Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 2.3e-37 158.3 75 100.0
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 1.3e-35 152.5 76 97.4
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 2.6e-33 144.8 75 94.7
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 2.9e-32 141.4 75 89.3
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 2.5e-31 138.3 75 86.7
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 9.4e-31 136.3 76 90.8
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 4.7e-30 134.0 75 88.0
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 1.0e-29 132.9 74 86.5
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 5.1e-29 130.6 76 85.5
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 3.3e-28 127.9 76 82.9
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 4.4e-28 127.5 75 77.3
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 5.7e-28 127.1 74 82.4
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 1.3e-27 125.9 75 84.0
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 1.3e-27 125.9 73 83.6
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 1.7e-27 125.6 74 81.1
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 2.2e-27 125.2 76 78.9
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.4e-26 122.5 71 84.5
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 1.4e-26 122.5 71 84.5
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 1.4e-26 122.5 75 81.3
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 1.4e-26 122.5 76 78.9
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 1.8e-26 122.1 78 83.3
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 2.4e-26 121.7 73 83.6
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 4.1e-26 120.9 73 80.8
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 7.0e-26 120.2 78 80.8
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 7.0e-26 120.2 71 83.1
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 9.1e-26 119.8 81 74.1
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 1.5e-25 119.0 73 76.7
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 2.0e-25 118.6 73 76.7
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 4.5e-25 117.5 72 77.8
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 7.7e-25 116.7 80 70.0
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 1.0e-24 116.3 75 76.0
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 1.3e-24 115.9 75 70.7
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 1.7e-24 115.5 78 78.2
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 1.7e-24 115.5 68 79.4
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 3.8e-24 114.4 75 70.7
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 8.5e-24 113.2 73 74.0
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 1.1e-23 112.8 71 77.5
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.1e-23 112.8 73 74.0
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 1.1e-23 112.8 76 72.4
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 1.4e-23 112.5 75 74.7
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 3.2e-23 111.3 69 76.8
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 7.2e-23 110.2 74 71.6
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 1.2e-22 109.4 74 71.6
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 2.1e-22 108.6 74 68.9
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 2.7e-22 108.2 78 70.5
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 3.6e-22 107.8 83 66.3
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 4.7e-22 107.5 76 71.1
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 2.3e-21 105.1 70 67.1
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 2.3e-21 105.1 73 74.0
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 3.9e-21 104.4 85 65.9
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 6.7e-21 103.6 73 67.1
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 1.5e-20 102.4 81 63.0
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 2.6e-20 101.7 72 70.8
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 4.4e-20 100.9 70 65.7
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 4.4e-20 100.9 87 63.2
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 7.4e-20 100.1 74 67.6
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 7.4e-20 100.1 74 67.6
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 7.4e-20 100.1 73 69.9
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 9.7e-20 99.8 74 67.6
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 1.3e-19 99.4 72 62.5
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 1.7e-19 99.0 84 60.7
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 2.2e-19 98.6 74 66.2
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 3.7e-19 97.8 81 60.5
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 6.3e-19 97.1 73 63.0
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 8.2e-19 96.7 66 68.2
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 8.2e-19 96.7 71 66.2
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.1e-18 96.3 74 62.2
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 1.8e-18 95.5 70 65.7
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.2e-17 92.8 68 67.6
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 2.6e-17 91.7 84 58.3
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 2.6e-17 91.7 73 61.6
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 2.6e-17 91.7 71 67.6
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 2.6e-17 91.7 71 67.6
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 4.5e-17 90.9 71 67.6
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 4.5e-17 90.9 71 67.6
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 5.9e-17 90.5 67 68.7
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 7.7e-17 90.1 57 77.2
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 7.7e-17 90.1 70 64.3
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 7.7e-17 90.1 66 65.2
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 7.7e-17 90.1 69 62.3
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 1.3e-16 89.4 72 63.9
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 1.3e-16 89.4 82 63.4
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.7e-16 89.0 78 61.5
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 1.7e-16 89.0 76 59.2
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 2.2e-16 88.6 70 67.1
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 2.2e-16 88.6 81 60.5
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 2.2e-16 88.6 72 63.9
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 2.9e-16 88.2 84 59.5
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 2.9e-16 88.2 84 59.5
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 6.5e-16 87.0 72 62.5
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 6.5e-16 87.0 72 62.5
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 6.5e-16 87.0 72 62.5
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 6.5e-16 87.0 72 62.5
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 6.5e-16 87.0 72 62.5
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 6.5e-16 87.0 72 62.5
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 6.5e-16 87.0 72 62.5
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 6.5e-16 87.0 72 63.9
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 6.5e-16 87.0 76 57.9
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 6.5e-16 87.0 72 62.5
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 8.5e-16 86.7 84 58.3
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 8.5e-16 86.7 84 58.3
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 1.1e-15 86.3 84 58.3
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 1.1e-15 86.3 72 61.1
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 1.1e-15 86.3 72 61.1
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 1.1e-15 86.3 72 61.1
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 1.1e-15 86.3 72 61.1
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 1.1e-15 86.3 72 61.1
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 1.1e-15 86.3 72 61.1
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 1.1e-15 86.3 72 61.1
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 1.5e-15 85.9 82 58.5
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 1.5e-15 85.9 72 61.1
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 1.9e-15 85.5 73 61.6
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 1.9e-15 85.5 82 58.5
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 2.5e-15 85.1 75 60.0
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 3.2e-15 84.7 72 61.1
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 5.5e-15 84.0 83 59.0
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 5.5e-15 84.0 83 59.0
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 5.5e-15 84.0 82 57.3
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 5.5e-15 84.0 83 59.0
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 5.5e-15 84.0 83 59.0
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 5.5e-15 84.0 83 59.0
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 7.2e-15 83.6 75 57.3
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 7.2e-15 83.6 75 58.7
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 7.2e-15 83.6 83 57.8
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 7.2e-15 83.6 83 57.8
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 7.2e-15 83.6 63 63.5
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 9.4e-15 83.2 80 57.5
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 1.2e-14 82.8 77 59.7
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 1.6e-14 82.4 83 56.6
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 4.7e-14 80.9 66 60.6
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 1.4e-13 79.3 71 54.9
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 4.0e-13 77.8 82 54.9
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 6.8e-13 77.0 72 50.0
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 8.8e-13 76.6 78 55.1
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 1.5e-12 75.9 65 56.9
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 2.0e-12 75.5 62 61.3
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 3.4e-12 74.7 61 62.3
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 3.4e-12 74.7 78 51.3
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 3.4e-12 74.7 64 56.2
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 4.4e-12 74.3 80 48.8
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 7.5e-12 73.6 66 60.6
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 9.7e-12 73.2 65 55.4
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 1.3e-11 72.8 76 48.7
TAR365G0774 Trochodendron aralioides HOM05D004817 ORTHO05D005790 6.3e-11 70.5 86 50.0
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 8.3e-11 70.1 65 58.5
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 7.0e-10 67.0 93 43.0
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 7.0e-10 67.0 75 46.7
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 9.1e-10 66.6 88 48.9
HPP92_010590 Vanilla planifolia HOM05D004817 ORTHO05D005790 1.0e-08 63.2 54 63.0
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 8.5e-08 60.1 73 45.2


User provided reference genes

Program Settings