Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G082200 Glycine max HOM05D006198 ORTHO05D008226 3.0e-137 491.9 259 100.0
Glyma.15G190700 Glycine max HOM05D006198 ORTHO05D008226 1.5e-123 446.4 261 91.6
Phvul.009G219000 Phaseolus vulgaris HOM05D006198 ORTHO05D008226 2.3e-113 412.5 264 84.8
VMungo1309G2860 Vigna mungo HOM05D006198 ORTHO05D008226 4.0e-113 411.8 287 79.1
arahy.Tifrunner.gnm1.ann1.ET305C Arachis hypogaea HOM05D006198 ORTHO05D008226 6.6e-100 367.9 260 78.8
arahy.Tifrunner.gnm1.ann1.8B838V Arachis hypogaea HOM05D006198 ORTHO05D008226 3.3e-99 365.5 260 78.5
Lj4g0025062 Lotus japonicus HOM05D006198 ORTHO05D003063 2.8e-98 362.5 262 76.0
Ca_18268_v3 Cicer arietinum L. HOM05D006198 ORTHO05D008226 1.7e-95 353.2 256 76.2
Lalb_Chr12g0208941 Lupinus albus HOM05D006198 ORTHO05D008226 1.1e-91 340.5 248 75.8
Psat7g090320 Pisum sativum HOM05D006198 ORTHO05D008226 5.3e-89 331.6 256 72.3
Medtr4g096750 Medicago truncatula HOM05D006198 ORTHO05D008226 2.0e-88 329.7 258 71.7
Thecc.06G152500 Theobroma cacao HOM05D006198 ORTHO05D008226 2.7e-85 319.3 249 71.1
Cpa.g.sc166.25 Carica papaya HOM05D006198 ORTHO05D008226 1.1e-83 313.9 250 70.4
TWI53G0219 Tripterygium wilfordii HOM05D006198 ORTHO05D008226 3.3e-83 312.4 246 69.9
COL.COLO4_38286 Corchorus olitorius HOM05D006198 ORTHO05D008226 4.3e-83 312.0 251 70.1
MELO3C007142.2 Cucumis melo HOM05D006198 ORTHO05D008226 4.3e-83 312.0 246 69.5
TWI09G1426 Tripterygium wilfordii HOM05D006198 ORTHO05D008226 5.6e-83 311.6 246 68.7
CsaV3_6G051650 Cucumis sativus L. HOM05D006198 ORTHO05D008226 9.6e-83 310.8 246 69.5
ClCG01G024530 Citrullus lanatus HOM05D006198 ORTHO05D008226 4.8e-82 308.5 254 68.1
Duzib160G0456 Durio zibethinus HOM05D006198 ORTHO05D008226 1.1e-81 307.4 249 69.5
CiPaw.09G125600 Carya illinoinensis HOM05D006198 ORTHO05D008226 1.8e-81 306.6 257 68.5
Ciclev10016356m.g Citrus clementina HOM05D006198 ORTHO05D008226 6.9e-81 304.7 246 69.1
Atru.chr10.1313 Acer truncatum HOM05D006198 ORTHO05D008226 2.6e-80 302.8 249 67.9
Prupe.4G078700 Prunus persica HOM05D006198 ORTHO05D008226 5.8e-80 301.6 248 68.1
Sed0015649 Sechium edule HOM05D006198 ORTHO05D008226 5.8e-80 301.6 245 66.9
Eucgr.E02394 Eucalyptus grandis HOM05D006198 ORTHO05D008226 9.9e-80 300.8 257 68.1
TAR629G0041 Trochodendron aralioides HOM05D006198 ORTHO05D008226 4.9e-79 298.5 247 65.6
Gorai.006G093100 Gossypium raimondii HOM05D006198 ORTHO05D008226 8.4e-79 297.7 246 66.7
Atru.chr10.1293 Acer truncatum HOM05D006198 ORTHO05D008226 1.1e-78 297.4 249 66.7
Gohir.A09G077700 Gossypium hirsutum HOM05D006198 ORTHO05D008226 3.2e-78 295.8 250 66.4
Dinv30723 Davidia involucrata HOM05D006198 ORTHO05D008226 4.2e-78 295.4 254 67.7
Potri.011G080300 Populus trichocarpa HOM05D006198 ORTHO05D008226 4.2e-78 295.4 252 65.5
RcHm_v2.0_Chr5g0013711 Rosa chinensis HOM05D006198 ORTHO05D008226 9.3e-78 294.3 245 65.3
TAR629G2249 Trochodendron aralioides HOM05D006198 ORTHO05D008226 9.3e-78 294.3 249 64.3
FAN16G3463 Fragaria x ananassa HOM05D006198 ORTHO05D008226 2.1e-77 293.1 251 65.7
Manes.15G120300 Manihot esculenta HOM05D006198 ORTHO05D008226 2.1e-77 293.1 250 67.2
Gohir.D09G077900 Gossypium hirsutum HOM05D006198 ORTHO05D008226 2.7e-77 292.7 250 66.0
MD10G1263800 Malus domestica HOM05D006198 ORTHO05D008226 4.6e-77 292.0 264 64.0
Atru.chr10.1297 Acer truncatum HOM05D006198 ORTHO05D008226 7.9e-77 291.2 249 66.3
FvH4_3g05790 Fragaria vesca HOM05D006198 ORTHO05D008226 1.0e-76 290.8 248 65.7
FAN11G0340 Fragaria x ananassa HOM05D006198 ORTHO05D008226 1.0e-76 290.8 248 65.7
MBI10_g21114_MAGBIO Magnolia biondii HOM05D006198 ORTHO05D008226 1.8e-76 290.0 256 62.5
Nn3g20699 Nelumbo nucifera HOM05D006198 ORTHO05D008226 5.1e-76 288.5 241 65.6
QL05p058855 Quercus lobata HOM05D006198 ORTHO05D008226 6.7e-76 288.1 251 64.9
PGR083G0877 Punica granatum HOM05D006198 ORTHO05D008226 2.5e-75 286.2 247 64.4
Actinidia39563 Actinidia chinensis HOM05D006198 ORTHO05D008226 2.8e-74 282.7 253 63.2
Nn6g32274 Nelumbo nucifera HOM05D006198 ORTHO05D008226 2.8e-74 282.7 241 64.3
HanXRQChr01g0020411 Helianthus annuus HOM05D006198 ORTHO05D008226 3.7e-74 282.3 249 64.3
PSO170G0869 Papaver somniferum HOM05D006198 ORTHO05D008226 4.8e-74 282.0 249 64.7
CANSAT35G1481 Cannabis sativa HOM05D006198 ORTHO05D008226 8.1e-74 281.2 256 62.1
Nitab4.5_0001655g0050 Nicotiana tabacum HOM05D006198 ORTHO05D008226 2.4e-73 279.6 255 64.7
Lj2A307G26 Lonicera japonica HOM05D006198 ORTHO05D008226 7.6e-72 274.6 253 63.6
Lsat_1_v5_gn_1_96760 Lactuca sativa HOM05D006198 ORTHO05D008226 1.7e-71 273.5 249 62.7
Nitab4.5_0005219g0070 Nicotiana tabacum HOM05D006198 ORTHO05D008226 1.7e-71 273.5 254 63.8
vmacro15943 Vaccinium macrocarpon HOM05D006198 ORTHO05D008226 1.7e-71 273.5 255 63.1
Aqoxy4G00108 Aquilegia oxysepala HOM05D006198 ORTHO05D008226 2.2e-71 273.1 248 60.9
ECA248G2800 Erigeron canadensis HOM05D006198 ORTHO05D008226 2.2e-71 273.1 250 62.8
Hma1.2p1_0259F.1_g104290 Hydrangea macrophylla HOM05D006198 ORTHO05D008226 2.2e-71 273.1 241 66.4
Sc24g0001850 Simmondsia chinensis HOM05D006198 ORTHO05D008226 2.9e-71 272.7 258 61.2
GSVIVG01021428001 Vitis vinifera HOM05D006198 ORTHO05D008226 3.8e-71 272.3 227 66.1
MSTRG.16229 Avicennia marina HOM05D006198 ORTHO05D008226 2.5e-70 269.6 255 61.2
ATR0585G073 Amborella trichopoda HOM05D006198 ORTHO05D008226 1.2e-69 267.3 254 60.6
AUR62030229 Chenopodium quinoa HOM05D006198 ORTHO05D008226 1.6e-69 266.9 290 55.5
SalBow8G2100 Salvia bowleyana HOM05D006198 ORTHO05D008226 2.7e-69 266.2 267 61.4
AUR62027530 Chenopodium quinoa HOM05D006198 ORTHO05D008226 4.6e-69 265.4 276 57.6
Actinidia07684 Actinidia chinensis HOM05D006198 ORTHO05D008226 6.0e-69 265.0 249 62.2
Peaxi162Scf00796g00114 Petunia axillaris HOM05D006198 ORTHO05D008226 1.0e-68 264.2 241 61.8
EL10Ac8g19743 Beta vulgaris HOM05D006198 ORTHO05D008226 1.8e-68 263.5 246 60.6
Cfa000959 Carpinus fangiana HOM05D006198 ORTHO05D008226 8.7e-68 261.2 228 67.1
Haze_05575 Corylus avellana HOM05D006198 ORTHO05D008226 8.7e-68 261.2 309 55.3
Os01g0666500 Oryza sativa ssp. japonica HOM05D006198 ORTHO05D008226 8.7e-68 261.2 266 56.8
SGA_v2.0_scaffold333G48994 Striga asiatica HOM05D006198 ORTHO05D008226 8.7e-68 261.2 256 60.5
CDE02G2137 Ceratophyllum demersum HOM05D006198 ORTHO05D008226 1.1e-67 260.8 243 60.1
CAN.G650.24 Capsicum annuum HOM05D006198 ORTHO05D008226 7.4e-67 258.1 252 61.1
Migut.M00923 Erythranthe guttata HOM05D006198 ORTHO05D008226 3.7e-66 255.8 260 60.0
Sopen02g019760 Solanum pennellii HOM05D006198 ORTHO05D008226 6.2e-66 255.0 252 61.5
Cc09_g09250 Coffea canephora HOM05D006198 ORTHO05D008226 4.0e-65 252.3 232 63.4
PGSC0003DMG401008288 Solanum tuberosum HOM05D006198 ORTHO05D008226 6.9e-65 251.5 254 59.4
HPP92_023266 Vanilla planifolia HOM05D006198 ORTHO05D008226 2.6e-64 249.6 247 57.5
HPP92_023299 Vanilla planifolia HOM05D006198 ORTHO05D008226 4.5e-64 248.8 247 57.1
DCAR_025303 Daucus carota HOM05D006198 ORTHO05D008226 4.9e-63 245.4 258 55.8
unitig_578.g16668 Utricularia gibba HOM05D006198 ORTHO05D008226 6.5e-63 245.0 253 57.3
Zm00001eb157440 Zea mays HOM05D006198 ORTHO05D008226 6.5e-63 245.0 256 55.5
Zm00001eb359760 Zea mays HOM05D006198 ORTHO05D008226 2.5e-62 243.0 248 56.9
Sabra11G0070000 Salix brachista HOM05D006198 ORTHO05D008226 7.9e-61 238.0 203 64.5
Sabra11G0067700 Salix brachista HOM05D006198 ORTHO05D008226 3.9e-60 235.7 203 64.5
Aa31LG6G950 Aethionema arabicum HOM05D006198 ORTHO05D008226 1.9e-59 233.4 247 55.1
C07p49570 Brassica napus HOM05D006198 ORTHO05D003063 2.5e-59 233.0 248 55.2
Thhalv10024846m.g Eutrema salsugineum HOM05D006198 ORTHO05D003063 3.3e-59 232.6 240 55.4
Sp7g15810 Schrenkiella parvula HOM05D006198 ORTHO05D008226 2.2e-58 229.9 270 50.7
BolC7t45461H Brassica oleracea HOM05D006198 ORTHO05D003063 2.8e-58 229.6 248 54.4
Carub.0007s2303 Capsella rubella HOM05D006198 ORTHO05D008226 2.8e-58 229.6 260 53.1
BraA03t14199Z Brassica rapa HOM05D006198 ORTHO05D003063 1.1e-57 227.6 248 54.0
THA.LOC104827723 Tarenaya hassleriana HOM05D006198 ORTHO05D008226 1.1e-57 227.6 256 53.9
A03p51170 Brassica napus HOM05D006198 ORTHO05D003063 1.4e-57 227.3 248 54.0
PSO017G1039 Papaver somniferum HOM05D006198 ORTHO05D008226 3.1e-57 226.1 206 63.1
AL7G36130 Arabidopsis lyrata HOM05D006198 ORTHO05D003063 1.5e-56 223.8 250 53.2
SGA_v2.0_scaffold1G00157 Striga asiatica HOM05D006198 ORTHO05D008226 1.5e-56 223.8 255 53.7
Oeu030914.3 Olea europaea HOM05D006198 ORTHO05D008226 1.0e-55 221.1 295 50.5
SEGI_09220 Sequoiadendron giganteum HOM05D006198 ORTHO05D008226 1.7e-55 220.3 247 53.0
Rhsim02G0156800 Rhododendron simsii HOM05D006198 ORTHO05D008226 1.2e-48 197.6 241 51.5
BcaNung05671 Brassica carinata HOM05D006198 ORTHO05D008226 7.7e-48 194.9 223 51.6
BcaNung05123 Brassica carinata HOM05D006198 ORTHO05D008226 1.0e-47 194.5 224 51.3
Solyc02g070680.4 Solanum lycopersicum HOM05D006198 ORTHO05D008226 1.1e-46 191.0 203 58.1
AagrBONN_evm.TU.Sc2ySwM_228.4358 Anthoceros agrestis HOM05D006198 ORTHO05D008226 5.5e-46 188.7 237 49.4
Mapoly0061s0133 Marchantia polymorpha HOM05D006198 ORTHO05D008226 5.5e-46 188.7 250 51.6
Pp3c24_15440 Physcomitrium patens HOM05D006198 ORTHO05D008226 9.7e-43 177.9 264 46.2
Hund21523 Selenicereus undatus HOM05D006198 ORTHO05D008226 1.0e-39 167.9 157 61.8
SMO361G0608 Selaginella moellendorffii HOM05D006198 ORTHO05D008226 1.9e-38 163.7 248 46.4
CARHR225050 Cardamine hirsuta HOM05D006198 ORTHO05D008226 4.7e-37 159.1 155 57.4
CDE08G0452 Ceratophyllum demersum HOM05D001706 ORTHO05D008226 2.9e-31 139.8 140 55.0
Atru.chr10.1305 Acer truncatum HOM05D006198 ORTHO05D008226 3.1e-25 119.8 118 61.0
Zm00001eb243030 Zea mays HOM05D006198 ORTHO05D008226 5.3e-25 119.0 124 56.5
Zm00001eb373810 Zea mays HOM05D006198 ORTHO05D008226 5.3e-25 119.0 124 56.5
CBR_g31781 Chara braunii HOM05D000019 ORTHO05D000048 5.0e-23 112.5 254 38.6
Zm00001eb235600 Zea mays HOM05D006198 ORTHO05D008226 2.1e-21 107.1 116 53.4
Atru.chr10.1302 Acer truncatum HOM05D000067 ORTHO05D000280 1.3e-18 97.8 95 60.0
CBR_g39020 Chara braunii HOM05D006198 ORTHO05D001303 5.4e-17 92.4 202 39.1
SEGI_25377 Sequoiadendron giganteum HOM05D006198 ORTHO05D008226 5.4e-17 92.4 94 51.1
Gohir.D05G152000 Gossypium hirsutum HOM05D006198 ORTHO05D008226 1.2e-16 91.3 69 69.6
HanXRQChr14g0435081 Helianthus annuus HOM05D006198 ORTHO05D008226 1.2e-16 91.3 77 63.6
Gorai.009G156000 Gossypium raimondii HOM05D006198 ORTHO05D008226 1.7e-15 87.4 73 65.8
Cre12.g523832 Chlamydomonas reinhardtii HOM05D006198 ORTHO05D008226 3.2e-09 66.6 173 34.7
Cre12.g523800 Chlamydomonas reinhardtii HOM05D006198 ORTHO05D008226 2.0e-08 63.9 62 58.1
MD05G1286000 Malus domestica HOM05D006198 ORTHO05D008226 2.7e-08 63.5 50 68.0
Sabra11G0070100 Salix brachista HOM05D006198 ORTHO05D008226 1.3e-07 61.2 48 70.8
Sabra11G0067800 Salix brachista HOM05D006198 ORTHO05D008226 3.9e-07 59.7 47 70.2


User provided reference genes

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