Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G086000 Glycine max HOM05D007471 ORTHO05D009481 2.9e-134 481.9 242 100.0
Glyma.15G195100 Glycine max HOM05D007471 ORTHO05D009481 3.0e-123 445.3 242 92.1
Phvul.009G214800 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 5.2e-107 391.3 242 82.6
VMungo1309G3041 Vigna mungo HOM05D007471 ORTHO05D009481 4.1e-104 381.7 242 80.6
Lj6g0025127 Lotus japonicus HOM05D007471 ORTHO05D009481 6.6e-102 374.4 243 76.5
Psat1g019920 Pisum sativum HOM05D007471 ORTHO05D009481 8.1e-100 367.5 243 74.9
Lalb_Chr10g0094201 Lupinus albus HOM05D007471 ORTHO05D009481 4.6e-95 351.7 242 71.1
Medtr2g049140 Medicago truncatula HOM05D007471 ORTHO05D009481 1.7e-94 349.7 242 73.6
Phvul.009G215100 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 4.9e-89 331.6 242 73.1
Ca_02565_v3 Cicer arietinum L. HOM05D007471 ORTHO05D009481 2.9e-81 305.8 220 70.9
TPR.G20279 Trifolium pratense HOM05D007471 ORTHO05D009481 1.3e-68 263.8 214 65.4
QL04p066931 Quercus lobata HOM05D007471 ORTHO05D009481 2.8e-68 262.7 242 53.3
MD17G1121200 Malus domestica HOM05D007471 ORTHO05D009481 3.7e-68 262.3 242 53.7
Dinv05327 Davidia involucrata HOM05D007471 ORTHO05D009481 6.2e-68 261.5 244 50.4
Cpa.g.sc136.59 Carica papaya HOM05D007471 ORTHO05D009481 3.1e-67 259.2 243 50.6
MD17G1122600 Malus domestica HOM05D007471 ORTHO05D009481 6.9e-67 258.1 242 52.5
TAR626G0037 Trochodendron aralioides HOM05D007471 ORTHO05D009481 1.9e-64 250.0 243 48.6
RcHm_v2.0_Chr2g0155251 Rosa chinensis HOM05D007471 ORTHO05D009481 4.2e-64 248.8 242 50.8
CSS0003771 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 9.3e-64 247.7 245 50.2
Ciclev10016450m.g Citrus clementina HOM05D007471 ORTHO05D009481 9.3e-64 247.7 244 50.4
Actinidia12353 Actinidia chinensis HOM05D007471 ORTHO05D009481 1.2e-63 247.3 243 48.1
Eucgr.K01386 Eucalyptus grandis HOM05D007471 ORTHO05D009481 3.5e-63 245.7 244 50.4
Manes.12G067200 Manihot esculenta HOM05D007471 ORTHO05D009481 4.6e-63 245.4 243 48.1
TPR.G28406 Trifolium pratense HOM05D007471 ORTHO05D009481 1.3e-62 243.8 202 63.4
FvH4_6g40230 Fragaria vesca HOM05D007471 ORTHO05D009481 2.3e-62 243.0 242 49.6
Sed0023252 Sechium edule HOM05D007471 ORTHO05D009481 3.0e-62 242.7 244 47.5
FAN05G3962 Fragaria x ananassa HOM05D007471 ORTHO05D009481 5.1e-62 241.9 242 49.2
FAN14G4986 Fragaria x ananassa HOM05D007471 ORTHO05D009481 8.7e-62 241.1 242 49.6
Lj8A138T38 Lonicera japonica HOM05D007471 ORTHO05D009481 9.6e-61 237.7 245 49.4
TWI36G0936 Tripterygium wilfordii HOM05D007471 ORTHO05D009481 2.8e-60 236.1 243 49.4
Haze_12583 Corylus avellana HOM05D007471 ORTHO05D009481 6.2e-60 235.0 241 52.7
Hma1.2p1_0599F.1_g186930 Hydrangea macrophylla HOM05D007471 ORTHO05D009481 6.2e-60 235.0 244 47.5
Rhsim06G0179200 Rhododendron simsii HOM05D000358 ORTHO05D001562 6.2e-60 235.0 243 48.1
FAN09G1454 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.8e-59 233.4 242 47.5
PGR044G0015 Punica granatum HOM05D007471 ORTHO05D009481 2.6e-58 229.6 242 45.9
MELO3C024177.2 Cucumis melo HOM05D007471 ORTHO05D009481 3.4e-58 229.2 247 44.1
CsaV3_7G002330 Cucumis sativus L. HOM05D007471 ORTHO05D009481 1.3e-57 227.3 247 43.7
Cc05_g01930 Coffea canephora HOM05D007471 ORTHO05D009481 2.9e-57 226.1 247 47.8
Nitab4.5_0003086g0070 Nicotiana tabacum HOM05D007471 ORTHO05D009481 3.8e-57 225.7 244 44.7
GSVIVG01030129001 Vitis vinifera HOM05D007471 ORTHO05D009481 1.2e-55 220.7 242 47.9
CARHR082340 Cardamine hirsuta HOM05D007471 ORTHO05D009481 2.7e-55 219.5 243 43.2
MSTRG.6626 Avicennia marina HOM05D007471 ORTHO05D009481 1.0e-54 217.6 243 46.9
AT3G07640 Arabidopsis thaliana HOM05D007471 ORTHO05D009481 1.8e-54 216.9 243 42.4
BcaB03g14688 Brassica carinata HOM05D007471 ORTHO05D009481 3.0e-54 216.1 243 41.6
Sp3g06580 Schrenkiella parvula HOM05D007471 ORTHO05D009481 3.0e-54 216.1 243 42.4
AL3G19000 Arabidopsis lyrata HOM05D007471 ORTHO05D009481 3.9e-54 215.7 243 42.4
Peaxi162Scf00359g00320 Petunia axillaris HOM05D007471 ORTHO05D009481 6.7e-54 214.9 244 41.8
Sc21g0000400 Simmondsia chinensis HOM05D007471 ORTHO05D009481 8.7e-54 214.5 245 43.7
Solyc07g045150.3 Solanum lycopersicum HOM05D007471 ORTHO05D009481 3.3e-53 212.6 243 42.4
Migut.M00062 Erythranthe guttata HOM05D007471 ORTHO05D009481 5.7e-53 211.8 243 44.0
PSO210G0038 Papaver somniferum HOM05D007471 ORTHO05D009481 5.7e-53 211.8 243 42.8
BcaC01g04271 Brassica carinata HOM05D007471 ORTHO05D009481 7.4e-53 211.5 243 42.8
C03p43000 Brassica napus HOM05D007471 ORTHO05D009481 7.4e-53 211.5 243 42.8
Sopen07g023700 Solanum pennellii HOM05D007471 ORTHO05D009481 7.4e-53 211.5 243 42.4
PGSC0003DMG402017414 Solanum tuberosum HOM05D007471 ORTHO05D009481 2.8e-52 209.5 244 42.2
Carub.0003s0722 Capsella rubella HOM05D007471 ORTHO05D009481 4.8e-52 208.8 245 41.2
HanXRQChr09g0257421 Helianthus annuus HOM05D007471 ORTHO05D009481 4.8e-52 208.8 244 45.1
Nn1g07565 Nelumbo nucifera HOM05D007471 ORTHO05D009481 1.8e-51 206.8 243 41.6
BolC3t16568H Brassica oleracea HOM05D007471 ORTHO05D009481 2.4e-51 206.5 243 42.0
Thhalv10021420m.g Eutrema salsugineum HOM05D007471 ORTHO05D009481 2.4e-51 206.5 243 40.7
SalBow7G1274 Salvia bowleyana HOM05D007471 ORTHO05D009481 3.1e-51 206.1 244 45.1
A03p35390 Brassica napus HOM05D007471 ORTHO05D009481 9.0e-51 204.5 243 41.2
BraA03t12717Z Brassica rapa HOM05D007471 ORTHO05D009481 9.0e-51 204.5 243 41.2
PSO210G4841 Papaver somniferum HOM05D007471 ORTHO05D009481 9.0e-51 204.5 245 41.6
THA.LOC104819026 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 1.5e-50 203.8 245 42.0
ATR0751G158 Amborella trichopoda HOM05D007471 ORTHO05D009481 5.9e-50 201.8 243 43.6
Lsat_1_v5_gn_9_102921 Lactuca sativa HOM05D007471 ORTHO05D009481 1.0e-49 201.1 243 42.0
ClCG02G003070 Citrullus lanatus HOM05D007471 ORTHO05D009481 2.2e-49 199.9 292 36.3
Atru.BG.43.p Acer truncatum HOM05D007471 ORTHO05D009481 2.9e-49 199.5 189 54.0
CAN.G826.3 Capsicum annuum HOM05D007471 ORTHO05D009481 5.0e-49 198.7 244 41.4
vmacro12060 Vaccinium macrocarpon HOM05D007471 ORTHO05D009481 5.0e-49 198.7 202 51.0
Aa31LG5G18220 Aethionema arabicum HOM05D007471 ORTHO05D009481 2.5e-48 196.4 266 39.5
MBI14_g27042_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 9.4e-48 194.5 232 43.1
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 2.1e-47 193.4 237 45.6
ECA240G3131 Erigeron canadensis HOM05D001349 ORTHO05D001980 2.5e-45 186.4 243 41.2
Oeu000672.1 Olea europaea HOM05D007471 ORTHO05D009481 3.7e-44 182.6 198 45.5
AUR62037766 Chenopodium quinoa HOM05D007471 ORTHO05D009481 1.1e-43 181.0 242 37.6
Prupe.3G192700 Prunus persica HOM05D007471 ORTHO05D009481 2.0e-42 176.8 173 47.4
AUR62018237 Chenopodium quinoa HOM05D007471 ORTHO05D009481 4.5e-42 175.6 242 37.6
Thecc.01G199800 Theobroma cacao HOM05D007471 ORTHO05D009481 4.5e-42 175.6 248 41.5
Duzib133G1025 Durio zibethinus HOM05D007471 ORTHO05D009481 5.5e-40 168.7 249 40.6
DCAR_019662 Daucus carota HOM05D007471 ORTHO05D009481 7.2e-40 168.3 197 42.6
CSS0004770 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 9.4e-40 167.9 170 48.8
FAN02G2672 Fragaria x ananassa HOM05D007471 ORTHO05D009481 9.4e-40 167.9 242 39.3
Zm00001eb245410 Zea mays HOM05D007471 ORTHO05D009481 4.4e-37 159.1 243 36.6
Gohir.D07G199700 Gossypium hirsutum HOM05D007471 ORTHO05D009481 1.7e-36 157.1 251 38.6
THA.LOC104822442 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 2.2e-36 156.8 246 36.2
BcaB03g14686 Brassica carinata HOM05D007471 ORTHO05D009481 2.8e-36 156.4 189 39.7
Gorai.001G223900 Gossypium raimondii HOM05D007471 ORTHO05D009481 4.8e-36 155.6 251 38.6
Gohir.A07G193500 Gossypium hirsutum HOM05D007471 ORTHO05D009481 1.8e-35 153.7 251 38.2
CDE11G0370 Ceratophyllum demersum HOM05D007471 ORTHO05D009481 2.0e-34 150.2 252 35.3
Os02g0582400 Oryza sativa ssp. japonica HOM05D007471 ORTHO05D009481 2.6e-34 149.8 241 34.4
COL.COLO4_19658 Corchorus olitorius HOM05D007471 ORTHO05D009481 3.0e-30 136.3 175 42.9
SGA_v2.0_scaffold73G24486 Striga asiatica HOM05D007471 ORTHO05D009481 1.8e-27 127.1 241 34.0
SHI10184 Sapria himalayana HOM05D007471 ORTHO05D009481 1.6e-26 124.0 165 38.8
MBI14_g39587_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 6.5e-25 118.6 238 32.8
SEGI_00651 Sequoiadendron giganteum HOM05D007471 ORTHO05D009481 3.6e-23 112.8 245 28.2
Peaxi162Scf00289g00310 Petunia axillaris HOM05D007471 ORTHO05D009481 3.6e-15 86.3 92 45.7
ClCG02G003080 Citrullus lanatus HOM05D007471 ORTHO05D009481 5.2e-14 82.4 77 51.9
FAN05G5088 Fragaria x ananassa HOM05D000100 ORTHO05D000052 3.1e-11 73.2 69 53.6
Ah.10g032600 Amaranthus hybridus HOM05D007471 ORTHO05D009481 1.0e-06 58.2 66 40.9


User provided reference genes

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