Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G077900 Glycine max HOM05D005549 ORTHO05D006771 1.8e-198 695.7 345 100.0
Glyma.15G218700 Glycine max HOM05D005549 ORTHO05D006771 8.6e-196 686.8 345 98.8
VMungo1127G1558 Vigna mungo HOM05D005549 ORTHO05D006771 8.6e-172 607.1 347 87.9
Phvul.011G182066 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 2.3e-164 582.4 347 85.6
Ca_06401_v3 Cicer arietinum L. HOM05D005549 ORTHO05D006771 4.3e-163 578.2 347 83.9
Medtr5g096040 Medicago truncatula HOM05D005549 ORTHO05D006771 4.3e-163 578.2 344 83.1
Phvul.011G182000 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 2.1e-162 575.9 347 85.0
LjContig00081g0017630 Lotus japonicus HOM05D005549 ORTHO05D006771 5.2e-161 571.2 347 82.1
Lalb_Chr04g0247841 Lupinus albus HOM05D005549 ORTHO05D006771 3.8e-159 565.1 347 83.0
TPR.G8611 Trifolium pratense HOM05D005549 ORTHO05D006771 9.3e-158 560.5 347 81.3
arahy.Tifrunner.gnm1.ann1.7VTX70 Arachis hypogaea HOM05D005549 ORTHO05D006771 3.0e-156 555.4 352 79.8
arahy.Tifrunner.gnm1.ann1.386HL4 Arachis hypogaea HOM05D005549 ORTHO05D006771 3.9e-156 555.1 352 79.8
Psat2g007040 Pisum sativum HOM05D005549 ORTHO05D006771 5.1e-156 554.7 347 81.0
arahy.Tifrunner.gnm1.ann1.BH3JLW Arachis hypogaea HOM05D005549 ORTHO05D006771 2.2e-151 539.3 341 80.4
Haze_07531 Corylus avellana HOM05D005549 ORTHO05D006771 1.3e-138 496.9 340 68.2
Dinv38568 Davidia involucrata HOM05D005549 ORTHO05D006771 1.3e-138 496.9 347 66.0
Actinidia19108 Actinidia chinensis HOM05D005549 ORTHO05D006771 2.6e-136 489.2 358 64.0
QL10p009538 Quercus lobata HOM05D005549 ORTHO05D006771 1.9e-134 483.0 346 65.6
Manes.06G106600 Manihot esculenta HOM05D005549 ORTHO05D006771 7.1e-134 481.1 344 66.0
Duzib205G0052 Durio zibethinus HOM05D005549 ORTHO05D006771 2.7e-133 479.2 347 65.1
Sabra14G0003300 Salix brachista HOM05D005549 ORTHO05D006771 2.7e-133 479.2 345 62.3
vmacro16625 Vaccinium macrocarpon HOM05D005549 ORTHO05D006771 6.0e-133 478.0 355 63.4
Cc04_g12210 Coffea canephora HOM05D005549 ORTHO05D006771 7.9e-133 477.6 346 65.6
Thecc.03G015300 Theobroma cacao HOM05D005549 ORTHO05D006771 1.3e-132 476.9 347 63.7
Rhsim12G0166100 Rhododendron simsii HOM05D005549 ORTHO05D006771 2.3e-132 476.1 358 62.3
Prupe.5G171000 Prunus persica HOM05D005549 ORTHO05D006771 3.9e-132 475.3 341 65.4
Potri.014G000900 Populus trichocarpa HOM05D005549 ORTHO05D006771 6.7e-132 474.6 345 62.6
MD06G1171600 Malus domestica HOM05D005549 ORTHO05D006771 1.1e-131 473.8 344 63.7
CiPaw.11G024000 Carya illinoinensis HOM05D005549 ORTHO05D006771 3.3e-131 472.2 343 64.7
Gohir.A09G171200 Gossypium hirsutum HOM05D005549 ORTHO05D006771 3.3e-131 472.2 345 64.6
FAN08G3612 Fragaria x ananassa HOM05D005549 ORTHO05D006771 4.3e-131 471.9 347 64.3
Atru.chr9.2502 Acer truncatum HOM05D005549 ORTHO05D006771 5.7e-131 471.5 346 62.4
Ciclev10020953m.g Citrus clementina HOM05D005549 ORTHO05D006771 1.3e-130 470.3 345 63.2
FvH4_5g05540 Fragaria vesca HOM05D005549 ORTHO05D006771 1.4e-129 466.8 347 64.0
FAN18G0652 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.4e-129 466.8 347 64.0
Gorai.006G188700 Gossypium raimondii HOM05D005549 ORTHO05D006771 3.1e-129 465.7 345 64.1
TAR622G1114 Trochodendron aralioides HOM05D005549 ORTHO05D006771 5.3e-129 464.9 348 60.9
COL.COLO4_30080 Corchorus olitorius HOM05D005549 ORTHO05D006771 1.2e-128 463.8 346 67.3
FAN18G1717 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.5e-128 463.4 347 63.7
Gohir.D09G166900 Gossypium hirsutum HOM05D005549 ORTHO05D006771 1.5e-128 463.4 344 64.2
RcHm_v2.0_Chr7g0193241 Rosa chinensis HOM05D005549 ORTHO05D006771 2.6e-128 462.6 346 63.3
Nn4g25809 Nelumbo nucifera HOM05D005549 ORTHO05D006771 6.5e-127 458.0 348 59.8
Hma1.2p1_0046F.1_g026660 Hydrangea macrophylla HOM05D005549 ORTHO05D006771 1.1e-126 457.2 395 55.4
CANSAT25G1426 Cannabis sativa HOM05D005549 ORTHO05D006771 1.9e-126 456.4 347 67.1
Sopen05g007130 Solanum pennellii HOM05D005549 ORTHO05D006771 2.5e-126 456.1 348 60.3
PGSC0003DMG400028373 Solanum tuberosum HOM05D005549 ORTHO05D006771 2.5e-126 456.1 348 60.9
Aqoxy3G02864 Aquilegia oxysepala HOM05D005549 ORTHO05D006771 3.2e-126 455.7 342 65.8
GSVIVG01007718001 Vitis vinifera HOM05D002875 ORTHO05D003215 2.1e-125 453.0 320 71.9
Peaxi162Scf00075g00159 Petunia axillaris HOM05D005549 ORTHO05D006771 3.6e-125 452.2 346 60.1
Sopen05g007150 Solanum pennellii HOM05D005549 ORTHO05D006771 6.1e-125 451.4 349 60.2
TWI14G0382 Tripterygium wilfordii HOM05D005549 ORTHO05D006771 6.1e-125 451.4 343 61.2
PGR031G3229 Punica granatum HOM05D005549 ORTHO05D006771 5.1e-124 448.4 348 64.4
CsaV3_1G001440 Cucumis sativus L. HOM05D005549 ORTHO05D006771 1.4e-121 440.3 346 67.1
Sc12g0005230 Simmondsia chinensis HOM05D005549 ORTHO05D006771 1.7e-119 433.3 343 61.8
Eucgr.H00383 Eucalyptus grandis HOM05D005549 ORTHO05D006771 2.9e-119 432.6 345 63.8
Nitab4.5_0002265g0110 Nicotiana tabacum HOM05D005549 ORTHO05D006771 2.9e-119 432.6 346 59.0
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 3.8e-119 432.2 336 60.7
PSO478G4565 Papaver somniferum HOM05D005549 ORTHO05D006771 6.5e-119 431.4 348 64.9
Lj3C19G0 Lonicera japonica HOM05D005549 ORTHO05D006771 8.5e-119 431.0 348 63.2
FAN13G1520 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.9e-118 429.9 343 60.3
Hund09451 Selenicereus undatus HOM05D005549 ORTHO05D006771 4.6e-117 425.2 347 58.2
MBI16_g05472_MAGBIO Magnolia biondii HOM05D005549 ORTHO05D006771 1.0e-116 424.1 344 60.2
Peaxi162Scf00141g00210 Petunia axillaris HOM05D005549 ORTHO05D006771 1.0e-116 424.1 344 57.6
MSTRG.26261 Avicennia marina HOM05D005549 ORTHO05D006771 2.3e-116 422.9 345 59.1
DCAR_016476 Daucus carota HOM05D005549 ORTHO05D006771 1.1e-115 420.6 346 62.1
Aa31LG11G650 Aethionema arabicum HOM05D005549 ORTHO05D006771 2.0e-115 419.9 346 57.8
AL8G40040 Arabidopsis lyrata HOM05D005549 ORTHO05D006771 2.6e-115 419.5 343 62.7
EL10Ac5g10725 Beta vulgaris HOM05D005549 ORTHO05D006771 1.3e-114 417.2 346 59.2
ECA232G3151 Erigeron canadensis HOM05D005549 ORTHO05D006771 3.7e-114 415.6 345 63.5
Glyma.08G230900 Glycine max HOM05D005549 ORTHO05D006771 6.3e-114 414.8 225 95.6
ClCG06G017070 Citrullus lanatus HOM05D005549 ORTHO05D006771 1.1e-113 414.1 345 63.8
AUR62008189 Chenopodium quinoa HOM05D005549 ORTHO05D006771 6.9e-113 411.4 348 57.8
MELO3C017092.2 Cucumis melo HOM05D005549 ORTHO05D006771 6.9e-113 411.4 345 63.8
Oeu024700.1 Olea europaea HOM05D005549 ORTHO05D006771 9.1e-113 411.0 351 63.0
Sp2g26140 Schrenkiella parvula HOM05D005549 ORTHO05D006771 1.2e-112 410.6 343 57.1
Carub.0008s2372 Capsella rubella HOM05D005549 ORTHO05D006771 1.5e-112 410.2 343 56.6
Thhalv10004522m.g Eutrema salsugineum HOM05D005549 ORTHO05D006771 1.5e-112 410.2 343 57.1
CARHR276820 Cardamine hirsuta HOM05D005549 ORTHO05D006771 2.0e-112 409.8 346 55.5
Migut.K00304 Erythranthe guttata HOM05D005549 ORTHO05D006771 7.7e-112 407.9 355 55.5
Sed0023293 Sechium edule HOM05D005549 ORTHO05D006771 1.3e-111 407.1 346 63.3
BraA06t25926Z Brassica rapa HOM05D005549 ORTHO05D006771 2.2e-111 406.4 341 61.9
AT5G63010 Arabidopsis thaliana HOM05D005549 ORTHO05D006771 5.0e-111 405.2 346 57.8
FAN04G2905 Fragaria x ananassa HOM05D005549 ORTHO05D006771 8.5e-111 404.4 349 57.6
Ah.02g110600 Amaranthus hybridus HOM05D005549 ORTHO05D006771 5.5e-110 401.7 347 62.8
BcaC01g02548 Brassica carinata HOM05D005549 ORTHO05D006771 1.2e-109 400.6 341 61.0
C03p63600 Brassica napus HOM05D005549 ORTHO05D006771 1.2e-109 400.6 341 61.0
BolC3t18618H Brassica oleracea HOM05D005549 ORTHO05D006771 1.2e-109 400.6 341 61.0
Zm00001eb426250 Zea mays HOM05D005549 ORTHO05D006771 1.5e-107 393.7 346 55.2
A06p29790 Brassica napus HOM05D005549 ORTHO05D006771 2.0e-107 393.3 341 61.0
BcaB02g09715 Brassica carinata HOM05D005549 ORTHO05D006771 2.2e-106 389.8 349 59.9
unitig_37.g12682 Utricularia gibba HOM05D005549 ORTHO05D006771 1.4e-105 387.1 346 54.9
Lsat_1_v5_gn_4_75780 Lactuca sativa HOM05D005549 ORTHO05D006771 2.6e-104 382.9 349 58.7
THA.LOC104818503 Tarenaya hassleriana HOM05D005549 ORTHO05D006771 5.9e-104 381.7 327 61.8
Os04g0507900 Oryza sativa ssp. japonica HOM05D005549 ORTHO05D006771 1.7e-103 380.2 348 52.9
SHI17110 Sapria himalayana HOM05D005549 ORTHO05D006771 4.7e-101 372.1 348 52.9
SGA_v2.0_scaffold293G47425 Striga asiatica HOM05D005549 ORTHO05D006771 2.8e-98 362.8 346 58.1
arahy.Tifrunner.gnm1.ann1.BVT45G Arachis hypogaea HOM05D005549 ORTHO05D006771 4.1e-97 359.0 236 80.5
Eucgr.C01244 Eucalyptus grandis HOM05D005549 ORTHO05D006771 1.8e-92 343.6 345 49.9
arahy.Tifrunner.gnm1.ann1.8228C9 Arachis hypogaea HOM05D005549 ORTHO05D006771 3.0e-92 342.8 211 84.8
arahy.Tifrunner.gnm1.ann1.DCL1V8 Arachis hypogaea HOM05D005549 ORTHO05D006771 3.0e-92 342.8 211 84.8
HPP92_021890 Vanilla planifolia HOM05D005549 ORTHO05D006771 1.2e-91 340.9 349 53.9
HanXRQChr09g0272091 Helianthus annuus HOM05D005549 ORTHO05D006771 6.1e-85 318.5 275 62.2
Cpa.g.c31519.1 Carica papaya HOM05D005549 ORTHO05D006771 1.8e-84 317.0 239 60.3
CDE02G3271 Ceratophyllum demersum HOM05D005549 ORTHO05D006771 7.8e-80 301.6 340 47.6
Solyc05g012300.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 8.6e-79 298.1 224 60.3
Solyc05g012320.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 3.3e-78 296.2 225 60.0
Pp3c9_15370 Physcomitrium patens HOM05D005549 ORTHO05D006771 1.7e-74 283.9 345 42.0
Potri.012G087300 Populus trichocarpa HOM05D005549 ORTHO05D006771 2.9e-74 283.1 218 59.6
Atru.chr9.2510 Acer truncatum HOM05D005549 ORTHO05D006771 1.1e-73 281.2 209 62.2
SMO367G1205 Selaginella moellendorffii HOM05D005549 ORTHO05D006771 1.7e-71 273.9 344 42.2
CSS0043757 Camellia sinensis var. sinensis HOM05D005549 ORTHO05D006771 6.6e-71 271.9 223 59.2
Mapoly0027s0008 Marchantia polymorpha HOM05D005549 ORTHO05D006771 8.6e-71 271.6 383 37.1
ECA232G2898 Erigeron canadensis HOM05D005549 ORTHO05D006771 9.5e-70 268.1 222 64.9
AUR62030941 Chenopodium quinoa HOM05D005549 ORTHO05D006771 1.5e-67 260.8 224 55.4
ATR0807G008 Amborella trichopoda HOM05D005549 ORTHO05D006771 3.7e-66 256.1 221 51.6
Peaxi162Scf00141g10027 Petunia axillaris HOM05D005549 ORTHO05D006771 6.0e-64 248.8 185 59.5
AagrBONN_evm.TU.Sc2ySwM_228.3282 Anthoceros agrestis HOM05D005549 ORTHO05D006771 8.6e-63 245.0 375 37.1
Gorai.001G151900 Gossypium raimondii HOM05D005549 ORTHO05D006771 1.2e-56 224.6 186 60.2
MD14G1177100 Malus domestica HOM05D005549 ORTHO05D006771 3.0e-55 219.9 221 52.0
Gohir.D07G139801 Gossypium hirsutum HOM05D005549 ORTHO05D006771 5.1e-55 219.2 186 59.1
HanXRQChr16g0506951 Helianthus annuus HOM05D005549 ORTHO05D006771 1.9e-54 217.2 195 53.8
HanXRQChr04g0107691 Helianthus annuus HOM05D005549 ORTHO05D006771 7.6e-51 205.3 182 65.4
MD06G1171300 Malus domestica HOM05D005549 ORTHO05D006771 4.1e-49 199.5 315 36.8
CBR_g24288 Chara braunii HOM05D005549 ORTHO05D006771 9.2e-49 198.4 510 28.0
Eucgr.H00387 Eucalyptus grandis HOM05D005549 ORTHO05D006771 1.6e-48 197.6 201 49.8
TPR.G8752 Trifolium pratense HOM05D005549 ORTHO05D006771 4.3e-38 162.9 87 85.1
Atru.chr9.2511 Acer truncatum HOM05D005549 ORTHO05D006771 9.0e-36 155.2 125 57.6
Cre10.g434300 Chlamydomonas reinhardtii HOM05D005549 ORTHO05D006771 3.9e-31 139.8 254 40.2
Sabra12G0062500 Salix brachista HOM05D005549 ORTHO05D006771 5.1e-31 139.4 147 52.4
Gohir.D12G085501 Gossypium hirsutum HOM05D005549 ORTHO05D006771 3.7e-29 133.3 140 50.7
ATR0807G036 Amborella trichopoda HOM05D005549 ORTHO05D006771 6.9e-28 129.0 100 59.0
Cpa.g.c31519.2 Carica papaya HOM05D005549 ORTHO05D006771 1.1e-25 121.7 85 65.9
MCO16G545 Micromonas commoda HOM05D005549 ORTHO05D006771 2.1e-21 107.5 273 30.4
Lj5C126T17 Lonicera japonica HOM05D005549 ORTHO05D006771 2.7e-16 90.5 96 49.0
MD14G1177000 Malus domestica HOM05D005549 ORTHO05D006771 1.1e-14 85.1 64 56.2
Nitab4.5_0003499g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 6.3e-13 79.3 99 44.4


User provided reference genes

Program Settings