Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G081420 Glycine max HOM05D005348 ORTHO05D006635 3.2e-167 591.7 291 100.0
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 2.1e-158 562.4 282 98.2
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 6.2e-155 550.8 282 96.1
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 1.2e-147 526.6 286 92.0
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 1.4e-146 523.1 287 90.9
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 1.2e-145 520.0 282 89.0
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 9.3e-143 510.4 285 88.1
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 3.0e-141 505.4 279 86.4
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 6.9e-138 494.2 283 84.8
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 1.7e-136 489.6 253 91.3
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 2.2e-136 489.2 281 84.3
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 8.4e-136 487.3 288 83.3
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 2.3e-133 479.2 229 100.0
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 6.2e-131 471.1 281 78.6
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 6.2e-131 471.1 273 79.5
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 1.1e-130 470.3 276 80.8
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 1.4e-130 469.9 276 80.4
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 3.4e-129 465.3 279 77.4
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 4.5e-129 464.9 276 80.1
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 2.2e-128 462.6 278 79.1
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 6.4e-128 461.1 261 83.1
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 6.4e-128 461.1 278 78.8
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 8.4e-128 460.7 274 79.6
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 1.1e-127 460.3 274 80.3
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 7.1e-127 457.6 272 78.3
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 6.0e-126 454.5 276 77.2
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 6.0e-126 454.5 275 78.2
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 1.3e-125 453.4 282 75.9
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 3.0e-125 452.2 268 79.9
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 7.4e-124 447.6 288 75.3
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 7.4e-124 447.6 261 80.5
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 1.3e-123 446.8 282 74.8
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 2.4e-122 442.6 276 76.1
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 3.4e-121 438.7 324 68.2
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 1.7e-120 436.4 282 73.8
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 1.7e-120 436.4 292 71.2
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 6.5e-120 434.5 283 73.5
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 1.1e-119 433.7 264 76.9
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 1.1e-119 433.7 262 76.7
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 1.9e-119 433.0 243 84.0
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 3.2e-119 432.2 282 73.8
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 7.1e-119 431.0 274 73.4
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 1.6e-118 429.9 272 73.9
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 6.0e-118 427.9 263 76.8
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 1.0e-117 427.2 340 63.8
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 1.8e-117 426.4 285 70.2
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 2.3e-117 426.0 289 71.3
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 2.3e-117 426.0 276 73.2
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 3.0e-117 425.6 286 72.7
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 3.0e-117 425.6 270 74.4
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 1.5e-116 423.3 286 70.3
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 1.9e-116 422.9 290 70.0
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 3.3e-116 422.2 301 66.8
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 3.3e-116 422.2 271 72.3
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 5.7e-116 421.4 271 72.3
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 2.8e-115 419.1 277 70.0
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 1.4e-114 416.8 282 70.2
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 2.4e-114 416.0 276 74.6
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 4.5e-113 411.8 290 67.6
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 1.7e-112 409.8 264 73.1
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 5.0e-112 408.3 277 73.3
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 3.2e-111 405.6 257 74.3
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 9.4e-111 404.1 306 64.1
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 8.2e-107 391.0 341 56.9
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 5.3e-106 388.3 285 66.7
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 2.6e-105 386.0 282 67.4
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 4.5e-105 385.2 254 70.5
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 7.7e-105 384.4 282 66.0
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 1.7e-104 383.3 264 71.2
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 1.7e-104 383.3 244 79.5
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 5.0e-104 381.7 282 65.6
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 5.0e-104 381.7 216 77.8
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 8.5e-104 380.9 270 68.1
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 8.5e-104 380.9 280 70.4
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 2.5e-103 379.4 276 71.4
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 2.3e-101 372.9 314 61.8
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 3.9e-101 372.1 282 67.4
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 5.1e-101 371.7 201 82.1
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 1.1e-100 370.5 273 67.0
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 8.2e-99 364.4 202 80.7
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 6.5e-96 354.8 314 60.2
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 1.4e-95 353.6 269 61.7
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 5.5e-95 351.7 267 66.3
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 7.2e-95 351.3 278 68.0
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 1.2e-94 350.5 202 75.2
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 1.8e-93 346.7 326 55.8
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 1.1e-92 344.0 262 61.8
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 6.3e-91 338.2 256 69.5
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 3.1e-90 335.9 283 60.1
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.6e-89 333.6 274 65.3
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 7.7e-89 331.3 288 58.0
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 3.3e-84 315.8 313 53.0
Hund02677 Selenicereus undatus HOM05D005348 ORTHO05D006635 2.5e-79 299.7 294 56.1
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 1.5e-76 290.4 258 58.1
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 8.3e-67 258.1 286 52.8
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.7e-64 250.4 263 54.0
Prupe.8G039500 Prunus persica HOM05D005348 ORTHO05D006635 1.1e-63 247.7 201 62.7
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 5.6e-63 245.4 132 78.0
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 4.4e-60 235.7 260 51.5
FAN08G1421 Fragaria x ananassa HOM05D005348 ORTHO05D006635 3.9e-48 196.1 130 77.7
MBI04_g31964_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 5.1e-48 195.7 190 57.9
Glyma.11G026250 Glycine max HOM05D005348 ORTHO05D006635 1.4e-45 187.6 103 94.2
Gohir.D11G021150 Gossypium hirsutum HOM05D005348 ORTHO05D006635 1.1e-42 177.9 132 65.9
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 2.3e-40 170.2 118 66.9
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 3.3e-39 166.4 91 83.5
FAN08G1570 Fragaria x ananassa HOM05D005348 ORTHO05D006635 9.6e-39 164.9 186 54.8
HanXRQChr02g0035411 Helianthus annuus HOM05D005348 ORTHO05D006635 4.4e-36 156.0 121 57.0
Lj8A237G27 Lonicera japonica HOM05D005348 ORTHO05D006635 1.8e-29 134.0 78 84.6
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 4.0e-29 132.9 73 80.8
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 4.0e-29 132.9 73 80.8
FAN13G0849 Fragaria x ananassa HOM05D005348 ORTHO05D006635 5.1e-24 115.9 94 69.1
CsaV3_6G021380 Cucumis sativus L. HOM05D005348 ORTHO05D006635 2.2e-19 100.5 132 43.2
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 1.9e-18 97.4 64 65.6


User provided reference genes

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