Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G085700 Glycine max HOM05D009013 ORTHO05D009761 1.3e-172 609.8 338 100.0
Phvul.009G214600 Phaseolus vulgaris HOM05D009013 ORTHO05D009761 1.5e-120 436.8 340 75.9
Glyma.15G195700 Glycine max HOM05D009013 ORTHO05D009761 2.6e-120 436.0 344 76.7
VMungo1309G2255 Vigna mungo HOM05D009013 ORTHO05D009761 4.7e-114 415.2 339 74.0
Lj6g0000102 Lotus japonicus HOM05D009013 ORTHO05D009761 2.9e-71 273.1 365 53.2
Lalb_Chr07g0186121 Lupinus albus HOM05D009013 ORTHO05D009761 4.6e-61 239.2 346 50.0
Lalb_Chr12g0204801 Lupinus albus HOM05D009013 ORTHO05D009761 5.9e-56 222.2 348 46.3
Lj4g0005206 Lotus japonicus HOM05D009013 ORTHO05D009761 1.6e-53 214.2 350 48.6
Glyma.08G121600 Glycine max HOM05D009013 ORTHO05D009761 3.9e-52 209.5 346 47.7
Lalb_Chr08g0233301 Lupinus albus HOM05D009013 ORTHO05D009761 1.1e-49 201.4 339 44.5
Lalb_Chr23g0275971 Lupinus albus HOM05D009013 ORTHO05D009761 1.5e-48 197.6 348 44.0
Glyma.05G164200 Glycine max HOM05D009013 ORTHO05D009761 2.6e-48 196.8 343 44.6
Lalb_Chr13g0295461 Lupinus albus HOM05D009013 ORTHO05D009761 5.9e-48 195.7 344 43.9
TPR.G22001 Trifolium pratense HOM05D009013 ORTHO05D009761 1.4e-44 184.5 343 46.6
arahy.Tifrunner.gnm1.ann1.5V604V Arachis hypogaea HOM05D009013 ORTHO05D009761 4.4e-43 179.5 343 43.4
Medtr2g049330 Medicago truncatula HOM05D009013 ORTHO05D009761 8.2e-42 175.3 308 45.1
Psat1g020440 Pisum sativum HOM05D009013 ORTHO05D009761 1.4e-41 174.5 488 36.7
arahy.Tifrunner.gnm1.ann1.3YWF5K Arachis hypogaea HOM05D009013 ORTHO05D009761 1.2e-40 171.4 343 42.3
Phvul.002G244200 Phaseolus vulgaris HOM05D009013 ORTHO05D009761 7.7e-40 168.7 343 42.3
VMungo0251G0903 Vigna mungo HOM05D009013 ORTHO05D009761 1.3e-39 167.9 342 41.8
TPR.G31355 Trifolium pratense HOM05D009013 ORTHO05D009761 5.9e-32 142.5 346 40.8
CiPaw.10G096600 Carya illinoinensis HOM05D009013 ORTHO05D009761 2.9e-31 140.2 371 38.3
Psat1g018200 Pisum sativum HOM05D009013 ORTHO05D009761 1.4e-28 131.3 345 35.9
Haze_05479 Corylus avellana HOM05D009013 ORTHO05D009761 5.7e-27 125.9 368 36.1
QL05p060720 Quercus lobata HOM05D009013 ORTHO05D009761 5.3e-25 119.4 382 36.1
Medtr6g068870 Medicago truncatula HOM05D009013 ORTHO05D009761 7.7e-24 115.5 336 35.1
Ca_25278_v3 Cicer arietinum L. HOM05D009013 ORTHO05D009761 1.0e-23 115.2 349 35.0
Dinv03635 Davidia involucrata HOM05D009013 ORTHO05D009761 1.1e-22 111.7 378 34.7
Cfa001036 Carpinus fangiana HOM05D009013 ORTHO05D009761 1.5e-22 111.3 367 34.9
Glyma.13G051300 Glycine max HOM05D009013 ORTHO05D009761 3.6e-21 106.7 53 94.3
Prupe.4G073200 Prunus persica HOM05D014736 ORTHO05D009761 4.7e-21 106.3 346 36.7
Potri.011G077700 Populus trichocarpa HOM05D009852 ORTHO05D009761 1.2e-16 91.7 376 31.4
Ciclev10017480m.g Citrus clementina HOM05D009852 ORTHO05D009761 3.5e-16 90.1 357 32.5
Thecc.06G158200 Theobroma cacao HOM05D009852 ORTHO05D009761 3.5e-16 90.1 351 34.5
DCAR_003953 Daucus carota HOM05D009013 ORTHO05D009761 8.6e-15 85.5 372 29.0
TWI73G0525 Tripterygium wilfordii HOM05D009852 ORTHO05D009761 9.5e-14 82.0 369 30.9
MD10G1268000 Malus domestica HOM05D014736 ORTHO05D009761 3.6e-13 80.1 261 32.2
Atru.chr10.1414 Acer truncatum HOM05D009852 ORTHO05D009761 1.4e-12 78.2 330 30.0
Gohir.D05G154000 Gossypium hirsutum HOM05D009852 ORTHO05D009761 1.4e-12 78.2 347 30.8
CiPaw.09G129900 Carya illinoinensis HOM05D009013 ORTHO05D009761 1.8e-12 77.8 534 25.7
Gorai.010G164100 Gossypium raimondii HOM05D009852 ORTHO05D009761 1.8e-12 77.8 348 34.2
Manes.15G116600 Manihot esculenta HOM05D009852 ORTHO05D009761 1.8e-12 77.8 398 30.7
Gorai.009G158300 Gossypium raimondii HOM05D009852 ORTHO05D009761 3.0e-12 77.0 347 30.8
Rhsim02G0193600 Rhododendron simsii HOM05D014645 ORTHO05D009761 8.9e-12 75.5 363 29.8
CANSAT35G0309 Cannabis sativa HOM05D009013 ORTHO05D009761 2.6e-11 73.9 342 34.2
TWI09G0214 Tripterygium wilfordii HOM05D009852 ORTHO05D009761 3.4e-11 73.6 377 28.6
TWI09G1113 Tripterygium wilfordii HOM05D009852 ORTHO05D009761 3.4e-11 73.6 377 28.6
arahy.Tifrunner.gnm1.ann1.KKL43J Arachis hypogaea HOM05D051477 ORTHO05D009761 4.4e-11 73.2 144 37.5
arahy.Tifrunner.gnm1.ann1.KTB3LS Arachis hypogaea HOM05D051477 ORTHO05D009761 4.4e-11 73.2 144 37.5
BcaC02g11497 Brassica carinata HOM05D008719 ORTHO05D010898 4.4e-11 73.2 95 45.3
Gohir.D06G140600 Gossypium hirsutum HOM05D009852 ORTHO05D009761 4.4e-11 73.2 345 34.2
Duzib192G0106 Durio zibethinus HOM05D009852 ORTHO05D009761 7.5e-11 72.4 347 34.0
Hma1.2p1_0015F.1_g010420 Hydrangea macrophylla HOM05D009013 ORTHO05D009761 7.5e-11 72.4 346 30.9
Oeu021526.1 Olea europaea HOM05D012266 ORTHO05D011876 2.8e-10 70.5 373 30.0
Duzib160G0535 Durio zibethinus HOM05D009852 ORTHO05D009761 4.9e-10 69.7 345 32.2
Oeu046855.1 Olea europaea HOM05D012266 ORTHO05D011876 2.4e-09 67.4 374 29.7
Manes.17G064400 Manihot esculenta HOM05D009852 ORTHO05D009761 3.1e-09 67.0 409 28.9
CsaV3_6G051330 Cucumis sativus L. HOM05D022667 ORTHO05D009761 4.1e-09 66.6 338 27.8
Gohir.A05G151600 Gossypium hirsutum HOM05D009852 ORTHO05D009761 4.1e-09 66.6 347 30.3
MELO3C007172.2 Cucumis melo HOM05D022667 ORTHO05D009761 7.0e-09 65.9 344 28.5
Duzib235G1088 Durio zibethinus HOM05D009852 ORTHO05D009761 7.0e-09 65.9 418 30.6
Carub.0004s1595 Capsella rubella HOM05D008719 ORTHO05D010898 1.2e-08 65.1 108 38.9
FAN11G2258 Fragaria x ananassa HOM05D014736 ORTHO05D009761 1.2e-08 65.1 191 32.5
FvH4_3g06440 Fragaria vesca HOM05D014736 ORTHO05D009761 1.6e-08 64.7 191 32.5
Sed0023686 Sechium edule HOM05D022667 ORTHO05D009761 1.6e-08 64.7 341 28.7
Gohir.D10G032500 Gossypium hirsutum HOM05D009852 ORTHO05D009761 2.0e-08 64.3 89 44.9
Gorai.011G034400 Gossypium raimondii HOM05D009852 ORTHO05D009761 2.0e-08 64.3 89 44.9
CSS0045433 Camellia sinensis var. sinensis HOM05D014645 ORTHO05D009761 2.7e-08 63.9 471 27.0
MD05G1292200 Malus domestica HOM05D014736 ORTHO05D009761 2.7e-08 63.9 253 29.6
CSS0047309 Camellia sinensis var. sinensis HOM05D014645 ORTHO05D009761 3.5e-08 63.5 255 28.6
ClCG01G024180 Citrullus lanatus HOM05D022667 ORTHO05D009761 3.5e-08 63.5 338 28.1
Gohir.A10G031700 Gossypium hirsutum HOM05D009852 ORTHO05D009761 3.5e-08 63.5 175 33.1
Actinidia07666 Actinidia chinensis HOM05D014645 ORTHO05D009761 5.9e-08 62.8 94 41.5
AL4G30240 Arabidopsis lyrata HOM05D008719 ORTHO05D010898 5.9e-08 62.8 105 38.1
Potri.001G354600 Populus trichocarpa HOM05D009852 ORTHO05D009761 7.8e-08 62.4 360 28.3
RcHm_v2.0_Chr5g0012861 Rosa chinensis HOM05D014736 ORTHO05D009761 1.0e-07 62.0 52 53.8
BcaB02g09560 Brassica carinata HOM05D008719 ORTHO05D010898 1.3e-07 61.6 224 30.4
C04p14710 Brassica napus HOM05D008719 ORTHO05D010898 1.3e-07 61.6 206 30.6
DCAR_007913 Daucus carota HOM05D009013 ORTHO05D009761 3.8e-07 60.1 302 26.8
Actinidia19483 Actinidia chinensis HOM05D014645 ORTHO05D009761 8.6e-07 58.9 143 34.3
Aa31LG6G6070 Aethionema arabicum HOM05D008719 ORTHO05D010898 2.5e-06 57.4 124 34.7
Ah.09g232960 Amaranthus hybridus HOM05D018558 ORTHO05D018254 3.3e-06 57.0 98 40.8
AT2G34310 Arabidopsis thaliana HOM05D008719 ORTHO05D010898 9.5e-06 55.5 341 28.7


User provided reference genes

Program Settings