Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 2638.2 1288 100.0
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2417.1 1289 90.5
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 2410.9 1289 90.6
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2321.6 1290 86.4
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2290.0 1290 84.9
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2284.6 1290 84.9
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2263.0 1290 84.3
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2250.3 1290 83.6
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2158.6 1415 75.4
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2141.7 1276 80.8
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2095.9 1290 78.0
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2080.4 1290 76.7
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2065.0 1292 75.6
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2065.0 1294 76.3
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2064.7 1292 77.0
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2064.3 1292 76.4
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2060.4 1292 77.0
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2053.9 1292 75.9
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2050.4 1290 75.7
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2050.0 1290 75.9
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2048.9 1292 75.9
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2047.7 1292 76.5
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2044.6 1292 74.9
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2044.2 1290 75.7
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2042.3 1292 75.0
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2040.0 1292 75.5
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2039.6 1292 75.2
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2030.0 1290 75.3
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2025.0 1292 74.4
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 2015.4 1042 94.8
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2010.7 1291 73.7
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2010.7 1292 74.8
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2010.7 1292 73.8
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2010.3 1293 74.6
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2007.3 1293 74.6
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2002.6 1292 74.1
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 1998.8 1292 74.5
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 1994.9 1292 73.5
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 1987.6 1292 73.4
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 1986.1 1292 73.5
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 1976.8 1290 73.3
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 1971.4 1311 72.2
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 1965.3 1292 72.8
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 1964.9 1290 71.8
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 1962.6 1299 73.0
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1956.8 1292 72.2
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 1944.5 1352 70.9
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 1936.4 1293 72.1
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 1919.4 1290 69.8
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 1919.1 1290 69.8
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 1916.0 1180 78.0
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 1910.2 1294 70.7
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 1904.4 1292 70.4
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1902.1 1292 70.3
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 1901.3 1338 67.6
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 1900.6 1277 69.9
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 1897.5 1296 69.5
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 1890.9 1292 69.4
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1886.7 1298 70.3
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 1880.1 1404 66.6
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1877.8 1291 69.9
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 1877.4 1291 70.2
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 1873.2 1291 69.8
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 1870.5 1290 69.5
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 1870.5 1291 68.4
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1870.1 1293 69.6
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 1869.4 1291 70.1
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 1864.4 1282 69.4
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 1864.0 1283 68.7
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 1861.7 1294 68.9
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1861.3 1292 69.2
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 1860.1 1293 69.4
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1856.3 1311 68.0
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 1852.4 1293 68.4
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 1852.0 1291 69.4
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 1850.1 1302 68.7
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1848.2 1295 69.0
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 1847.8 1291 69.2
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1847.4 1298 68.4
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1843.6 1160 77.2
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1840.9 1292 68.1
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 1814.3 1293 68.1
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1809.3 1316 66.9
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1790.4 1236 68.9
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1755.3 1233 68.0
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1731.1 1291 66.8
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1728.0 1305 62.8
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1678.3 1308 64.5
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 1674.1 1714 52.3
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1671.8 1291 61.9
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1542.3 1259 60.7
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1518.4 1373 57.4
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1501.5 1290 55.3
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1498.4 1290 55.6
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1489.6 1311 55.8
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1473.0 1293 54.5
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1469.9 1082 65.4
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1463.0 936 74.5
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1437.9 1311 54.5
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1402.9 1022 65.8
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1373.2 1291 57.0
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1236.9 690 85.5
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1147.9 956 59.4
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1108.2 910 61.6
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1103.6 712 73.7
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 4.3e-301 1038.5 745 66.7
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 4.3e-301 1038.5 600 83.3
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 1.6e-292 1010.0 742 66.3
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 8.5e-281 971.1 616 76.0
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.6e-258 897.1 682 61.3
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 2.3e-246 856.7 552 75.9
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 1.3e-228 797.7 509 73.7
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 1.1e-190 671.8 637 54.2
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 2.2e-180 637.5 688 44.3
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 1.3e-177 628.2 427 70.7
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.2e-173 615.1 486 62.3
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 1.2e-152 545.4 377 71.4
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 8.2e-151 539.3 329 80.2
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 4.0e-137 493.8 901 35.6
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.3e-111 409.1 696 37.1
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 7.3e-107 393.3 240 76.7
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 8.9e-105 386.3 428 45.1
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 8.9e-105 386.3 336 63.7
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 6.4e-103 380.2 246 71.5
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 8.4e-95 353.2 173 94.2
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.0e-84 319.7 213 68.1
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 1.5e-80 305.8 175 78.9
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 6.0e-77 293.9 202 72.3
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 7.6e-72 276.9 177 68.4
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 2.4e-57 228.8 152 71.7
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 8.8e-52 210.3 190 55.8
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 4.5e-48 198.0 212 45.3
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 2.7e-45 188.7 115 78.3
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 6.1e-45 187.6 130 63.1
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 2.6e-40 172.2 98 86.7
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 4.5e-40 171.4 119 63.0
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 2.2e-39 169.1 128 57.8
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 3.1e-33 148.7 170 48.8
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 4.2e-30 138.3 205 43.9
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 1.8e-28 132.9 92 71.7
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 2.6e-27 129.0 123 50.4
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 2.7e-24 119.0 83 69.9
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 2.7e-24 119.0 71 80.3
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 7.7e-24 117.5 88 65.9
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 1.3e-23 116.7 103 58.3
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 8.0e-21 107.5 57 86.0
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 5.2e-20 104.8 73 74.0
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 1.5e-19 103.2 207 35.7
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 1.8e-17 96.3 57 84.2
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.2e-16 93.6 139 38.1
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 1.0e-15 90.5 51 80.4
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 4.3e-14 85.1 71 57.7
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 3.6e-13 82.0 94 51.1
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.8e-12 79.7 48 81.2
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 3.4e-11 75.5 58 63.8
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 3.4e-11 75.5 52 71.2
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 4.4e-11 75.1 44 70.5
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.3e-10 73.6 94 41.5
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 2.0e-08 66.2 40 77.5
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 6.0e-08 64.7 42 64.3
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 7.8e-08 64.3 35 85.7
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 3.0e-07 62.4 164 29.9
Lsat_1_v5_gn_7_40200 Lactuca sativa HOM05D000062 ORTHO05D013119 1.5e-06 60.1 187 29.9
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 3.3e-06 58.9 42 78.6
HanXRQChr13g0412901 Helianthus annuus HOM05D000041 ORTHO05D000452 7.3e-06 57.8 205 25.4


User provided reference genes

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