Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 1.1e-66 256.5 133 100.0
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 2.0e-60 235.7 133 95.5
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 8.5e-59 230.3 133 93.2
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 3.2e-58 228.4 133 91.7
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 3.6e-57 224.9 133 89.5
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 6.1e-57 224.2 133 89.5
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 1.0e-56 223.4 133 90.2
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 3.9e-56 221.5 133 88.0
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 6.7e-56 220.7 129 88.4
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 6.7e-56 220.7 129 88.4
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 5.7e-55 217.6 133 85.7
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 1.3e-54 216.5 133 86.5
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 2.2e-54 215.7 133 85.0
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 2.8e-54 215.3 133 86.5
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 2.8e-54 215.3 133 86.5
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 3.7e-54 214.9 133 85.7
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 8.2e-54 213.8 134 85.8
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 8.2e-54 213.8 133 85.7
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 8.2e-54 213.8 133 85.7
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 8.2e-54 213.8 133 85.7
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 1.4e-53 213.0 133 84.2
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 1.8e-53 212.6 133 84.2
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 3.1e-53 211.8 134 84.3
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 4.1e-53 211.5 134 84.3
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 6.9e-53 210.7 134 84.3
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 6.9e-53 210.7 133 85.0
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 9.1e-53 210.3 129 83.7
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 9.1e-53 210.3 134 83.6
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 2.0e-52 209.1 131 84.0
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 2.0e-52 209.1 131 84.0
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 2.0e-52 209.1 130 85.4
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 3.4e-52 208.4 129 86.0
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 3.4e-52 208.4 133 82.0
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 3.4e-52 208.4 134 83.6
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 3.4e-52 208.4 134 83.6
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.4e-52 208.4 134 84.3
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 4.5e-52 208.0 134 84.3
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 5.9e-52 207.6 129 82.2
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 5.9e-52 207.6 132 86.4
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 5.9e-52 207.6 134 84.3
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 7.7e-52 207.2 133 82.7
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 1.0e-51 206.8 129 82.2
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 1.0e-51 206.8 133 83.5
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 1.0e-51 206.8 130 83.1
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 1.0e-51 206.8 130 83.1
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 1.0e-51 206.8 134 83.6
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 1.3e-51 206.5 127 82.7
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 1.3e-51 206.5 130 82.3
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 1.7e-51 206.1 133 79.7
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 1.7e-51 206.1 130 82.3
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 1.7e-51 206.1 127 81.9
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 1.7e-51 206.1 135 83.7
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 2.2e-51 205.7 134 82.8
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 2.2e-51 205.7 130 83.8
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 2.2e-51 205.7 130 82.3
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 3.8e-51 204.9 129 82.9
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 5.0e-51 204.5 134 82.8
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 5.0e-51 204.5 134 82.8
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 5.0e-51 204.5 134 82.8
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 5.0e-51 204.5 134 82.8
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 6.5e-51 204.1 137 78.8
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 8.5e-51 203.8 134 82.8
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 1.4e-50 203.0 130 82.3
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 1.9e-50 202.6 136 80.1
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 1.9e-50 202.6 130 80.8
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 1.9e-50 202.6 133 81.2
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 1.9e-50 202.6 133 81.2
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 1.9e-50 202.6 128 82.8
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 1.9e-50 202.6 130 79.2
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 2.5e-50 202.2 133 82.7
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 2.5e-50 202.2 130 81.5
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 2.5e-50 202.2 132 81.1
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 2.5e-50 202.2 134 81.3
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 3.2e-50 201.8 135 83.0
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.2e-50 201.8 134 81.3
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 3.2e-50 201.8 130 81.5
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 4.2e-50 201.4 130 81.5
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 5.5e-50 201.1 130 80.8
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 5.5e-50 201.1 132 82.6
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 7.2e-50 200.7 134 81.3
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 7.2e-50 200.7 134 80.6
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 7.2e-50 200.7 133 81.2
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 9.4e-50 200.3 135 82.2
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 9.4e-50 200.3 135 82.2
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 9.4e-50 200.3 135 82.2
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 9.4e-50 200.3 135 82.2
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 9.4e-50 200.3 127 80.3
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 1.2e-49 199.9 134 79.1
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 1.6e-49 199.5 135 81.5
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 1.6e-49 199.5 135 82.2
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 1.6e-49 199.5 128 81.2
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 2.1e-49 199.1 134 80.6
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 2.1e-49 199.1 134 82.1
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 2.7e-49 198.7 133 81.2
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 2.7e-49 198.7 128 81.2
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 3.6e-49 198.4 126 81.7
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 4.7e-49 198.0 133 82.0
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 6.1e-49 197.6 135 80.7
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 6.1e-49 197.6 134 79.9
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 7.9e-49 197.2 129 80.6
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 7.9e-49 197.2 133 80.5
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 1.0e-48 196.8 122 82.8
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 1.0e-48 196.8 133 79.7
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 3.9e-48 194.9 129 79.1
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 6.7e-48 194.1 133 78.2
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 6.7e-48 194.1 133 78.2
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 6.7e-48 194.1 132 80.3
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 1.1e-47 193.4 133 78.9
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 2.0e-47 192.6 131 73.3
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 2.0e-47 192.6 134 79.9
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 2.6e-47 192.2 133 75.9
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 3.3e-47 191.8 131 72.5
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 3.3e-47 191.8 160 66.2
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 3.3e-47 191.8 127 78.7
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 5.7e-47 191.0 129 77.5
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 5.7e-47 191.0 132 77.3
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 7.4e-47 190.7 134 79.9
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 1.3e-46 189.9 133 75.2
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 1.3e-46 189.9 134 76.9
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 4.8e-46 188.0 133 75.9
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 6.3e-46 187.6 131 76.3
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 9.1e-45 183.7 110 86.4
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 2.9e-43 178.7 133 71.4
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 5.0e-43 177.9 104 86.5
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 1.1e-42 176.8 128 75.0
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 2.5e-42 175.6 128 73.4
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 3.2e-42 175.3 133 71.4
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 1.0e-40 170.2 132 68.9
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 1.8e-40 169.5 133 68.4
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 2.3e-40 169.1 130 70.8
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 8.8e-40 167.2 132 68.9
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 8.8e-40 167.2 128 71.1
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 6.3e-38 161.0 133 65.4
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 8.2e-38 160.6 132 65.9
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 4.5e-36 154.8 133 67.7
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 1.3e-35 153.3 133 66.2
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 2.7e-33 145.6 88 83.0
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 8.0e-33 144.1 139 61.2
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 4.2e-26 121.7 129 52.7
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 3.4e-23 112.1 72 79.2
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 2.0e-20 102.8 103 55.3
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 2.5e-18 95.9 72 69.4
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 3.5e-12 75.5 48 77.1
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 1.2e-09 67.0 92 42.4
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 3.6e-09 65.5 117 37.6


User provided reference genes

Program Settings