Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G081380 Glycine max HOM05D005348 ORTHO05D006635 5.6e-118 427.6 206 100.0
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 4.5e-83 311.6 201 74.1
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 1.1e-78 297.0 201 71.1
VMungo1215G1628 Vigna mungo HOM05D005348 ORTHO05D006635 8.2e-77 290.8 221 66.5
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 1.4e-76 290.0 208 70.7
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 2.2e-74 282.7 208 69.7
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 4.2e-73 278.5 173 76.9
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 6.9e-68 261.2 208 64.9
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 7.7e-59 231.1 200 57.5
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 4.2e-57 225.3 207 53.1
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 4.7e-56 221.9 210 54.3
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 1.4e-55 220.3 211 55.9
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 7.4e-54 214.5 209 52.2
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 8.2e-53 211.1 176 61.9
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 1.4e-52 210.3 204 51.0
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 9.1e-52 207.6 207 49.8
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.0e-51 206.5 204 50.0
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 2.0e-51 206.5 201 53.7
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 4.5e-51 205.3 205 54.6
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 5.0e-50 201.8 216 49.5
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 6.5e-50 201.4 204 49.5
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 6.5e-50 201.4 204 49.5
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 1.1e-49 200.7 179 54.7
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 7.2e-49 198.0 201 51.2
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 9.4e-49 197.6 167 58.7
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 1.5e-46 190.3 145 62.1
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 3.3e-46 189.1 167 56.9
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 3.3e-46 189.1 200 47.0
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 1.7e-45 186.8 200 47.5
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 3.7e-45 185.7 212 47.6
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 4.8e-45 185.3 207 47.3
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 1.1e-44 184.1 212 46.7
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 4.1e-44 182.2 216 46.8
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 5.3e-44 181.8 173 50.3
MSTRG.13824 Avicennia marina HOM05D005348 ORTHO05D006635 7.0e-44 181.4 207 46.4
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 7.0e-44 181.4 163 55.2
Peaxi162Scf00714g00422 Petunia axillaris HOM05D005348 ORTHO05D006635 2.0e-43 179.9 209 46.9
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 2.0e-43 179.9 200 45.5
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 2.7e-43 179.5 209 47.4
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 4.5e-43 178.7 210 47.1
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 7.7e-43 177.9 110 69.1
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 2.9e-42 176.0 196 48.5
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 1.5e-41 173.7 143 56.6
FAN04G3017 Fragaria x ananassa HOM05D005348 ORTHO05D006635 5.5e-41 171.8 177 48.6
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 7.2e-41 171.4 205 43.9
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 9.4e-41 171.0 94 75.5
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 2.7e-40 169.5 208 46.2
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 4.7e-40 168.7 211 45.5
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 4.7e-40 168.7 121 62.0
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 8.0e-40 167.9 94 75.5
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 3.0e-39 166.0 144 54.2
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 5.2e-39 165.2 94 69.1
Prupe.8G039400 Prunus persica HOM05D005348 ORTHO05D006635 8.8e-39 164.5 196 44.4
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 1.5e-38 163.7 168 48.8
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 1.5e-38 163.7 177 46.9
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 4.4e-38 162.2 122 57.4
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 1.7e-37 160.2 209 45.0
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 3.1e-36 156.0 191 47.1
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 9.1e-36 154.5 180 45.6
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 1.6e-35 153.7 116 60.3
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 1.6e-35 153.7 206 43.7
Hund02678 Selenicereus undatus HOM05D005348 ORTHO05D006635 1.6e-35 153.7 205 44.4
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 2.0e-35 153.3 109 60.6
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.7e-35 152.9 204 42.6
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 1.7e-34 150.2 114 59.6
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 1.7e-34 150.2 114 59.6
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 3.8e-34 149.1 98 67.3
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 3.8e-34 149.1 204 42.6
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 5.0e-34 148.7 169 48.5
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 6.5e-34 148.3 178 44.9
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 1.1e-33 147.5 98 66.3
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 4.7e-32 142.1 99 59.6
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 6.1e-32 141.7 147 51.0
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 1.4e-31 140.6 138 51.4
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 1.8e-31 140.2 198 41.4
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 1.8e-31 140.2 203 42.4
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 3.0e-31 139.4 222 40.1
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 5.2e-31 138.7 203 39.4
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 5.2e-31 138.7 202 39.6
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 5.7e-30 135.2 179 42.5
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 1.7e-29 133.7 210 38.6
FAN08G2219 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.7e-29 133.7 141 50.4
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 2.8e-29 132.9 206 40.3
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 3.7e-29 132.5 211 39.3
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 4.1e-28 129.0 208 37.5
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 3.5e-27 125.9 162 45.7
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 1.5e-25 120.6 170 36.5
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 1.9e-25 120.2 123 54.5
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 3.3e-25 119.4 71 64.8
PGSC0003DMG400003049 Solanum tuberosum HOM05D005348 ORTHO05D006635 5.6e-25 118.6 174 42.5
ATR0757G119 Amborella trichopoda HOM05D005348 ORTHO05D006635 1.4e-23 114.0 191 36.1
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 4.0e-23 112.5 210 37.1
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 2.7e-19 99.8 80 55.0
FvH4_5g01630 Fragaria vesca HOM05D005348 ORTHO05D006635 4.4e-14 82.4 64 59.4
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 1.7e-13 80.5 36 100.0
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 1.4e-12 77.4 36 94.4
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 2.0e-11 73.6 36 91.7
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 1.0e-10 71.2 95 37.9
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 4.3e-09 65.9 37 67.6


User provided reference genes

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