.9e-160 570.1 566 57.8
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 3.2e-160 569.3 566 57.8
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 5.5e-160 568.5 558 54.8
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 1.6e-159 567.0 560 54.8
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 3.6e-159 565.8 559 54.9
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 4.6e-159 565.5 559 54.9
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 3.0e-158 562.8 572 54.0
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 3.0e-158 562.8 585 56.2
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 3.9e-158 562.4 578 53.8
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 6.7e-158 561.6 563 54.5
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.1e-157 560.8 566 56.2
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 5.7e-157 558.5 585 55.9
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 9.7e-157 557.8 563 57.4
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 3.7e-156 555.8 551 58.1
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 4.8e-156 555.4 575 52.9
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 8.2e-156 554.7 562 56.4
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 2.4e-155 553.1 578 51.9
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 1.5e-154 550.4 569 57.5
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 2.0e-154 550.1 562 56.0
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 4.5e-154 548.9 556 56.3
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 5.5e-152 542.0 554 56.0
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 3.6e-151 539.3 570 51.8
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 3.7e-148 529.3 569 53.8
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 3.3e-141 506.1 427 65.3
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 4.1e-139 499.2 421 66.0
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 2.9e-137 493.0 544 53.9
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 5.2e-134 482.3 555 54.4
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 1.7e-132 477.2 433 61.2
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 1.3e-129 467.6 550 51.8
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.7e-129 467.2 450 58.4
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.6e-127 459.5 501 54.5
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 2.3e-121 440.3 563 46.0
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 1.9e-120 437.2 572 46.2
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 4.7e-119 432.6 301 74.4
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 2.2e-116 423.7 370 63.2
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.9e-116 422.5 529 50.3
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 2.0e-114 417.2 552 44.6
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 2.5e-112 410.2 281 74.7
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 1.4e-110 404.4 557 44.2
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 3.7e-108 396.4 553 43.8
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 2.0e-106 390.6 554 48.2
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 8.1e-103 378.6 556 41.9
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 5.2e-102 375.9 587 46.7
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 2.0e-101 374.0 386 52.6
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 2.4e-86 323.9 523 41.3
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 5.8e-77 292.7 340 52.1
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 2.7e-74 283.9 312 55.4
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 4.3e-64 250.0 242 55.8
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 9.6e-64 248.8 213 63.4
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.4e-59 235.0 157 73.9
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 5.5e-59 233.0 411 36.7
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 6.0e-58 229.6 496 36.5
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 3.0e-49 200.7 179 62.6
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.6e-47 194.9 141 73.8
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 5.0e-44 183.3 138 69.6
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-43 182.2 322 39.8
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 2.6e-40 171.0 140 62.9
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 8.2e-39 166.0 118 72.9
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 9.1e-38 162.5 118 71.2
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 7.4e-32 142.9 144 54.9
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 1.7e-23 115.2 84 67.9
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 1.8e-22 111.7 291 32.6
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 5.0e-20 103.6 171 40.9
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 8.5e-20 102.8 85 61.2
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 9.8e-16 89.4 240 32.9
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 2.2e-15 88.2 56 71.4
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 7.7e-13 79.7 67 61.2
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.7e-12 78.6 105 47.6
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 3.2e-11 74.3 42 78.6
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 8.0e-10 69.7 48 72.9
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.8e-09 68.6 73 56.2
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 1.5e-08 65.5 167 34.7
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-07 62.4 173 30.6
arahy.Tifrunner.gnm1.ann1.770ATG Arachis hypogaea HOM05D004469 ORTHO05D005429 2.8e-07 61.2 44 65.9
Thecc.08G193600 Theobroma cacao HOM05D004469 ORTHO05D005429 2.8e-07 61.2 49 59.2
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 8.3e-07 59.7 52 59.6
vmacro11088 Vaccinium macrocarpon HOM05D004469 ORTHO05D426737 8.3e-07 59.7 44 63.6
Os04g0644300 Oryza sativa ssp. japonica HOM05D004469 ORTHO05D005429 1.4e-06 58.9 200 33.0
HanXRQChr01g0025721 Helianthus annuus HOM05D004469 ORTHO05D005429 2.4e-06 58.2 43 62.8
RcHm_v2.0_Chr5g0029761 Rosa chinensis HOM05D004469 ORTHO05D005429 5.4e-06 57.0 36 69.4


User provided reference genes

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