Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G087300 Glycine max HOM05D007150 ORTHO05D008994 1.4e-64 249.6 142 100.0
Glyma.20G127300 Glycine max HOM05D007150 ORTHO05D008994 1.3e-25 120.2 72 86.1
Glyma.10G263200 Glycine max HOM05D007150 ORTHO05D008994 3.4e-21 105.5 72 79.2
TPR.G27772 Trifolium pratense HOM05D007150 ORTHO05D008994 5.0e-17 91.7 72 69.4
Medtr1g107500 Medicago truncatula HOM05D007150 ORTHO05D008994 8.6e-17 90.9 72 66.7
Psat6g219760 Pisum sativum HOM05D007150 ORTHO05D008994 2.5e-16 89.4 72 65.3
Lj5g0008538 Lotus japonicus HOM05D007150 ORTHO05D008994 4.2e-16 88.6 72 69.4
VMungo0720G0738 Vigna mungo HOM05D007150 ORTHO05D008994 1.2e-15 87.0 72 69.4
Ca_11085_v3 Cicer arietinum L. HOM05D007150 ORTHO05D008994 8.0e-15 84.3 72 61.1
CiPaw.05G010400 Carya illinoinensis HOM05D007150 ORTHO05D008994 1.0e-14 84.0 73 56.2
Thecc.02G106600 Theobroma cacao HOM05D007150 ORTHO05D008994 1.4e-14 83.6 73 60.3
CANSAT25G0571 Cannabis sativa HOM05D007150 ORTHO05D008994 1.8e-14 83.2 73 57.5
Phvul.007G038700 Phaseolus vulgaris HOM05D007150 ORTHO05D008994 1.8e-14 83.2 72 62.5
RcHm_v2.0_Chr6g0255611 Rosa chinensis HOM05D007150 ORTHO05D008994 3.0e-14 82.4 73 61.6
Haze_10159 Corylus avellana HOM05D007150 ORTHO05D008994 4.0e-14 82.0 113 43.4
Cfa004568 Carpinus fangiana HOM05D007150 ORTHO05D008994 6.8e-14 81.3 113 42.5
COL.COLO4_32606 Corchorus olitorius HOM05D007150 ORTHO05D008994 8.9e-14 80.9 73 60.3
GSVIVG01003169001 Vitis vinifera HOM05D007150 ORTHO05D008994 1.2e-13 80.5 73 58.9
Prupe.8G133500 Prunus persica HOM05D007150 ORTHO05D008994 1.5e-13 80.1 72 56.9
FvH4_2g05350 Fragaria vesca HOM05D007150 ORTHO05D008994 2.6e-13 79.3 72 56.9
FAN15G2804 Fragaria x ananassa HOM05D007150 ORTHO05D008994 2.6e-13 79.3 72 56.9
FAN24G2604 Fragaria x ananassa HOM05D007150 ORTHO05D008994 2.6e-13 79.3 72 56.9
Cc02_g19160 Coffea canephora HOM05D007150 ORTHO05D008994 3.4e-13 79.0 73 56.2
QL11p034059 Quercus lobata HOM05D007150 ORTHO05D008994 3.4e-13 79.0 73 56.2
Gohir.A01G007800 Gossypium hirsutum HOM05D007150 ORTHO05D008994 5.7e-13 78.2 71 59.2
HanXRQChr16g0513181 Helianthus annuus HOM05D007150 ORTHO05D008994 7.5e-13 77.8 73 52.1
AL3G47080 Arabidopsis lyrata HOM05D007150 ORTHO05D008994 9.8e-13 77.4 71 53.5
Gorai.002G009100 Gossypium raimondii HOM05D007150 ORTHO05D008994 9.8e-13 77.4 71 57.7
Rhsim11G0160700 Rhododendron simsii HOM05D007150 ORTHO05D008994 9.8e-13 77.4 73 57.5
AT2G15320 Arabidopsis thaliana HOM05D007150 ORTHO05D008994 1.3e-12 77.0 71 52.1
FAN20G1091 Fragaria x ananassa HOM05D007150 ORTHO05D008994 1.3e-12 77.0 72 55.6
Gohir.D01G007950 Gossypium hirsutum HOM05D007150 ORTHO05D008994 1.3e-12 77.0 71 56.3
Nitab4.5_0005392g0010 Nicotiana tabacum HOM05D007150 ORTHO05D008994 1.3e-12 77.0 73 54.8
CARHR105700 Cardamine hirsuta HOM05D007150 ORTHO05D008994 2.2e-12 76.3 71 54.9
Duzib132G0401 Durio zibethinus HOM05D007150 ORTHO05D008994 2.8e-12 75.9 71 59.2
Nitab4.5_0002815g0080 Nicotiana tabacum HOM05D007150 ORTHO05D008994 2.8e-12 75.9 73 56.2
Potri.009G097100 Populus trichocarpa HOM05D007150 ORTHO05D008994 2.8e-12 75.9 71 57.7
Aa31LG8G13190 Aethionema arabicum HOM05D007150 ORTHO05D008994 3.7e-12 75.5 72 52.8
MD05G1087700 Malus domestica HOM05D007150 ORTHO05D008994 3.7e-12 75.5 73 54.8
Thhalv10022724m.g Eutrema salsugineum HOM05D007150 ORTHO05D008994 4.9e-12 75.1 72 51.4
Potri.001G301400 Populus trichocarpa HOM05D007150 ORTHO05D008994 4.9e-12 75.1 71 57.7
BcaB07g31791 Brassica carinata HOM05D007150 ORTHO05D008994 6.3e-12 74.7 71 53.5
CSS0037176 Camellia sinensis var. sinensis HOM05D007150 ORTHO05D008994 6.3e-12 74.7 104 45.2
Duzib052G1025 Durio zibethinus HOM05D007150 ORTHO05D008994 6.3e-12 74.7 71 57.7
Sabra09G0074700 Salix brachista HOM05D007150 ORTHO05D008994 6.3e-12 74.7 71 56.3
Lsat_1_v5_gn_5_114620 Lactuca sativa HOM05D007150 ORTHO05D008994 8.3e-12 74.3 73 50.7
PGSC0003DMG400025867 Solanum tuberosum HOM05D007150 ORTHO05D008994 1.1e-11 73.9 73 53.4
Atru.chr5.2575 Acer truncatum HOM05D007150 ORTHO05D008994 1.4e-11 73.6 71 52.1
SpUn0368_0010 Schrenkiella parvula HOM05D007150 ORTHO05D008994 1.4e-11 73.6 72 48.6
Solyc01g107670.2 Solanum lycopersicum HOM05D007150 ORTHO05D008994 1.4e-11 73.6 73 53.4
Sopen01g049850 Solanum pennellii HOM05D007150 ORTHO05D008994 1.4e-11 73.6 73 53.4
BcaC04g23049 Brassica carinata HOM05D007150 ORTHO05D008994 1.8e-11 73.2 71 52.1
C09p12710 Brassica napus HOM05D007150 ORTHO05D008994 1.8e-11 73.2 71 52.1
BolC9t54160H Brassica oleracea HOM05D007150 ORTHO05D008994 1.8e-11 73.2 71 52.1
Carub.0003s2921 Capsella rubella HOM05D007150 ORTHO05D008994 1.8e-11 73.2 71 49.3
Migut.B00379 Erythranthe guttata HOM05D007150 ORTHO05D008994 1.8e-11 73.2 71 54.9
Gohir.D13G041800 Gossypium hirsutum HOM05D007150 ORTHO05D008994 1.8e-11 73.2 71 54.9
Lj9P321T37 Lonicera japonica HOM05D007150 ORTHO05D008994 1.8e-11 73.2 71 53.5
A09p10710 Brassica napus HOM05D007150 ORTHO05D008994 2.4e-11 72.8 71 52.1
BraA09t36716Z Brassica rapa HOM05D007150 ORTHO05D008994 2.4e-11 72.8 71 52.1
Gohir.A13G043300 Gossypium hirsutum HOM05D007150 ORTHO05D008994 2.4e-11 72.8 71 54.9
Hma1.2p1_0796F.1_g219100 Hydrangea macrophylla HOM05D007150 ORTHO05D008994 2.4e-11 72.8 71 54.9
Lalb_Chr21g0308401 Lupinus albus HOM05D007150 ORTHO05D008994 2.4e-11 72.8 73 53.4
PGR042G2178 Punica granatum HOM05D007150 ORTHO05D008994 2.4e-11 72.8 73 56.2
TPR.G19060 Trifolium pratense HOM05D007150 ORTHO05D008994 2.4e-11 72.8 43 79.1
Aqoxy5G01157 Aquilegia oxysepala HOM05D007150 ORTHO05D008994 3.1e-11 72.4 73 52.1
Sabra16G0189500 Salix brachista HOM05D007150 ORTHO05D008994 3.1e-11 72.4 71 53.5
MSTRG.16718 Avicennia marina HOM05D007150 ORTHO05D008994 4.1e-11 72.0 73 50.7
Gorai.013G046700 Gossypium raimondii HOM05D007150 ORTHO05D008994 4.1e-11 72.0 71 54.9
CAN.G1231.13 Capsicum annuum HOM05D007150 ORTHO05D008994 9.2e-11 70.9 71 54.9
HanXRQChr10g0301561 Helianthus annuus HOM05D007150 ORTHO05D008994 9.2e-11 70.9 73 49.3
Nn1g04720 Nelumbo nucifera HOM05D007150 ORTHO05D008994 9.2e-11 70.9 73 50.7
Lj5P213T31 Lonicera japonica HOM05D007150 ORTHO05D008994 1.2e-10 70.5 71 50.7
Manes.07G069300 Manihot esculenta HOM05D007150 ORTHO05D008994 1.2e-10 70.5 71 52.1
Hma1.2p1_0474F.1_g160660 Hydrangea macrophylla HOM05D007150 ORTHO05D008994 1.6e-10 70.1 73 52.1
Cpa.g.sc106.82 Carica papaya HOM05D007150 ORTHO05D008994 2.0e-10 69.7 72 56.9
Oeu013742.1 Olea europaea HOM05D007150 ORTHO05D008994 2.0e-10 69.7 71 50.7
MELO3C018480.2 Cucumis melo HOM05D007150 ORTHO05D008994 2.7e-10 69.3 73 49.3
Dinv15755 Davidia involucrata HOM05D007150 ORTHO05D008994 2.7e-10 69.3 70 50.0
ClCG02G006250 Citrullus lanatus HOM05D007150 ORTHO05D008994 3.5e-10 68.9 73 49.3
TAR628G0324 Trochodendron aralioides HOM05D007150 ORTHO05D008994 3.5e-10 68.9 73 46.6
HanXRQChr03g0070241 Helianthus annuus HOM05D007150 ORTHO05D008994 7.8e-10 67.8 44 68.2
Peaxi162Scf00016g02223 Petunia axillaris HOM05D007150 ORTHO05D008994 7.8e-10 67.8 71 52.1
DCAR_021995 Daucus carota HOM05D007150 ORTHO05D008994 1.0e-09 67.4 71 52.1
THA.LOC104807835 Tarenaya hassleriana HOM05D007150 ORTHO05D008994 1.0e-09 67.4 72 47.2
Eucgr.H03228 Eucalyptus grandis HOM05D007150 ORTHO05D008994 2.3e-09 66.2 73 49.3
MBI16_g31755_MAGBIO Magnolia biondii HOM05D007150 ORTHO05D008994 2.9e-09 65.9 73 45.2
CDE02G3472 Ceratophyllum demersum HOM05D007150 ORTHO05D008994 1.1e-08 63.9 73 45.2
SGA_v2.0_scaffold32G13043 Striga asiatica HOM05D007150 ORTHO05D008994 1.5e-08 63.5 71 49.3
HanXRQChr10g0301541 Helianthus annuus HOM05D007150 ORTHO05D008994 2.8e-07 59.3 43 60.5
Sed0024536 Sechium edule HOM05D007150 ORTHO05D008994 1.8e-06 56.6 73 41.1
SalBow6G1098 Salvia bowleyana HOM05D007150 ORTHO05D008994 3.0e-06 55.8 45 60.0
HanXRQChr10g0301551 Helianthus annuus HOM05D007150 ORTHO05D008994 4.0e-06 55.5 84 38.1
Lsat_1_v5_gn_9_111460 Lactuca sativa HOM05D007150 ORTHO05D008994 8.9e-06 54.3 55 50.9


User provided reference genes

Program Settings