Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G080700 Glycine max HOM05D002165 ORTHO05D001531 7.6e-39 163.3 80 100.0
Glyma.15G185700 Glycine max HOM05D002165 ORTHO05D001531 1.9e-37 158.7 80 97.5
Lj6g0008561 Lotus japonicus HOM05D002165 ORTHO05D001531 3.7e-33 144.4 80 87.5
Ca_02322_v3 Cicer arietinum L. HOM05D002165 ORTHO05D001531 5.9e-31 137.1 80 86.2
Ca_30364_v3 Cicer arietinum L. HOM05D002165 ORTHO05D001531 5.9e-31 137.1 80 86.2
Medtr2g044970 Medicago truncatula HOM05D002165 ORTHO05D001531 3.2e-29 131.3 80 85.0
Phvul.009G221300 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 4.2e-29 131.0 79 83.5
Phvul.009G221200 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 3.6e-28 127.9 77 84.4
Lalb_Chr08g0232971 Lupinus albus HOM05D002165 ORTHO05D001531 1.0e-27 126.3 80 78.8
Psat1g016840 Pisum sativum HOM05D002165 ORTHO05D001531 3.0e-27 124.8 80 82.5
Psat1g017000 Pisum sativum HOM05D002165 ORTHO05D001531 7.4e-26 120.2 80 80.0
TPR.G29438 Trifolium pratense HOM05D002165 ORTHO05D001531 1.4e-24 115.9 73 82.2
Lalb_Chr11g0073701 Lupinus albus HOM05D002165 ORTHO05D001531 1.2e-23 112.8 80 75.0
Lalb_Chr11g0073711 Lupinus albus HOM05D002165 ORTHO05D001531 7.7e-23 110.2 73 78.1
Lalb_Chr11g0073741 Lupinus albus HOM05D002165 ORTHO05D001531 7.7e-23 110.2 80 75.0
Glyma.15G185600 Glycine max HOM05D002165 ORTHO05D001531 1.0e-22 109.8 63 77.8
Medtr2g044960 Medicago truncatula HOM05D002165 ORTHO05D001531 6.5e-22 107.1 80 70.0
Psat4g020920 Pisum sativum HOM05D002165 ORTHO05D001531 6.5e-22 107.1 80 71.2
Lalb_Chr11g0073691 Lupinus albus HOM05D002165 ORTHO05D001531 8.5e-22 106.7 80 72.5
Lalb_Chr11g0073721 Lupinus albus HOM05D002165 ORTHO05D001531 8.5e-22 106.7 73 76.7
TPR.G29235 Trifolium pratense HOM05D002165 ORTHO05D001531 2.5e-21 105.1 80 70.0
Glyma.09G080800 Glycine max HOM05D002165 ORTHO05D001531 3.2e-21 104.8 63 77.8
Lalb_Chr07g0181571 Lupinus albus HOM05D002165 ORTHO05D001531 5.5e-21 104.0 80 66.2
Glyma.15G185400 Glycine max HOM05D002165 ORTHO05D001531 2.1e-20 102.1 84 71.4
Glyma.17G042500 Glycine max HOM05D002165 ORTHO05D001531 4.7e-20 100.9 81 71.6
Phvul.009G221100 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 6.1e-20 100.5 80 66.2
Phvul.009G221400 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 1.4e-19 99.4 80 65.0
Phvul.003G124200 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 2.3e-19 98.6 81 67.9
Glyma.13G117400 Glycine max HOM05D002165 ORTHO05D001531 8.8e-19 96.7 83 67.5
Ca_21362_v3 Cicer arietinum L. HOM05D002165 ORTHO05D001531 6.3e-17 90.5 79 60.8
Lalb_Chr12g0200511 Lupinus albus HOM05D002165 ORTHO05D001531 2.4e-16 88.6 80 62.5
Lalb_Chr13g0299051 Lupinus albus HOM05D002165 ORTHO05D001531 1.6e-15 85.9 82 54.9
MD13G1137400 Malus domestica HOM05D002165 ORTHO05D001531 2.6e-15 85.1 76 60.5
Medtr4g124220 Medicago truncatula HOM05D002165 ORTHO05D001531 2.6e-15 85.1 83 60.2
QL06p014681 Quercus lobata HOM05D002165 ORTHO05D001531 2.6e-15 85.1 69 59.4
GSVIVG01017704001 Vitis vinifera HOM05D002165 ORTHO05D001531 5.0e-14 80.9 72 59.7
MD16G1133300 Malus domestica HOM05D002165 ORTHO05D001531 8.5e-14 80.1 76 57.9
GSVIVG01017705001 Vitis vinifera HOM05D002165 ORTHO05D001531 1.1e-13 79.7 72 58.3
GSVIVG01017706001 Vitis vinifera HOM05D002165 ORTHO05D001531 1.1e-13 79.7 72 58.3
Prupe.1G207900 Prunus persica HOM05D002165 ORTHO05D001531 3.2e-13 78.2 75 58.7
RcHm_v2.0_Chr4g0427981 Rosa chinensis HOM05D002165 ORTHO05D001531 3.2e-13 78.2 72 56.9
CiPaw.01G127300 Carya illinoinensis HOM05D002165 ORTHO05D001531 4.2e-13 77.8 76 52.6
MD13G1137300 Malus domestica HOM05D002165 ORTHO05D001531 5.5e-13 77.4 73 58.9
FvH4_4g21750 Fragaria vesca HOM05D002165 ORTHO05D001531 1.2e-12 76.3 72 55.6
FAN07G0342 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.2e-12 76.3 72 55.6
FAN12G3878 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.2e-12 76.3 72 55.6
FAN17G1996 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.2e-12 76.3 72 55.6
Phvul.009G221500 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 1.6e-12 75.9 69 63.8
GSVIVG01017707001 Vitis vinifera HOM05D002165 ORTHO05D001531 2.1e-12 75.5 72 56.9
CiPaw.02G068700 Carya illinoinensis HOM05D002165 ORTHO05D001531 1.4e-11 72.8 76 48.7
Aa31LG11G9930 Aethionema arabicum HOM05D002165 ORTHO05D001531 8.8e-11 70.1 76 50.0
PSO761G0534 Papaver somniferum HOM05D002165 ORTHO05D001531 8.8e-11 70.1 73 54.8
Potri.010G003900 Populus trichocarpa HOM05D002165 ORTHO05D001531 1.5e-10 69.3 75 54.7
MELO3C006762.2 Cucumis melo HOM05D002165 ORTHO05D001531 3.3e-10 68.2 88 52.3
BcaC04g23632 Brassica carinata HOM05D002165 ORTHO05D001531 5.7e-10 67.4 76 50.0
A09p05720 Brassica napus HOM05D002165 ORTHO05D001531 5.7e-10 67.4 76 50.0
C09p06310 Brassica napus HOM05D002165 ORTHO05D001531 5.7e-10 67.4 76 50.0
BolC9t53551H Brassica oleracea HOM05D002165 ORTHO05D001531 5.7e-10 67.4 76 50.0
BraA09t36213Z Brassica rapa HOM05D002165 ORTHO05D001531 5.7e-10 67.4 76 50.0
AUR62002532 Chenopodium quinoa HOM05D002165 ORTHO05D001531 5.7e-10 67.4 73 54.8
CsaV3_3G015630 Cucumis sativus L. HOM05D002165 ORTHO05D001531 5.7e-10 67.4 70 58.6
BcaB04g19717 Brassica carinata HOM05D002165 ORTHO05D001531 9.7e-10 66.6 76 51.3
Gohir.A09G242300 Gossypium hirsutum HOM05D002165 ORTHO05D001531 9.7e-10 66.6 73 54.8
AUR62023661 Chenopodium quinoa HOM05D002165 ORTHO05D001531 1.3e-09 66.2 70 55.7
EL10Ac3g06229 Beta vulgaris HOM05D002165 ORTHO05D001531 1.7e-09 65.9 69 50.7
Gohir.D09G243000 Gossypium hirsutum HOM05D002165 ORTHO05D001531 1.7e-09 65.9 73 54.8
Gorai.006G266800 Gossypium raimondii HOM05D002165 ORTHO05D001531 1.7e-09 65.9 73 54.8
CARHR186860 Cardamine hirsuta HOM05D002165 ORTHO05D001531 2.2e-09 65.5 78 50.0
Sabra10G0003300 Salix brachista HOM05D002165 ORTHO05D001531 2.2e-09 65.5 63 54.0
AL3G16610 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 3.7e-09 64.7 81 49.4
Thhalv10005460m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 3.7e-09 64.7 77 49.4
Nn4g25284 Nelumbo nucifera HOM05D002165 ORTHO05D001531 3.7e-09 64.7 41 73.2
AT3G05858 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 4.8e-09 64.3 83 48.2
Carub.0003s0521 Capsella rubella HOM05D002165 ORTHO05D001531 4.8e-09 64.3 75 50.7
Aa31LG5G16230 Aethionema arabicum HOM05D002165 ORTHO05D001531 6.3e-09 63.9 77 46.8
BcaB07g29941 Brassica carinata HOM05D002165 ORTHO05D001531 6.3e-09 63.9 76 48.7
BcaC01g04301 Brassica carinata HOM05D002165 ORTHO05D001531 6.3e-09 63.9 77 48.1
C03p41790 Brassica napus HOM05D002165 ORTHO05D001531 6.3e-09 63.9 77 48.1
BolC3t16462H Brassica oleracea HOM05D002165 ORTHO05D001531 6.3e-09 63.9 77 48.1
Manes.03G213400 Manihot esculenta HOM05D002165 ORTHO05D001531 6.3e-09 63.9 76 48.7
Sed0018176 Sechium edule HOM05D002165 ORTHO05D001531 6.3e-09 63.9 84 50.0
BcaNung03907 Brassica carinata HOM05D002165 ORTHO05D001531 8.2e-09 63.5 76 48.7
A06p36950 Brassica napus HOM05D002165 ORTHO05D001531 8.2e-09 63.5 76 48.7
BraA02t08873Z Brassica rapa HOM05D002165 ORTHO05D001531 8.2e-09 63.5 76 48.7
BraA06t26620Z Brassica rapa HOM05D002165 ORTHO05D001531 8.2e-09 63.5 76 48.7
BcaB04g19240 Brassica carinata HOM05D002165 ORTHO05D001531 1.1e-08 63.2 77 48.1
BcaC03g17834 Brassica carinata HOM05D002165 ORTHO05D001531 1.1e-08 63.2 76 48.7
BcaNung03681 Brassica carinata HOM05D002165 ORTHO05D001531 1.1e-08 63.2 76 48.7
BcaNung06223 Brassica carinata HOM05D002165 ORTHO05D001531 1.1e-08 63.2 76 48.7
A02p39040 Brassica napus HOM05D002165 ORTHO05D001531 1.1e-08 63.2 76 48.7
A03p34320 Brassica napus HOM05D002165 ORTHO05D001531 1.1e-08 63.2 77 48.1
C02p58650 Brassica napus HOM05D002165 ORTHO05D001531 1.1e-08 63.2 76 48.7
C07p41550 Brassica napus HOM05D002165 ORTHO05D001531 1.1e-08 63.2 76 48.7
BolC2t11925H Brassica oleracea HOM05D002165 ORTHO05D001531 1.1e-08 63.2 76 48.7
BolC7t44687H Brassica oleracea HOM05D002165 ORTHO05D001531 1.1e-08 63.2 76 48.7
BraA03t12608Z Brassica rapa HOM05D002165 ORTHO05D001531 1.1e-08 63.2 77 48.1
Cpa.g.sc146.6 Carica papaya HOM05D002165 ORTHO05D001531 1.1e-08 63.2 66 51.5
Atru.chr12.1534 Acer truncatum HOM05D002165 ORTHO05D001531 1.4e-08 62.8 67 49.3
Atru.chr12.1536 Acer truncatum HOM05D002165 ORTHO05D001531 1.4e-08 62.8 67 49.3
Carub.0006s2437 Capsella rubella HOM05D002165 ORTHO05D001531 1.4e-08 62.8 78 50.0
AL6G38560 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 1.8e-08 62.4 78 50.0
AT5G26620 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 1.8e-08 62.4 51 58.8
CARHR080310 Cardamine hirsuta HOM05D002165 ORTHO05D001531 1.8e-08 62.4 76 50.0
Thhalv10021847m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 2.4e-08 62.0 82 46.3
Cpa.g.sc48.225 Carica papaya HOM05D002165 ORTHO05D001531 3.1e-08 61.6 77 48.1
Sp3g04720 Schrenkiella parvula HOM05D002165 ORTHO05D001531 4.1e-08 61.2 82 47.6
Gohir.A02G059800 Gossypium hirsutum HOM05D002165 ORTHO05D001531 5.3e-08 60.8 76 50.0
Gohir.D02G065400 Gossypium hirsutum HOM05D002165 ORTHO05D001531 5.3e-08 60.8 76 50.0
Gorai.005G074100 Gossypium raimondii HOM05D002165 ORTHO05D001531 5.3e-08 60.8 76 50.0
Psat3g015160 Pisum sativum HOM05D008018 ORTHO05D001531 5.3e-08 60.8 76 52.6
Sc16g0009410 Simmondsia chinensis HOM05D002165 ORTHO05D001531 7.0e-08 60.5 39 66.7
Cfa015751 Carpinus fangiana HOM05D002165 ORTHO05D001531 9.1e-08 60.1 76 50.0
DCAR_023419 Daucus carota HOM05D002165 ORTHO05D001531 9.1e-08 60.1 70 50.0
Eucgr.H01330 Eucalyptus grandis HOM05D002165 ORTHO05D001531 9.1e-08 60.1 74 47.3
TAR633G1086 Trochodendron aralioides HOM05D002165 ORTHO05D001531 9.1e-08 60.1 75 46.7
BcaC09g47857 Brassica carinata HOM05D002165 ORTHO05D001531 1.2e-07 59.7 77 50.6
BolC1t05659H Brassica oleracea HOM05D002165 ORTHO05D001531 1.2e-07 59.7 77 50.6
BraA01t04469Z Brassica rapa HOM05D002165 ORTHO05D001531 1.2e-07 59.7 77 50.6
Eucgr.H01327 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.2e-07 59.7 74 47.3
Eucgr.H01329 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.2e-07 59.7 74 47.3
Eucgr.H01332 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.2e-07 59.7 74 44.6
THA.LOC104818754 Tarenaya hassleriana HOM05D002165 ORTHO05D001531 1.2e-07 59.7 74 51.4
Aqoxy5G02840 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 1.6e-07 59.3 78 46.2
BcaC05g30083 Brassica carinata HOM05D002165 ORTHO05D001531 1.6e-07 59.3 70 48.6
C05p61420 Brassica napus HOM05D002165 ORTHO05D001531 1.6e-07 59.3 70 48.6
BolC5t34800H Brassica oleracea HOM05D002165 ORTHO05D001531 1.6e-07 59.3 70 48.6
Ciclev10013801m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.6e-07 59.3 72 44.4
Eucgr.H01325 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.6e-07 59.3 74 47.3
Eucgr.H01326 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.6e-07 59.3 74 47.3
BcaC05g29776 Brassica carinata HOM05D002165 ORTHO05D001531 2.0e-07 58.9 70 48.6
A05p42200 Brassica napus HOM05D002165 ORTHO05D001531 2.0e-07 58.9 74 47.3
BraA05t22939Z Brassica rapa HOM05D002165 ORTHO05D001531 2.0e-07 58.9 74 47.3
DCAR_002558 Daucus carota HOM05D002165 ORTHO05D001531 2.0e-07 58.9 77 45.5
Eucgr.H01328 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.0e-07 58.9 74 45.9
Thecc.04G314700 Theobroma cacao HOM05D002165 ORTHO05D001531 2.0e-07 58.9 73 49.3
CsaV3_6G002670 Cucumis sativus L. HOM05D002165 ORTHO05D001531 2.7e-07 58.5 77 46.8
TAR362G0276 Trochodendron aralioides HOM05D002165 ORTHO05D001531 2.7e-07 58.5 75 45.3
DCAR_026927 Daucus carota HOM05D002165 ORTHO05D001531 4.5e-07 57.8 68 41.2
Aa31LG8G4440 Aethionema arabicum HOM05D002165 ORTHO05D001531 5.9e-07 57.4 76 42.1
BcaB06g25836 Brassica carinata HOM05D002165 ORTHO05D001531 5.9e-07 57.4 75 44.0
A01p30200 Brassica napus HOM05D002165 ORTHO05D001531 5.9e-07 57.4 82 46.3
Duzib128G1662 Durio zibethinus HOM05D002165 ORTHO05D001531 5.9e-07 57.4 81 48.1
Eucgr.H01331 Eucalyptus grandis HOM05D002165 ORTHO05D001531 5.9e-07 57.4 72 45.8
Psat6g157040 Pisum sativum HOM05D008018 ORTHO05D001531 5.9e-07 57.4 75 49.3
COL.COLO4_36933 Corchorus olitorius HOM05D002165 ORTHO05D001531 7.7e-07 57.0 73 47.9
Eucgr.H01321 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.0e-06 56.6 77 45.5
Thhalv10022047m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 1.0e-06 56.6 75 41.3
MBI19_g04832_MAGBIO Magnolia biondii HOM05D002165 ORTHO05D001531 1.0e-06 56.6 37 67.6
Psat6g154080 Pisum sativum HOM05D008018 ORTHO05D001531 1.0e-06 56.6 72 48.6
ClCG00G002170 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.3e-06 56.2 77 45.5
ClCG08G002310 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.3e-06 56.2 77 45.5
ClCG08G002360 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.3e-06 56.2 77 45.5
AUR62006822 Chenopodium quinoa HOM05D002165 ORTHO05D001531 1.7e-06 55.8 41 61.0
PGR083G0845 Punica granatum HOM05D002165 ORTHO05D001531 1.7e-06 55.8 49 57.1
Sed0011742 Sechium edule HOM05D002165 ORTHO05D001531 1.7e-06 55.8 56 44.6
AL3G30640 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 2.2e-06 55.5 78 39.7
EL10Ac4g09564 Beta vulgaris HOM05D002165 ORTHO05D001531 2.2e-06 55.5 34 70.6
Carub.0003s1728 Capsella rubella HOM05D002165 ORTHO05D001531 2.2e-06 55.5 74 41.9
AUR62000479 Chenopodium quinoa HOM05D002165 ORTHO05D001531 2.2e-06 55.5 50 54.0
Eucgr.H01333 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.2e-06 55.5 73 42.5
BcaC01g03752 Brassica carinata HOM05D002165 ORTHO05D001531 2.9e-06 55.1 77 41.6
BolC3t17173H Brassica oleracea HOM05D002165 ORTHO05D001531 2.9e-06 55.1 77 41.6
CARHR092880 Cardamine hirsuta HOM05D002165 ORTHO05D001531 2.9e-06 55.1 78 39.7
Ciclev10013220m.g Citrus clementina HOM05D002165 ORTHO05D001531 2.9e-06 55.1 73 42.5
A03p40240 Brassica napus HOM05D002165 ORTHO05D001531 3.8e-06 54.7 77 41.6
Eucgr.H01334 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.8e-06 54.7 73 42.5
FAN02G1676 Fragaria x ananassa HOM05D002165 ORTHO05D001531 3.8e-06 54.7 73 43.8
FAN05G4164 Fragaria x ananassa HOM05D002165 ORTHO05D001531 3.8e-06 54.7 73 43.8
FAN09G0584 Fragaria x ananassa HOM05D002165 ORTHO05D001531 3.8e-06 54.7 73 43.8
Aqoxy2G02476 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 5.0e-06 54.3 68 48.5
BcaC05g28774 Brassica carinata HOM05D002165 ORTHO05D001531 5.0e-06 54.3 75 41.3
C05p48810 Brassica napus HOM05D002165 ORTHO05D001531 5.0e-06 54.3 75 41.3
BolC5t33619H Brassica oleracea HOM05D002165 ORTHO05D001531 5.0e-06 54.3 75 41.3
Ca_10206_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 5.0e-06 54.3 78 44.9
MELO3C025017.2 Cucumis melo HOM05D002165 ORTHO05D001531 6.5e-06 53.9 77 44.2
arahy.Tifrunner.gnm1.ann1.RMBA11 Arachis hypogaea HOM05D008018 ORTHO05D001531 8.5e-06 53.5 72 50.0
C03p48940 Brassica napus HOM05D002165 ORTHO05D001531 8.5e-06 53.5 70 44.3
CsaV3_6G002630 Cucumis sativus L. HOM05D002165 ORTHO05D001531 8.5e-06 53.5 79 46.8
Sed0027158 Sechium edule HOM05D002165 ORTHO05D001531 8.5e-06 53.5 59 50.8


User provided reference genes

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